Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000979

Physical Location & Seq

Genomic Coordinates Reverse (-)

42330907 .. 42336821

Gene Structure 5915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00317180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGAAGCAATATGGTGTCACAGATGAAGAAGCAGAAGTCGAGCTAACTAAACAAGTGAATGACGCATGGCAAGACATAAACGAAGAGTGGCTCAATGCCACCTCTATCCCTAGGCCCCTACTCTTGCTGATTTTGAACTTTGCACGTTCTACTGAAGTTCTATACAAGGGTGAAGATGTGTTTACTCATTCTGAAAATGTGCTCAAGGGTCATAGAGAGAGCTCCTCATCCCTTAGAGGGTTTCCTCTTCTTATTGGACTCCAGTTGAACTTTTACTGTAGTTGGCTTGTTGAACTCACCTCAACCTACGATCATGCTCGAGAAGGATCGCACCCGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00909 map00909

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

113

Amino Acids

12.97

Weight (kDa)

4.8

Isoelectric Point (pI)

44.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000979)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22161 FvH4_3g32081 FvH4_3g32180 FvH4_5g06450 FvH4_6g19300
malus_domestica	MD12G1162800.v1.1 MD12G1163200.v1.1 MD12G1163600.v1.1
prunus_persica	Prupe.4G194000_v2.0.a1 Prupe.4G194700_v2.0.a1 Prupe.4G198800_v2.0.a1
pyrus_communis	pycom07g03220
rosa_chinensis	RchiOBHm_Chr0c17g0499941 RchiOBHm_Chr1g0326031 RchiOBHm_Chr1g0326301 RchiOBHm_Chr4g0406361 RchiOBHm_Chr6g0274881
rosa_laevigata	RLG00000008723 RLG00000014166 RLG00000033702
rosa_multiflora	Rmu_sc0000149.1_g000030 Rmu_sc0001353.1_g000008 Rmu_sc0006272.1_g000013 Rmu_sc0008056.1_g000001 Rmu_sc0011910.1_g000003 Rmu_sc0019563.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044360 Rroxscaffold_2G00123050 Rroxscaffold_2G00127900 Rroxscaffold_2G00128770 Rroxscaffold_3G00225480 Rroxscaffold_3G00235290 Rroxscaffold_4G00317180 Rroxscaffold_4G00320650 Rroxscaffold_4G00320660 Rroxscaffold_6G00393300
rosa_samantha	Rh1BG062100 Rh1CG074300 Rh1DG080600 Rh1DG081600 Rh3BG331000 Rh3CG216000 Rh3CG216300 Rh3CG216700 Rh3DG216700 Rh3DG328000 Rh3DG328300 Rh4CG145600 Rh5CG282500 Rh5DG271000 Rh5DG275500 Rh5DG312500 Rh5DG416000 Rh5DG454000 Rh6BG141200 Rh6BG178000 Rh6BG178100 Rh6BG178200 Rh6CG137600 Rh6CG174100 Rh6CG205100 Rh6CG272400 Rh6DG195900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	334
AcuI	CTGAAG	1 cut(s)	174
AfiI	CCNNNNNNNGG	1 cut(s)	237
AgsI	TTSAA	3 cut(s)	136, 268, 293
AluBI	AGCT	2 cut(s)	43, 222
AluI	AGCT	2 cut(s)	43, 222
Alw21I	GWGCWC	2 cut(s)	204, 224
AlwI	GGATC	1 cut(s)	334
Ama87I	CYCGRG	1 cut(s)	318
AoxI	GGCC	1 cut(s)	113
AspA2I	CCTAGG	1 cut(s)	110
AspS9I	GGNCC	1 cut(s)	114
AsuC2I	CCSGG	1 cut(s)	335
AsuHPI	GGTGA	2 cut(s)	182, 289
AvaI	CYCGRG	1 cut(s)	318
AvrII	CCTAGG	1 cut(s)	110
BanII	GRGCYC	1 cut(s)	224
Bbv12I	GWGCWC	2 cut(s)	204, 224
BcnI	CCSGG	1 cut(s)	335
BfaI	CTAG	1 cut(s)	111
BfmI	CTRYAG	1 cut(s)	277
BlnI	CCTAGG	1 cut(s)	110
Bme1390I	CCNGG	1 cut(s)	335
BmeT110I	CYCGRG	1 cut(s)	318
BmgT120I	GGNCC	1 cut(s)	114
BmiI	GGNNCC	1 cut(s)	116
BmrFI	CCNGG	1 cut(s)	335
BplI	GAGNNNNNCTC	2 cut(s)	209, 241
BpmI	CTGGAG	1 cut(s)	245
BpuEI	CTTGAG	1 cut(s)	188
BpuMI	CCSGG	1 cut(s)	335
BsaJI	CCNNGG	1 cut(s)	110
Bsc4I	CCNNNNNNNGG	1 cut(s)	237
Bse1I	ACTGG	1 cut(s)	262
BseDI	CCNNGG	1 cut(s)	110
BseGI	GGATG	1 cut(s)	227
BseLI	CCNNNNNNNGG	1 cut(s)	237
BseNI	ACTGG	1 cut(s)	262
BseRI	GAGGAG	1 cut(s)	214
BshFI	GGCC	1 cut(s)	115
BsiHKAI	GWGCWC	2 cut(s)	204, 224
BsiHKCI	CYCGRG	1 cut(s)	318
BsiSI	CCGG	1 cut(s)	335
BslI	CCNNNNNNNGG	1 cut(s)	237
BsnI	GGCC	1 cut(s)	115
BsoBI	CYCGRG	1 cut(s)	318
Bsp1286I	GDGCHC	2 cut(s)	204, 224
Bsp143I	GATC	2 cut(s)	310, 326
BspANI	GGCC	1 cut(s)	115
BspLI	GGNNCC	1 cut(s)	116
BspPI	GGATC	1 cut(s)	334
BsrI	ACTGG	1 cut(s)	262
BssECI	CCNNGG	1 cut(s)	110
BssMI	GATC	2 cut(s)	310, 326
BssT1I	CCWWGG	1 cut(s)	110
Bst4CI	ACNGT	1 cut(s)	278
Bst6I	CTCTTC	2 cut(s)	78, 252
BstDEI	CTNAG	1 cut(s)	233
BstF5I	GGATG	1 cut(s)	227
BstKTI	GATC	2 cut(s)	313, 329
BstMBI	GATC	2 cut(s)	310, 326
BstSCI	CCNGG	1 cut(s)	333
BstSFI	CTRYAG	1 cut(s)	277
BsuRI	GGCC	1 cut(s)	115
BtsCI	GGATG	1 cut(s)	227
Cfr13I	GGNCC	1 cut(s)	114
CseI	GACGC	1 cut(s)	71
CviAII	CATG	2 cut(s)	66, 314
CviJI	RGCY	5 cut(s)	43, 91, 115, 222, 286
CviKI_1	RGCY	5 cut(s)	43, 91, 115, 222, 286
DdeI	CTNAG	1 cut(s)	233
DpnI	GATC	2 cut(s)	312, 328
DpnII	GATC	2 cut(s)	310, 326
Eam1104I	CTCTTC	2 cut(s)	78, 252
EarI	CTCTTC	2 cut(s)	78, 252
Ecl136II	GAGCTC	1 cut(s)	222
Eco130I	CCWWGG	1 cut(s)	110
Eco24I	GRGCYC	1 cut(s)	224
Eco53kI	GAGCTC	1 cut(s)	222
Eco57I	CTGAAG	1 cut(s)	174
Eco88I	CYCGRG	1 cut(s)	318
EcoICRI	GAGCTC	1 cut(s)	222
EcoO109I	RGGNCCY	1 cut(s)	114
EcoT14I	CCWWGG	1 cut(s)	110
EcoT38I	GRGCYC	1 cut(s)	224
ErhI	CCWWGG	1 cut(s)	110
FaeI	CATG	2 cut(s)	69, 317
FaiI	YATR	6 cut(s)	12, 67, 77, 163, 213, 315
FatI	CATG	2 cut(s)	65, 313
FokI	GGATG	1 cut(s)	214
FriOI	GRGCYC	1 cut(s)	224
FspBI	CTAG	1 cut(s)	111
GsuI	CTGGAG	1 cut(s)	245
HaeIII	GGCC	1 cut(s)	115
HapII	CCGG	1 cut(s)	335
HgaI	GACGC	1 cut(s)	71
Hin1II	CATG	2 cut(s)	69, 317
HinfI	GANTC	1 cut(s)	258
HpaII	CCGG	1 cut(s)	335
HphI	GGTGA	2 cut(s)	182, 289
Hpy166II	GTNNAC	1 cut(s)	183
Hpy188I	TCNGA	1 cut(s)	193
Hpy188III	TCNNGA	1 cut(s)	320
Hpy8I	GTNNAC	1 cut(s)	183
HpyAV	CCTTC	1 cut(s)	317
HpyCH4III	ACNGT	1 cut(s)	278
HpyCH4IV	ACGT	1 cut(s)	145
HpyCH4V	TGCA	1 cut(s)	143
HpyF3I	CTNAG	1 cut(s)	233
HpySE526I	ACGT	1 cut(s)	145
Hsp92II	CATG	2 cut(s)	69, 317
Kzo9I	GATC	2 cut(s)	310, 326
LmnI	GCTCC	1 cut(s)	227
LpnPI	CCDG	1 cut(s)	275
MaeI	CTAG	1 cut(s)	111
MaeII	ACGT	1 cut(s)	145
MaeIII	GTNAC	1 cut(s)	16
MalI	GATC	2 cut(s)	312, 328
MboI	GATC	2 cut(s)	310, 326
MboII	GAAGA	4 cut(s)	38, 95, 185, 239
MhlI	GDGCHC	2 cut(s)	204, 224
MlyI	GAGTC	1 cut(s)	252
MnlI	CCTC	5 cut(s)	112, 230, 235, 255, 310
MspI	CCGG	1 cut(s)	335
MspR9I	CCNGG	1 cut(s)	335
NciI	CCSGG	1 cut(s)	335
NdeII	GATC	2 cut(s)	310, 326
NlaIII	CATG	2 cut(s)	69, 317
NlaIV	GGNNCC	1 cut(s)	116
NmuCI	GTSAC	1 cut(s)	16
PaeR7I	CTCGAG	1 cut(s)	318
PleI	GAGTC	1 cut(s)	252
PpsI	GAGTC	1 cut(s)	252
Psp124BI	GAGCTC	1 cut(s)	224
PspN4I	GGNNCC	1 cut(s)	116
PspPI	GGNCC	1 cut(s)	114
SacI	GAGCTC	1 cut(s)	224
Sau3AI	GATC	2 cut(s)	310, 326
Sau96I	GGNCC	1 cut(s)	114
SchI	GAGTC	1 cut(s)	252
ScrFI	CCNGG	1 cut(s)	335
SduI	GDGCHC	2 cut(s)	204, 224
SetI	ASST	6 cut(s)	45, 104, 148, 224, 302, 308
SfcI	CTRYAG	1 cut(s)	277
Sfr274I	CTCGAG	1 cut(s)	318
SlaI	CTCGAG	1 cut(s)	318
SmlI	CTYRAG	2 cut(s)	203, 318
SmoI	CTYRAG	2 cut(s)	203, 318
SspMI	CTAG	1 cut(s)	111
SstI	GAGCTC	1 cut(s)	224
StyD4I	CCNGG	1 cut(s)	333
StyI	CCWWGG	1 cut(s)	110
TaaI	ACNGT	1 cut(s)	278
TaiI	ACGT	1 cut(s)	148
TaqI	TCGA	2 cut(s)	39, 319
TseFI	GTSAC	1 cut(s)	16
Tsp45I	GTSAC	1 cut(s)	16
TspDTI	ATGAA	2 cut(s)	17, 39
XhoI	CTCGAG	1 cut(s)	318
XmaJI	CCTAGG	1 cut(s)	110
XspI	CTAG	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.