Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000979

Physical Location & Seq

Genomic Coordinates Forward (+)

33724240 .. 33731159

Gene Structure 6920 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG275500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGTCAACCCAATCTGGTTTAGCTCCTCATCCATCACAAACCACCATGTCTGAAATTGCTGGTCTGACAGCAAACTTTCAATCGGCCGGCATTTGCGGTGATGGATTCATCAACTGTGATTTACTAGACAACTTTCCGAAACAGAAAGGGGACGTTGCTTCTAGTATTGATTGCTACATGAAACAATATAGGGTCTCAGATGAAGAGACAATCGATGCGTTTAACAAACAAATTGTAGATTCATGGAAAGGAATAAATGAGGATTTTCTTCGACCAACTGCTGTGCCAATGTCTGTGCTCATGCGTGTTCTTAATTTCACAAGAGTTGTTGATCTGATTTACAAAGAAGAAGATGGCTTTACACATGTTGGGAAAGTAGTAAAACATGGTGTCGCTGCACTTTTTGTTGATCCATTGCCACTCGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00909 map00909

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

142

Amino Acids

15.64

Weight (kDa)

4.83

Isoelectric Point (pI)

43.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Terpene_synth_C	PF03936	47 - 83	1.8e-08	Terpene synthase family, metal binding domain
Terpene_syn_C_2	PF19086	48 - 83	3e-06	Terpene synthase family 2, C-terminal metal binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000979)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22161 FvH4_3g32081 FvH4_3g32180 FvH4_5g06450 FvH4_6g19300
malus_domestica	MD12G1162800.v1.1 MD12G1163200.v1.1 MD12G1163600.v1.1
prunus_persica	Prupe.4G194000_v2.0.a1 Prupe.4G194700_v2.0.a1 Prupe.4G198800_v2.0.a1
pyrus_communis	pycom07g03220
rosa_chinensis	RchiOBHm_Chr0c17g0499941 RchiOBHm_Chr1g0326031 RchiOBHm_Chr1g0326301 RchiOBHm_Chr4g0406361 RchiOBHm_Chr6g0274881
rosa_laevigata	RLG00000008723 RLG00000014166 RLG00000033702
rosa_multiflora	Rmu_sc0000149.1_g000030 Rmu_sc0001353.1_g000008 Rmu_sc0006272.1_g000013 Rmu_sc0008056.1_g000001 Rmu_sc0011910.1_g000003 Rmu_sc0019563.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044360 Rroxscaffold_2G00123050 Rroxscaffold_2G00127900 Rroxscaffold_2G00128770 Rroxscaffold_3G00225480 Rroxscaffold_3G00235290 Rroxscaffold_4G00317180 Rroxscaffold_4G00320650 Rroxscaffold_4G00320660 Rroxscaffold_6G00393300
rosa_samantha	Rh1BG062100 Rh1CG074300 Rh1DG080600 Rh1DG081600 Rh3BG331000 Rh3CG216000 Rh3CG216300 Rh3CG216700 Rh3DG216700 Rh3DG328000 Rh3DG328300 Rh4CG145600 Rh5CG282500 Rh5DG271000 Rh5DG275500 Rh5DG312500 Rh5DG416000 Rh5DG454000 Rh6BG141200 Rh6BG178000 Rh6BG178100 Rh6BG178200 Rh6CG137600 Rh6CG174100 Rh6CG205100 Rh6CG272400 Rh6DG195900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	96
AclWI	GGATC	1 cut(s)	404
AcoI	YGGCCR	1 cut(s)	84
AflIII	ACRYGT	1 cut(s)	364
AgsI	TTSAA	1 cut(s)	80
AluBI	AGCT	1 cut(s)	23
AluI	AGCT	1 cut(s)	23
Alw21I	GWGCWC	1 cut(s)	300
Alw26I	GTCTC	2 cut(s)	199, 200
AlwI	GGATC	1 cut(s)	404
AoxI	GGCC	1 cut(s)	84
ApeKI	GCWGC	1 cut(s)	395
AsuHPI	GGTGA	1 cut(s)	110
Bbv12I	GWGCWC	1 cut(s)	300
BbvI	GCAGC	1 cut(s)	382
BccI	CCATC	3 cut(s)	40, 95, 347
BcoDI	GTCTC	2 cut(s)	199, 200
BfaI	CTAG	2 cut(s)	125, 162
BisI	GCNGC	1 cut(s)	396
BlsI	GCNGC	1 cut(s)	397
BmsI	GCATC	1 cut(s)	205
Bsa29I	ATCGAT	1 cut(s)	213
BsaI	GGTCTC	1 cut(s)	199
Bse118I	RCCGGY	1 cut(s)	86
Bse3DI	GCAATG	1 cut(s)	413
BseCI	ATCGAT	1 cut(s)	213
BseGI	GGATG	1 cut(s)	28
BseMI	GCAATG	1 cut(s)	413
BseMII	CTCAG	1 cut(s)	210
BseRI	GAGGAG	1 cut(s)	15
BseX3I	CGGCCG	1 cut(s)	84
BseXI	GCAGC	1 cut(s)	382
BsgI	GTGCAG	1 cut(s)	381
Bsh1285I	CGRYCG	1 cut(s)	87
BshFI	GGCC	1 cut(s)	86
BshVI	ATCGAT	1 cut(s)	213
BsiEI	CGRYCG	1 cut(s)	87
BsiHKAI	GWGCWC	1 cut(s)	300
BsiSI	CCGG	1 cut(s)	87
BslFI	GGGAC	1 cut(s)	164
BsmAI	GTCTC	2 cut(s)	199, 200
BsmFI	GGGAC	1 cut(s)	164
BsnI	GGCC	1 cut(s)	86
Bso31I	GGTCTC	1 cut(s)	199
Bsp1286I	GDGCHC	1 cut(s)	300
Bsp143I	GATC	2 cut(s)	331, 409
BspACI	CCGC	1 cut(s)	96
BspANI	GGCC	1 cut(s)	86
BspCNI	CTCAG	1 cut(s)	209
BspDI	ATCGAT	1 cut(s)	213
BspPI	GGATC	1 cut(s)	404
BspTNI	GGTCTC	1 cut(s)	199
BsrDI	GCAATG	1 cut(s)	413
BsrFI	RCCGGY	1 cut(s)	86
BssAI	RCCGGY	1 cut(s)	86
BssMI	GATC	2 cut(s)	331, 409
Bst4CI	ACNGT	1 cut(s)	116
Bst6I	CTCTTC	1 cut(s)	198
BstC8I	GCNNGC	1 cut(s)	88
BstDEI	CTNAG	1 cut(s)	196
BstF5I	GGATG	1 cut(s)	28
BstKTI	GATC	2 cut(s)	334, 412
BstMAI	GTCTC	2 cut(s)	199, 200
BstMBI	GATC	2 cut(s)	331, 409
BstMCI	CGRYCG	1 cut(s)	87
BstNSI	RCATGY	1 cut(s)	368
BstV1I	GCAGC	1 cut(s)	382
BstZI	CGGCCG	1 cut(s)	84
Bsu15I	ATCGAT	1 cut(s)	213
BsuRI	GGCC	1 cut(s)	86
BsuTUI	ATCGAT	1 cut(s)	213
BtsCI	GGATG	1 cut(s)	28
Cac8I	GCNNGC	1 cut(s)	88
Cfr10I	RCCGGY	1 cut(s)	86
ClaI	ATCGAT	1 cut(s)	213
CviAII	CATG	6 cut(s)	46, 178, 243, 301, 365, 386
CviJI	RGCY	3 cut(s)	23, 86, 357
CviKI_1	RGCY	3 cut(s)	23, 86, 357
DdeI	CTNAG	1 cut(s)	196
DpnI	GATC	2 cut(s)	333, 411
DpnII	GATC	2 cut(s)	331, 409
EaeI	YGGCCR	1 cut(s)	84
EagI	CGGCCG	1 cut(s)	84
Eam1104I	CTCTTC	1 cut(s)	198
EarI	CTCTTC	1 cut(s)	198
EclXI	CGGCCG	1 cut(s)	84
Eco31I	GGTCTC	1 cut(s)	199
Eco52I	CGGCCG	1 cut(s)	84
FaeI	CATG	6 cut(s)	49, 181, 246, 304, 368, 389
FaiI	YATR	7 cut(s)	47, 179, 189, 244, 302, 366, 387
FaqI	GGGAC	1 cut(s)	164
FatI	CATG	6 cut(s)	45, 177, 242, 300, 364, 385
Fnu4HI	GCNGC	1 cut(s)	396
FokI	GGATG	1 cut(s)	15
Fsp4HI	GCNGC	1 cut(s)	396
FspBI	CTAG	2 cut(s)	125, 162
GluI	GCNGC	1 cut(s)	396
HaeIII	GGCC	1 cut(s)	86
HapII	CCGG	1 cut(s)	87
Hin1II	CATG	6 cut(s)	49, 181, 246, 304, 368, 389
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	2 cut(s)	105, 239
HpaII	CCGG	1 cut(s)	87
HphI	GGTGA	1 cut(s)	110
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	5 cut(s)	52, 66, 138, 199, 336
Hpy8I	GTNNAC	1 cut(s)	6
HpyCH4III	ACNGT	1 cut(s)	116
HpyCH4IV	ACGT	1 cut(s)	153
HpyCH4V	TGCA	1 cut(s)	398
HpyF3I	CTNAG	1 cut(s)	196
HpySE526I	ACGT	1 cut(s)	153
Hsp92II	CATG	6 cut(s)	49, 181, 246, 304, 368, 389
KroI	GCCGGC	1 cut(s)	86
KroNI	GCCGGC	1 cut(s)	88
Kzo9I	GATC	2 cut(s)	331, 409
LmnI	GCTCC	1 cut(s)	28
LpnPI	CCDG	2 cut(s)	45, 100
Lsp1109I	GCAGC	1 cut(s)	382
LweI	GCATC	1 cut(s)	205
MaeI	CTAG	2 cut(s)	125, 162
MaeII	ACGT	1 cut(s)	153
MalI	GATC	2 cut(s)	333, 411
MboI	GATC	2 cut(s)	331, 409
MboII	GAAGA	4 cut(s)	215, 260, 359, 362
MhlI	GDGCHC	1 cut(s)	300
MluCI	AATT	3 cut(s)	54, 231, 313
MnlI	CCTC	2 cut(s)	36, 253
MroNI	GCCGGC	1 cut(s)	86
MseI	TTAA	2 cut(s)	222, 312
MslI	CAYNNNNRTG	1 cut(s)	424
MspI	CCGG	1 cut(s)	87
NaeI	GCCGGC	1 cut(s)	88
NdeII	GATC	2 cut(s)	331, 409
NgoMIV	GCCGGC	1 cut(s)	86
NlaIII	CATG	6 cut(s)	49, 181, 246, 304, 368, 389
NspI	RCATGY	1 cut(s)	368
PciI	ACATGT	1 cut(s)	364
PdiI	GCCGGC	1 cut(s)	88
PfeI	GAWTC	2 cut(s)	105, 239
PkrI	GCNGC	1 cut(s)	397
PscI	ACATGT	1 cut(s)	364
RseI	CAYNNNNRTG	1 cut(s)	424
SaqAI	TTAA	2 cut(s)	222, 312
SatI	GCNGC	1 cut(s)	396
Sau3AI	GATC	2 cut(s)	331, 409
SduI	GDGCHC	1 cut(s)	300
SetI	ASST	2 cut(s)	25, 156
SfaNI	GCATC	1 cut(s)	205
SmiMI	CAYNNNNRTG	1 cut(s)	424
Sse9I	AATT	3 cut(s)	54, 231, 313
SsiI	CCGC	1 cut(s)	96
SspMI	CTAG	2 cut(s)	125, 162
TaaI	ACNGT	1 cut(s)	116
TaiI	ACGT	1 cut(s)	156
TaqI	TCGA	3 cut(s)	213, 271, 423
TasI	AATT	3 cut(s)	54, 231, 313
TfiI	GAWTC	2 cut(s)	105, 239
Tru1I	TTAA	2 cut(s)	222, 312
Tru9I	TTAA	2 cut(s)	222, 312
TseI	GCWGC	1 cut(s)	395
TspDTI	ATGAA	4 cut(s)	97, 194, 216, 231
XceI	RCATGY	1 cut(s)	368
XspI	CTAG	2 cut(s)	125, 162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.