RchiOBHm_Chr1g0326031

synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000979
Physical Location & Seq
Forward (+)
14199860 .. 14200504
645 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55568

Sequence Viewer

Length: 444 bp
ATGTTTACGGTGGAAGCAACATTTATCGTTGCAATAGCTGGTGATATTCTTACAAGAGATTCCTTGGACTGGTTGTTCAGTGATCCTAAATTTGTAAAGGCTTCATCGATAATTGGGAGACTCTTGAATGACATCCGAAGCCACAAGCTTGAGCAAAAGAGAGGACATGTTGTCTCAGCTGTGGAATGCTATATGAAAGAACACTGTGCTACAGAAGAAGTAGCGGTGATTGAACTGACTAAACATGTAAATGATGCATGGGCGGATGTAAACGAAGGATTGCTTCACCCTATCGCTACTGTCCCTAGGCCACTACTATTGCTAATTCTCAATTTTCTACGCGTAACTGATGTTATATACAAGCGTGAAGATGGTTATACTCATGGTGGAGTTGTGCTCAAGGATTATATAACTTCTCTTCTTGTCGAACATGTTCCAATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 map00909
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

147

Amino Acids

16.55

Weight (kDa)

5.76

Isoelectric Point (pI)

37.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_syn_C_2 PF19086 9 - 89 2.6e-19 Terpene synthase family 2, C-terminal metal binding
Terpene_synth_C PF03936 10 - 89 2.8e-25 Terpene synthase family, metal binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 342
AciI CCGC 2 cut(s) 224, 263
AclWI GGATC 1 cut(s) 77
AcsI RAATTY 1 cut(s) 89
AfiI CCNNNNNNNGG 1 cut(s) 69
AflIII ACRYGT 4 cut(s) 166, 244, 340, 430
AgsI TTSAA 2 cut(s) 127, 233
AhdI GACNNNNNGTC 1 cut(s) 170
AloI GAACNNNNNNTCC 2 cut(s) 59, 91
AluBI AGCT 3 cut(s) 38, 148, 179
AluI AGCT 3 cut(s) 38, 148, 179
Alw21I GWGCWC 1 cut(s) 399
Alw26I GTCTC 2 cut(s) 112, 178
AlwI GGATC 1 cut(s) 77
AoxI GGCC 1 cut(s) 308
ApoI RAATTY 1 cut(s) 89
Asp700I GAANNNNTTC 1 cut(s) 432
AspA2I CCTAGG 1 cut(s) 305
AsuHPI GGTGA 3 cut(s) 53, 238, 278
AvrII CCTAGG 1 cut(s) 305
Bbv12I GWGCWC 1 cut(s) 399
BccI CCATC 1 cut(s) 365
BcoDI GTCTC 2 cut(s) 112, 178
BfaI CTAG 1 cut(s) 306
BfmI CTRYAG 1 cut(s) 210
BlnI CCTAGG 1 cut(s) 305
BmeRI GACNNNNNGTC 1 cut(s) 170
BmsI GCATC 1 cut(s) 244
BplI GAGNNNNNCTC 2 cut(s) 381, 413
BpuEI CTTGAG 2 cut(s) 170, 383
Bsa29I ATCGAT 1 cut(s) 107
BsaJI CCNNGG 2 cut(s) 63, 305
Bsc4I CCNNNNNNNGG 1 cut(s) 69
Bse1I ACTGG 1 cut(s) 74
BseCI ATCGAT 1 cut(s) 107
BseDI CCNNGG 2 cut(s) 63, 305
BseGI GGATG 2 cut(s) 132, 271
BseLI CCNNNNNNNGG 1 cut(s) 69
BseMII CTCAG 1 cut(s) 189
BseNI ACTGG 1 cut(s) 74
Bsh1236I CGCG 1 cut(s) 342
BshFI GGCC 1 cut(s) 310
BshVI ATCGAT 1 cut(s) 107
BsiHKAI GWGCWC 1 cut(s) 399
BslFI GGGAC 1 cut(s) 287
BslI CCNNNNNNNGG 1 cut(s) 69
BsmAI GTCTC 2 cut(s) 112, 178
BsmFI GGGAC 1 cut(s) 287
BsmI GAATGC 1 cut(s) 191
BsnI GGCC 1 cut(s) 310
Bsp1286I GDGCHC 1 cut(s) 399
Bsp143I GATC 1 cut(s) 82
BspACI CCGC 2 cut(s) 224, 263
BspANI GGCC 1 cut(s) 310
BspCNI CTCAG 1 cut(s) 188
BspDI ATCGAT 1 cut(s) 107
BspFNI CGCG 1 cut(s) 342
BspPI GGATC 1 cut(s) 77
BsrI ACTGG 1 cut(s) 74
BssECI CCNNGG 2 cut(s) 63, 305
BssMI GATC 1 cut(s) 82
BssT1I CCWWGG 2 cut(s) 63, 305
Bst4CI ACNGT 3 cut(s) 10, 206, 301
Bst6I CTCTTC 1 cut(s) 423
BstDEI CTNAG 1 cut(s) 175
BstF5I GGATG 2 cut(s) 132, 271
BstFNI CGCG 1 cut(s) 342
BstKTI GATC 1 cut(s) 85
BstMAI GTCTC 2 cut(s) 112, 178
BstMBI GATC 1 cut(s) 82
BstNSI RCATGY 3 cut(s) 170, 248, 434
BstSFI CTRYAG 1 cut(s) 210
BstUI CGCG 1 cut(s) 342
Bsu15I ATCGAT 1 cut(s) 107
BsuRI GGCC 1 cut(s) 310
BsuTUI ATCGAT 1 cut(s) 107
BtsCI GGATG 2 cut(s) 132, 271
BtsIMutI CAGTG 2 cut(s) 85, 202
ClaI ATCGAT 1 cut(s) 107
CspCI CAANNNNNGTGG 2 cut(s) 300, 335
CviAII CATG 5 cut(s) 167, 245, 258, 383, 431
CviJI RGCY 6 cut(s) 38, 101, 141, 148, 179, 310
CviKI_1 RGCY 6 cut(s) 38, 101, 141, 148, 179, 310
DdeI CTNAG 1 cut(s) 175
DpnI GATC 1 cut(s) 84
DpnII GATC 1 cut(s) 82
DriI GACNNNNNGTC 1 cut(s) 170
Eam1104I CTCTTC 1 cut(s) 423
Eam1105I GACNNNNNGTC 1 cut(s) 170
EarI CTCTTC 1 cut(s) 423
EciI GGCGGA 1 cut(s) 278
Eco130I CCWWGG 2 cut(s) 63, 305
EcoT14I CCWWGG 2 cut(s) 63, 305
EcoT22I ATGCAT 1 cut(s) 259
ErhI CCWWGG 2 cut(s) 63, 305
FaeI CATG 5 cut(s) 170, 248, 261, 386, 434
FalI AAGNNNNNCTT 2 cut(s) 267, 299
FaqI GGGAC 1 cut(s) 287
FatI CATG 5 cut(s) 166, 244, 257, 382, 430
FokI GGATG 2 cut(s) 119, 278
FspBI CTAG 1 cut(s) 306
HaeIII GGCC 1 cut(s) 310
Hin1II CATG 5 cut(s) 170, 248, 261, 386, 434
HindIII AAGCTT 1 cut(s) 146
HinfI GANTC 2 cut(s) 59, 120
HphI GGTGA 3 cut(s) 53, 238, 278
Hpy166II GTNNAC 2 cut(s) 6, 271
Hpy188I TCNGA 1 cut(s) 137
Hpy188III TCNNGA 1 cut(s) 124
Hpy8I GTNNAC 2 cut(s) 6, 271
HpyAV CCTTC 1 cut(s) 269
HpyCH4III ACNGT 3 cut(s) 10, 206, 301
HpyCH4V TGCA 2 cut(s) 32, 257
HpyF3I CTNAG 1 cut(s) 175
Hsp92II CATG 5 cut(s) 170, 248, 261, 386, 434
Kzo9I GATC 1 cut(s) 82
LpnPI CCDG 2 cut(s) 24, 55
LweI GCATC 1 cut(s) 244
MaeI CTAG 1 cut(s) 306
MaeIII GTNAC 1 cut(s) 343
MalI GATC 1 cut(s) 84
MboI GATC 1 cut(s) 82
MboII GAAGA 3 cut(s) 227, 380, 410
MhlI GDGCHC 1 cut(s) 399
MluCI AATT 4 cut(s) 89, 111, 324, 331
MluI ACGCGT 1 cut(s) 340
MlyI GAGTC 1 cut(s) 114
MnlI CCTC 1 cut(s) 155
Mph1103I ATGCAT 1 cut(s) 259
MroXI GAANNNNTTC 1 cut(s) 432
MslI CAYNNNNRTG 1 cut(s) 249
MspA1I CMGCKG 1 cut(s) 179
Mva1269I GAATGC 1 cut(s) 191
MvnI CGCG 1 cut(s) 342
NdeII GATC 1 cut(s) 82
NlaIII CATG 5 cut(s) 170, 248, 261, 386, 434
NsiI ATGCAT 1 cut(s) 259
NspI RCATGY 3 cut(s) 170, 248, 434
PciI ACATGT 3 cut(s) 166, 244, 430
PctI GAATGC 1 cut(s) 191
PdmI GAANNNNTTC 1 cut(s) 432
PfeI GAWTC 1 cut(s) 59
PleI GAGTC 1 cut(s) 114
PpsI GAGTC 1 cut(s) 114
PscI ACATGT 3 cut(s) 166, 244, 430
PvuII CAGCTG 1 cut(s) 179
RseI CAYNNNNRTG 1 cut(s) 249
Sau3AI GATC 1 cut(s) 82
SchI GAGTC 1 cut(s) 114
SduI GDGCHC 1 cut(s) 399
SetI ASST 3 cut(s) 40, 150, 181
SfaNI GCATC 1 cut(s) 244
SfcI CTRYAG 1 cut(s) 210
SmiMI CAYNNNNRTG 1 cut(s) 249
SmlI CTYRAG 2 cut(s) 149, 398
SmoI CTYRAG 2 cut(s) 149, 398
Sse9I AATT 4 cut(s) 89, 111, 324, 331
SsiI CCGC 2 cut(s) 224, 263
SspMI CTAG 1 cut(s) 306
StyI CCWWGG 2 cut(s) 63, 305
TaaI ACNGT 3 cut(s) 10, 206, 301
TaqI TCGA 2 cut(s) 107, 426
TasI AATT 4 cut(s) 89, 111, 324, 331
TfiI GAWTC 1 cut(s) 59
TscAI CASTG 2 cut(s) 85, 209
TspDTI ATGAA 2 cut(s) 93, 209
TspRI CASTG 2 cut(s) 85, 209
XapI RAATTY 1 cut(s) 89
XceI RCATGY 3 cut(s) 170, 248, 434
XmaJI CCTAGG 1 cut(s) 305
XmnI GAANNNNTTC 1 cut(s) 432
XspI CTAG 1 cut(s) 306
Zsp2I ATGCAT 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.