Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000979

Physical Location & Seq

Genomic Coordinates Reverse (-)

49448097 .. 49466337

Gene Structure 18241 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00320660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGAAAGTCAACGGCCATTTAACTCTAATTGAAACACACAGAACCATCGTGTTGTACTCATACCTCTCTGTGTTTAAGGAGGAAGGTTTCTGCAAGGTGAGTTCCCGGCCACGTCTTGCGGTTAGGTACGGTGTGAAAGTGACGCACCGTAGCCCGGTCACGGTAAAGACTATTTTGCCCCTCATGTCTTCTTTTTCTTACGTCGTTGCCATTCACCCTAGCAATGAAAGGCTGTACCTACAGCCCGTACGTCGGCTTCGGGACATCATAGAATCAGCTGACGAGTACTTATCCAAGGATCTGATATGCACTCGGAATGAAGTTCGAATCACTTTCATGAAGAAATCGAAGCGAGTTGTGGACGTTTTCACGTTGAACGGAGCTGCTGCCGTTTTCCGGAAATTTTCCGCGAACCCGTGGCTTCAAGATATATTCAAGAAGTTCAAAGATTCAAATGGTAGCTTCAAAGAATGCTTAATTTCTGATGCCTCCGGTATGCTAAGCCTCTATGAAGCAACACATCTTAGGGTTAATGGAGAAGATATACTTGAAGAGGCTCTTTTGTTCACCACCACTCAACTCAACTACGTGCTCAAAAGCAACATGAAAAATCAAGCCCAATCGTATTTCAACGAGGCCCAATGGTTGCACGAAGGACGCATTCCGAGCATGGAAGAGTATATGCACGTTGCAACAGTTTCTATTACTTACACATGTTCATCGACCATTTCGATACTTGGCATGGGAGATATTGTAACAAAGGATGCATTTGAGTGGTTGTTGAATGACCCGAAAATTGTTAGAGCTTCCAATATCATTTTTAGGCTCATGAATGACATTGTTTCCACCAAGTTTGAGAAAGAGAGAGGGCATGCACCTTCTAGCATTGATTGCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00909 map00909

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

299

Amino Acids

34.19

Weight (kDa)

8.96

Isoelectric Point (pI)

41.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Terpene_synth	PF01397	142 - 205	6.8e-21	Terpene synthase, N-terminal domain
Terpene_syn_C_2	PF19086	180 - 299	4.4e-29	Terpene synthase family 2, C-terminal metal binding
Terpene_synth_C	PF03936	193 - 298	4e-35	Terpene synthase family, metal binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000979)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22161 FvH4_3g32081 FvH4_3g32180 FvH4_5g06450 FvH4_6g19300
malus_domestica	MD12G1162800.v1.1 MD12G1163200.v1.1 MD12G1163600.v1.1
prunus_persica	Prupe.4G194000_v2.0.a1 Prupe.4G194700_v2.0.a1 Prupe.4G198800_v2.0.a1
pyrus_communis	pycom07g03220
rosa_chinensis	RchiOBHm_Chr0c17g0499941 RchiOBHm_Chr1g0326031 RchiOBHm_Chr1g0326301 RchiOBHm_Chr4g0406361 RchiOBHm_Chr6g0274881
rosa_laevigata	RLG00000008723 RLG00000014166 RLG00000033702
rosa_multiflora	Rmu_sc0000149.1_g000030 Rmu_sc0001353.1_g000008 Rmu_sc0006272.1_g000013 Rmu_sc0008056.1_g000001 Rmu_sc0011910.1_g000003 Rmu_sc0019563.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044360 Rroxscaffold_2G00123050 Rroxscaffold_2G00127900 Rroxscaffold_2G00128770 Rroxscaffold_3G00225480 Rroxscaffold_3G00235290 Rroxscaffold_4G00317180 Rroxscaffold_4G00320650 Rroxscaffold_4G00320660 Rroxscaffold_6G00393300
rosa_samantha	Rh1BG062100 Rh1CG074300 Rh1DG080600 Rh1DG081600 Rh3BG331000 Rh3CG216000 Rh3CG216300 Rh3CG216700 Rh3DG216700 Rh3DG328000 Rh3DG328300 Rh4CG145600 Rh5CG282500 Rh5DG271000 Rh5DG275500 Rh5DG312500 Rh5DG416000 Rh5DG454000 Rh6BG141200 Rh6BG178000 Rh6BG178100 Rh6BG178200 Rh6CG137600 Rh6CG174100 Rh6CG205100 Rh6CG272400 Rh6DG195900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	410
AccIII	TCCGGA	1 cut(s)	396
AciI	CCGC	2 cut(s)	119, 408
AclWI	GGATC	1 cut(s)	306
AcoI	YGGCCR	2 cut(s)	13, 107
AcsI	RAATTY	1 cut(s)	401
AfaI	GTAC	5 cut(s)	56, 128, 236, 249, 287
AfiI	CCNNNNNNNGG	4 cut(s)	154, 160, 252, 396
AflIII	ACRYGT	1 cut(s)	713
AjiI	CACGTC	1 cut(s)	113
AluBI	AGCT	4 cut(s)	278, 383, 462, 806
AluI	AGCT	4 cut(s)	278, 383, 462, 806
Alw21I	GWGCWC	1 cut(s)	594
AlwI	GGATC	1 cut(s)	306
Aor13HI	TCCGGA	1 cut(s)	396
AoxI	GGCC	3 cut(s)	13, 107, 636
ApeKI	GCWGC	2 cut(s)	383, 386
ApoI	RAATTY	1 cut(s)	401
AspS9I	GGNCC	1 cut(s)	637
AsuC2I	CCSGG	2 cut(s)	106, 155
AsuHPI	GGTGA	3 cut(s)	109, 206, 559
AsuII	TTCGAA	1 cut(s)	325
BarI	GAAGNNNNNNTAC	2 cut(s)	240, 272
BbsI	GAAGAC	1 cut(s)	180
Bbv12I	GWGCWC	1 cut(s)	594
BbvI	GCAGC	2 cut(s)	370, 373
BccI	CCATC	1 cut(s)	53
BceAI	ACGGC	2 cut(s)	28, 374
BcnI	CCSGG	2 cut(s)	106, 155
BfaI	CTAG	2 cut(s)	219, 882
BfmI	CTRYAG	1 cut(s)	239
BisI	GCNGC	2 cut(s)	384, 387
BlpI	GCTNAGC	1 cut(s)	500
BlsI	GCNGC	2 cut(s)	385, 388
BmcAI	AGTACT	1 cut(s)	287
Bme1390I	CCNGG	2 cut(s)	106, 155
BmgBI	CACGTC	1 cut(s)	113
BmgT120I	GGNCC	1 cut(s)	637
BmrFI	CCNGG	2 cut(s)	106, 155
BmsI	GCATC	2 cut(s)	475, 754
BpiI	GAAGAC	1 cut(s)	180
Bpu1102I	GCTNAGC	1 cut(s)	500
Bpu14I	TTCGAA	1 cut(s)	325
BpuMI	CCSGG	2 cut(s)	106, 155
BsaAI	YACGTR	1 cut(s)	589
BsaJI	CCNNGG	2 cut(s)	294, 416
BsaWI	WCCGGW	2 cut(s)	396, 491
BsaXI	ACNNNNNCTCC	2 cut(s)	738, 768
Bsc4I	CCNNNNNNNGG	4 cut(s)	154, 160, 252, 396
Bse3DI	GCAATG	1 cut(s)	229
BseAI	TCCGGA	1 cut(s)	396
BseDI	CCNNGG	2 cut(s)	294, 416
BseGI	GGATG	1 cut(s)	769
BseLI	CCNNNNNNNGG	4 cut(s)	154, 160, 252, 396
BseMI	GCAATG	1 cut(s)	229
BseXI	GCAGC	2 cut(s)	370, 373
Bsh1236I	CGCG	1 cut(s)	410
BshFI	GGCC	3 cut(s)	15, 109, 638
BsiHKAI	GWGCWC	1 cut(s)	594
BsiSI	CCGG	4 cut(s)	106, 155, 397, 492
BsiWI	CGTACG	1 cut(s)	247
BslFI	GGGAC	1 cut(s)	275
BslI	CCNNNNNNNGG	4 cut(s)	154, 160, 252, 396
BsmFI	GGGAC	1 cut(s)	275
BsmI	GAATGC	2 cut(s)	476, 660
BsnI	GGCC	3 cut(s)	15, 109, 638
Bsp119I	TTCGAA	1 cut(s)	325
Bsp1286I	GDGCHC	1 cut(s)	594
Bsp13I	TCCGGA	1 cut(s)	396
Bsp143I	GATC	1 cut(s)	298
Bsp1720I	GCTNAGC	1 cut(s)	500
BspACI	CCGC	2 cut(s)	119, 408
BspANI	GGCC	3 cut(s)	15, 109, 638
BspEI	TCCGGA	1 cut(s)	396
BspFNI	CGCG	1 cut(s)	410
BspHI	TCATGA	2 cut(s)	336, 828
BspPI	GGATC	1 cut(s)	306
BspT104I	TTCGAA	1 cut(s)	325
BsrDI	GCAATG	1 cut(s)	229
BssECI	CCNNGG	2 cut(s)	294, 416
BssMI	GATC	1 cut(s)	298
BssT1I	CCWWGG	1 cut(s)	294
Bst4CI	ACNGT	4 cut(s)	131, 149, 163, 697
Bst6I	CTCTTC	2 cut(s)	546, 669
BstAPI	GCANNNNNTGC	1 cut(s)	891
BstBAI	YACGTR	1 cut(s)	589
BstBI	TTCGAA	1 cut(s)	325
BstC8I	GCNNGC	1 cut(s)	873
BstDEI	CTNAG	2 cut(s)	500, 524
BstDSI	CCRYGG	1 cut(s)	416
BstF5I	GGATG	1 cut(s)	769
BstFNI	CGCG	1 cut(s)	410
BstKTI	GATC	1 cut(s)	301
BstMBI	GATC	1 cut(s)	298
BstMWI	GCNNNNNNNGC	2 cut(s)	666, 891
BstNSI	RCATGY	2 cut(s)	717, 875
BstSCI	CCNGG	2 cut(s)	104, 153
BstSFI	CTRYAG	1 cut(s)	239
BstUI	CGCG	1 cut(s)	410
BstV1I	GCAGC	2 cut(s)	370, 373
BstV2I	GAAGAC	1 cut(s)	180
BstX2I	RGATCY	1 cut(s)	298
BstYI	RGATCY	1 cut(s)	298
BsuRI	GGCC	3 cut(s)	15, 109, 638
BtgI	CCRYGG	1 cut(s)	416
BtrI	CACGTC	1 cut(s)	113
BtsCI	GGATG	1 cut(s)	769
Cac8I	GCNNGC	1 cut(s)	873
CciI	TCATGA	2 cut(s)	336, 828
Cfr13I	GGNCC	1 cut(s)	637
CseI	GACGC	2 cut(s)	151, 666
Csp6I	GTAC	5 cut(s)	55, 127, 235, 248, 286
CspCI	CAANNNNNGTGG	2 cut(s)	835, 870
CviAII	CATG	8 cut(s)	184, 337, 604, 670, 714, 742, 829, 872
CviQI	GTAC	5 cut(s)	55, 127, 235, 248, 286
DdeI	CTNAG	2 cut(s)	500, 524
DpnI	GATC	1 cut(s)	300
DpnII	GATC	1 cut(s)	298
EaeI	YGGCCR	2 cut(s)	13, 107
Eam1104I	CTCTTC	2 cut(s)	546, 669
EarI	CTCTTC	2 cut(s)	546, 669
Eco130I	CCWWGG	1 cut(s)	294
EcoT14I	CCWWGG	1 cut(s)	294
EcoT22I	ATGCAT	1 cut(s)	769
ErhI	CCWWGG	1 cut(s)	294
FaeI	CATG	8 cut(s)	187, 340, 607, 673, 717, 745, 832, 875
FalI	AAGNNNNNCTT	4 cut(s)	531, 563, 543, 575
FaqI	GGGAC	1 cut(s)	275
FatI	CATG	8 cut(s)	183, 336, 603, 669, 713, 741, 828, 871
Fnu4HI	GCNGC	2 cut(s)	384, 387
FokI	GGATG	1 cut(s)	776
Fsp4HI	GCNGC	2 cut(s)	384, 387
FspBI	CTAG	2 cut(s)	219, 882
GluI	GCNGC	2 cut(s)	384, 387
HaeIII	GGCC	3 cut(s)	15, 109, 638
HapII	CCGG	4 cut(s)	106, 155, 397, 492
HgaI	GACGC	2 cut(s)	151, 666
Hin1II	CATG	8 cut(s)	187, 340, 607, 673, 717, 745, 832, 875
HincII	GTYRAC	1 cut(s)	10
HindII	GTYRAC	1 cut(s)	10
HinfI	GANTC	3 cut(s)	272, 327, 449
HpaII	CCGG	4 cut(s)	106, 155, 397, 492
HphI	GGTGA	3 cut(s)	109, 206, 559
Hpy166II	GTNNAC	3 cut(s)	10, 361, 567
Hpy188I	TCNGA	4 cut(s)	303, 315, 484, 666
Hpy188III	TCNNGA	6 cut(s)	260, 337, 397, 425, 436, 829
Hpy8I	GTNNAC	3 cut(s)	10, 361, 567
Hpy99I	CGWCG	2 cut(s)	206, 255
HpyAV	CCTTC	3 cut(s)	77, 647, 888
HpyCH4III	ACNGT	4 cut(s)	131, 149, 163, 697
HpyCH4IV	ACGT	7 cut(s)	112, 201, 250, 363, 371, 588, 687
HpyCH4V	TGCA	7 cut(s)	93, 309, 649, 685, 692, 767, 875
HpyF10VI	GCNNNNNNNGC	2 cut(s)	666, 891
HpyF3I	CTNAG	2 cut(s)	500, 524
HpySE526I	ACGT	7 cut(s)	112, 201, 250, 363, 371, 588, 687
Hsp92II	CATG	8 cut(s)	187, 340, 607, 673, 717, 745, 832, 875
Kpn2I	TCCGGA	1 cut(s)	396
Kzo9I	GATC	1 cut(s)	298
LmnI	GCTCC	1 cut(s)	380
LpnPI	CCDG	4 cut(s)	119, 168, 410, 505
Lsp1109I	GCAGC	2 cut(s)	370, 373
LweI	GCATC	2 cut(s)	475, 754
MaeI	CTAG	2 cut(s)	219, 882
MaeII	ACGT	7 cut(s)	112, 201, 250, 363, 371, 588, 687
MaeIII	GTNAC	3 cut(s)	139, 157, 754
MalI	GATC	1 cut(s)	300
MboI	GATC	1 cut(s)	298
MboII	GAAGA	5 cut(s)	180, 352, 551, 563, 686
MflI	RGATCY	1 cut(s)	298
MhlI	GDGCHC	1 cut(s)	594
MluCI	AATT	4 cut(s)	27, 401, 477, 795
MnlI	CCTC	8 cut(s)	73, 74, 191, 499, 515, 547, 628, 860
Mph1103I	ATGCAT	1 cut(s)	769
MroI	TCCGGA	1 cut(s)	396
MseI	TTAA	4 cut(s)	20, 75, 476, 531
MslI	CAYNNNNRTG	2 cut(s)	335, 772
MspA1I	CMGCKG	1 cut(s)	278
MspI	CCGG	4 cut(s)	106, 155, 397, 492
MspR9I	CCNGG	2 cut(s)	106, 155
Mva1269I	GAATGC	2 cut(s)	476, 660
MvnI	CGCG	1 cut(s)	410
MwoI	GCNNNNNNNGC	2 cut(s)	666, 891
NciI	CCSGG	2 cut(s)	106, 155
NdeII	GATC	1 cut(s)	298
NlaIII	CATG	8 cut(s)	187, 340, 607, 673, 717, 745, 832, 875
NmuCI	GTSAC	2 cut(s)	139, 157
NsiI	ATGCAT	1 cut(s)	769
NspI	RCATGY	2 cut(s)	717, 875
NspV	TTCGAA	1 cut(s)	325
PaeI	GCATGC	1 cut(s)	875
PagI	TCATGA	2 cut(s)	336, 828
PciI	ACATGT	1 cut(s)	713
PcsI	WCGNNNNNNNCGW	1 cut(s)	728
PctI	GAATGC	2 cut(s)	476, 660
PfeI	GAWTC	3 cut(s)	272, 327, 449
Pfl23II	CGTACG	1 cut(s)	247
PkrI	GCNGC	2 cut(s)	385, 388
Ppu21I	YACGTR	1 cut(s)	589
PscI	ACATGT	1 cut(s)	713
PspLI	CGTACG	1 cut(s)	247
PspPI	GGNCC	1 cut(s)	637
PsuI	RGATCY	1 cut(s)	298
PvuII	CAGCTG	1 cut(s)	278
RsaI	GTAC	5 cut(s)	56, 128, 236, 249, 287
RsaNI	GTAC	5 cut(s)	55, 127, 235, 248, 286
RseI	CAYNNNNRTG	2 cut(s)	335, 772
SaqAI	TTAA	4 cut(s)	20, 75, 476, 531
SatI	GCNGC	2 cut(s)	384, 387
Sau3AI	GATC	1 cut(s)	298
Sau96I	GGNCC	1 cut(s)	637
ScaI	AGTACT	1 cut(s)	287
ScrFI	CCNGG	2 cut(s)	106, 155
SduI	GDGCHC	1 cut(s)	594
SfaNI	GCATC	2 cut(s)	475, 754
SfcI	CTRYAG	1 cut(s)	239
SfuI	TTCGAA	1 cut(s)	325
SmiMI	CAYNNNNRTG	2 cut(s)	335, 772
SphI	GCATGC	1 cut(s)	875
Sse9I	AATT	4 cut(s)	27, 401, 477, 795
SsiI	CCGC	2 cut(s)	119, 408
SspMI	CTAG	2 cut(s)	219, 882
StyD4I	CCNGG	2 cut(s)	104, 153
StyI	CCWWGG	1 cut(s)	294
TaaI	ACNGT	4 cut(s)	131, 149, 163, 697
TaiI	ACGT	7 cut(s)	115, 204, 253, 366, 374, 591, 690
TaqI	TCGA	4 cut(s)	325, 347, 722, 731
TasI	AATT	4 cut(s)	27, 401, 477, 795
TatI	WGTACW	2 cut(s)	54, 285
TfiI	GAWTC	3 cut(s)	272, 327, 449
Tru1I	TTAA	4 cut(s)	20, 75, 476, 531
Tru9I	TTAA	4 cut(s)	20, 75, 476, 531
TseFI	GTSAC	2 cut(s)	139, 157
TseI	GCWGC	2 cut(s)	383, 386
Tsp45I	GTSAC	2 cut(s)	139, 157
TspDTI	ATGAA	9 cut(s)	17, 240, 325, 333, 353, 525, 620, 708, 845
TspGWI	ACGGA	1 cut(s)	393
XapI	RAATTY	1 cut(s)	401
XceI	RCATGY	2 cut(s)	717, 875
XspI	CTAG	2 cut(s)	219, 882
ZrmI	AGTACT	1 cut(s)	287
Zsp2I	ATGCAT	1 cut(s)	769

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.