Rh1DG080600

synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000979
Physical Location & Seq
Reverse (-)
14722337 .. 14726727
4391 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG080600.1

Sequence Viewer

Length: 567 bp
ATGGCCGCAGCCTCAGCAAATCCTCCACATTTTATTCACCTAACCTACAAACCCCCTGGTGAACCTGCTAAGCTTAAATTAGCATGGGTGGGTAAAGGTGGCCATGGAGGTGATGTGGTGATATATGCTGATGAGGAGGAAGATACATTGCTGGAGTTTCACAAGAAAGGGAGGTACAATGCGAAGCGCGGCGGAAATGTGGCTGCTATGGGGGTTTTGACCTCCCAATTGAGAGATGGAGTTGCTGCCCCAACTCTGCACATTCCTGTGCCTTTTGAGCAAAAGAGAGAACACATTGCATCAGCAGTGGAATGCTACATGAAGCAATACGGTGTCACAGAAGAAGAAGCAGAAGTCGAGCTAACTAAACAAGTGAATGACGCATGGCAAGACATAAACGAAGAGTGGCTGGATGCCATCTCTATCCCTAGGCCCCTACTCTTGCTGATTTTGAACCTTGCACGTTCTAGTGAAGTTCTATACAAGGATGAAGATGTGTTTACTCATTCTGAAAATGTGCTCAAGGGTCATGTAGTTTCTCTCTTTATCGAACCCGTGCCCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 map00909
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

188

Amino Acids

20.85

Weight (kDa)

5.24

Isoelectric Point (pI)

55.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GTP1_OBG PF01018 31 - 91 5.3e-07 GTP1/OBG
Terpene_syn_C_2 PF19086 91 - 131 8.8e-09 Terpene synthase family 2, C-terminal metal binding
Terpene_synth_C PF03936 92 - 131 1.3e-10 Terpene synthase family, metal binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 73
AccII CGCG 1 cut(s) 189
AciI CCGC 3 cut(s) 6, 189, 192
AcoI YGGCCR 2 cut(s) 3, 100
AfaI GTAC 1 cut(s) 176
AgsI TTSAA 1 cut(s) 454
AjnI CCWGG 1 cut(s) 55
AluBI AGCT 2 cut(s) 73, 361
AluI AGCT 2 cut(s) 73, 361
Alw21I GWGCWC 1 cut(s) 522
AoxI GGCC 3 cut(s) 3, 100, 431
ApeKI GCWGC 3 cut(s) 8, 203, 245
AspA2I CCTAGG 1 cut(s) 428
AspLEI GCGC 1 cut(s) 189
AspS9I GGNCC 1 cut(s) 432
AsuHPI GGTGA 4 cut(s) 29, 71, 122, 130
AvrII CCTAGG 1 cut(s) 428
BaeGI GKGCMC 1 cut(s) 561
BalI TGGCCA 1 cut(s) 102
Bbv12I GWGCWC 1 cut(s) 522
BbvCI CCTCAGC 1 cut(s) 13
BbvI GCAGC 3 cut(s) 20, 190, 232
BccI CCATC 2 cut(s) 230, 425
BciT130I CCWGG 1 cut(s) 57
BfaI CTAG 2 cut(s) 429, 468
BfuAI ACCTGC 1 cut(s) 73
BisI GCNGC 5 cut(s) 6, 9, 190, 204, 246
BlnI CCTAGG 1 cut(s) 428
BlpI GCTNAGC 1 cut(s) 69
BlsI GCNGC 5 cut(s) 7, 10, 191, 205, 247
Bme1390I CCNGG 1 cut(s) 57
BmgT120I GGNCC 1 cut(s) 432
BmiI GGNNCC 1 cut(s) 434
BmrFI CCNGG 1 cut(s) 57
BmsI GCATC 2 cut(s) 308, 403
BpmI CTGGAG 1 cut(s) 173
Bpu10I CCTNAGC 1 cut(s) 13
Bpu1102I GCTNAGC 1 cut(s) 69
BpuEI CTTGAG 1 cut(s) 506
BsaJI CCNNGG 3 cut(s) 55, 103, 428
BsaXI ACNNNNNCTCC 2 cut(s) 99, 129
Bse3DI GCAATG 2 cut(s) 146, 294
BseBI CCWGG 1 cut(s) 57
BseDI CCNNGG 3 cut(s) 55, 103, 428
BseGI GGATG 2 cut(s) 418, 493
BseMI GCAATG 2 cut(s) 146, 294
BseMII CTCAG 1 cut(s) 27
BseRI GAGGAG 1 cut(s) 149
BseSI GKGCMC 1 cut(s) 561
BseXI GCAGC 3 cut(s) 20, 190, 232
BsgI GTGCAG 1 cut(s) 242
Bsh1236I CGCG 1 cut(s) 189
BshFI GGCC 3 cut(s) 5, 102, 433
BsiHKAI GWGCWC 1 cut(s) 522
BsmI GAATGC 1 cut(s) 317
BsnI GGCC 3 cut(s) 5, 102, 433
Bsp1286I GDGCHC 2 cut(s) 522, 561
Bsp1720I GCTNAGC 1 cut(s) 69
Bsp19I CCATGG 1 cut(s) 103
BspACI CCGC 3 cut(s) 6, 189, 192
BspANI GGCC 3 cut(s) 5, 102, 433
BspCNI CTCAG 1 cut(s) 26
BspFNI CGCG 1 cut(s) 189
BspLI GGNNCC 1 cut(s) 434
BspMI ACCTGC 1 cut(s) 73
BsrDI GCAATG 2 cut(s) 146, 294
BssECI CCNNGG 3 cut(s) 55, 103, 428
BssT1I CCWWGG 2 cut(s) 103, 428
Bst2UI CCWGG 1 cut(s) 57
Bst4CI ACNGT 1 cut(s) 332
Bst6I CTCTTC 1 cut(s) 396
BstDEI CTNAG 2 cut(s) 13, 69
BstDSI CCRYGG 1 cut(s) 103
BstF5I GGATG 2 cut(s) 418, 493
BstFNI CGCG 1 cut(s) 189
BstHHI GCGC 1 cut(s) 189
BstMWI GCNNNNNNNGC 2 cut(s) 14, 277
BstNI CCWGG 1 cut(s) 57
BstSCI CCNGG 1 cut(s) 55
BstSLI GKGCMC 1 cut(s) 561
BstUI CGCG 1 cut(s) 189
BstV1I GCAGC 3 cut(s) 20, 190, 232
BsuRI GGCC 3 cut(s) 5, 102, 433
BtgI CCRYGG 1 cut(s) 103
BtsCI GGATG 2 cut(s) 418, 493
BtsI GCAGTG 1 cut(s) 312
BtsIMutI CAGTG 1 cut(s) 312
BveI ACCTGC 1 cut(s) 73
CfoI GCGC 1 cut(s) 189
Cfr13I GGNCC 1 cut(s) 432
CseI GACGC 1 cut(s) 389
Csp6I GTAC 1 cut(s) 175
CviAII CATG 5 cut(s) 84, 104, 319, 384, 530
CviJI RGCY 8 cut(s) 5, 11, 73, 102, 203, 361, 409, 433
CviKI_1 RGCY 8 cut(s) 5, 11, 73, 102, 203, 361, 409, 433
CviQI GTAC 1 cut(s) 175
DdeI CTNAG 2 cut(s) 13, 69
EaeI YGGCCR 2 cut(s) 3, 100
Eam1104I CTCTTC 1 cut(s) 396
EarI CTCTTC 1 cut(s) 396
EciI GGCGGA 1 cut(s) 207
Eco130I CCWWGG 2 cut(s) 103, 428
EcoO109I RGGNCCY 1 cut(s) 432
EcoRII CCWGG 1 cut(s) 55
EcoT14I CCWWGG 2 cut(s) 103, 428
ErhI CCWWGG 2 cut(s) 103, 428
FaeI CATG 5 cut(s) 87, 107, 322, 387, 533
FatI CATG 5 cut(s) 83, 103, 318, 383, 529
Fnu4HI GCNGC 5 cut(s) 6, 9, 190, 204, 246
FokI GGATG 2 cut(s) 425, 500
Fsp4HI GCNGC 5 cut(s) 6, 9, 190, 204, 246
FspBI CTAG 2 cut(s) 429, 468
GlaI GCGC 1 cut(s) 188
GluI GCNGC 5 cut(s) 6, 9, 190, 204, 246
GsuI CTGGAG 1 cut(s) 173
HaeIII GGCC 3 cut(s) 5, 102, 433
HgaI GACGC 1 cut(s) 389
HhaI GCGC 1 cut(s) 189
Hin1II CATG 5 cut(s) 87, 107, 322, 387, 533
Hin6I GCGC 1 cut(s) 187
HinP1I GCGC 1 cut(s) 187
HindIII AAGCTT 1 cut(s) 71
HphI GGTGA 4 cut(s) 29, 71, 122, 130
Hpy166II GTNNAC 2 cut(s) 62, 501
Hpy188I TCNGA 1 cut(s) 511
Hpy8I GTNNAC 2 cut(s) 62, 501
HpyCH4III ACNGT 1 cut(s) 332
HpyCH4IV ACGT 1 cut(s) 463
HpyCH4V TGCA 3 cut(s) 259, 299, 461
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 277
HpyF3I CTNAG 2 cut(s) 13, 69
HpySE526I ACGT 1 cut(s) 463
Hsp92II CATG 5 cut(s) 87, 107, 322, 387, 533
HspAI GCGC 1 cut(s) 187
LpnPI CCDG 6 cut(s) 42, 69, 78, 137, 279, 395
Lsp1109I GCAGC 3 cut(s) 20, 190, 232
LweI GCATC 2 cut(s) 308, 403
MaeI CTAG 2 cut(s) 429, 468
MaeII ACGT 1 cut(s) 463
MaeIII GTNAC 1 cut(s) 334
MboII GAAGA 5 cut(s) 152, 353, 356, 413, 503
MfeI CAATTG 1 cut(s) 227
MhlI GDGCHC 2 cut(s) 522, 561
MlsI TGGCCA 1 cut(s) 102
MluCI AATT 2 cut(s) 77, 227
MluNI TGGCCA 1 cut(s) 102
MnlI CCTC 7 cut(s) 22, 33, 101, 127, 130, 165, 232
Mox20I TGGCCA 1 cut(s) 102
MscI TGGCCA 1 cut(s) 102
MseI TTAA 1 cut(s) 75
MslI CAYNNNNRTG 2 cut(s) 108, 266
Msp20I TGGCCA 1 cut(s) 102
MspR9I CCNGG 1 cut(s) 57
MunI CAATTG 1 cut(s) 227
Mva1269I GAATGC 1 cut(s) 317
MvaI CCWGG 1 cut(s) 57
MvnI CGCG 1 cut(s) 189
MwoI GCNNNNNNNGC 2 cut(s) 14, 277
NcoI CCATGG 1 cut(s) 103
NlaIII CATG 5 cut(s) 87, 107, 322, 387, 533
NlaIV GGNNCC 1 cut(s) 434
NmuCI GTSAC 1 cut(s) 334
PctI GAATGC 1 cut(s) 317
PkrI GCNGC 5 cut(s) 7, 10, 191, 205, 247
Psp6I CCWGG 1 cut(s) 55
PspGI CCWGG 1 cut(s) 55
PspN4I GGNNCC 1 cut(s) 434
PspPI GGNCC 1 cut(s) 432
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
RseI CAYNNNNRTG 2 cut(s) 108, 266
SaqAI TTAA 1 cut(s) 75
SatI GCNGC 5 cut(s) 6, 9, 190, 204, 246
Sau96I GGNCC 1 cut(s) 432
ScrFI CCNGG 1 cut(s) 57
SduI GDGCHC 2 cut(s) 522, 561
SfaNI GCATC 2 cut(s) 308, 403
SmiMI CAYNNNNRTG 2 cut(s) 108, 266
SmlI CTYRAG 1 cut(s) 521
SmoI CTYRAG 1 cut(s) 521
Sse9I AATT 2 cut(s) 77, 227
SsiI CCGC 3 cut(s) 6, 189, 192
SspMI CTAG 2 cut(s) 429, 468
StyD4I CCNGG 1 cut(s) 55
StyI CCWWGG 2 cut(s) 103, 428
TaaI ACNGT 1 cut(s) 332
TaiI ACGT 1 cut(s) 466
TaqI TCGA 2 cut(s) 357, 549
TasI AATT 2 cut(s) 77, 227
TauI GCSGC 2 cut(s) 8, 192
Tru1I TTAA 1 cut(s) 75
Tru9I TTAA 1 cut(s) 75
TscAI CASTG 1 cut(s) 312
TseFI GTSAC 1 cut(s) 334
TseI GCWGC 3 cut(s) 8, 203, 245
Tsp45I GTSAC 1 cut(s) 334
TspDTI ATGAA 2 cut(s) 335, 504
TspRI CASTG 1 cut(s) 312
XcmI CCANNNNNNNNNTGG 1 cut(s) 233
XmaJI CCTAGG 1 cut(s) 428
XspI CTAG 2 cut(s) 429, 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.