Rh6BG141200

(-)-alpha-pinene synthase-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Reverse (-)
22515725 .. 22516319
595 bp
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UTR
Exon/CDS
Intron
Rh6BG141200.1

Sequence Viewer

Length: 324 bp
ATGTCAAAGGAAGGAAGATCATACCGAGTTTGCTACGCTATACAAGCTATGAAAGATCAAGCCCGATCGTATTTCAATGAGGCCCAATGGTTGCACGAAGGACGCATTCCGAGCATGGAGGAGTATATGAGTGTTGCTACTGTTTCAATTAGTTACACTTTTCTAACAACCATTTCATTACTTGGCATGGGAGATATTGTAACGAAGGACGCATTTGAGTGGTTGTTGAATGACCCAAAAATTGTTAGAGCTTCCAATGTCATTTTTAGGCTTATGGATGACATTGTTTCCACCAAGGTACATATATATACACTTTACACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

107

Amino Acids

12.37

Weight (kDa)

6.06

Isoelectric Point (pI)

34.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth_C PF03936 1 - 99 3.2e-32 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 2 - 99 2.2e-25 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 300
AgsI TTSAA 3 cut(s) 76, 147, 229
AluBI AGCT 2 cut(s) 47, 251
AluI AGCT 2 cut(s) 47, 251
AoxI GGCC 1 cut(s) 81
AspS9I GGNCC 1 cut(s) 82
BmgT120I GGNCC 1 cut(s) 82
BsaJI CCNNGG 1 cut(s) 294
BsaXI ACNNNNNCTCC 2 cut(s) 183, 213
BseDI CCNNGG 1 cut(s) 294
BseGI GGATG 1 cut(s) 283
BseRI GAGGAG 1 cut(s) 134
Bsh1285I CGRYCG 1 cut(s) 68
BshFI GGCC 1 cut(s) 83
BsiEI CGRYCG 1 cut(s) 68
BsmI GAATGC 1 cut(s) 105
BsnI GGCC 1 cut(s) 83
Bsp143I GATC 3 cut(s) 17, 55, 65
BspANI GGCC 1 cut(s) 83
BssECI CCNNGG 1 cut(s) 294
BssMI GATC 3 cut(s) 17, 55, 65
BssT1I CCWWGG 1 cut(s) 294
Bst4CI ACNGT 1 cut(s) 142
BstF5I GGATG 1 cut(s) 283
BstKTI GATC 3 cut(s) 20, 58, 68
BstMBI GATC 3 cut(s) 17, 55, 65
BstMCI CGRYCG 1 cut(s) 68
BstMWI GCNNNNNNNGC 2 cut(s) 44, 111
BsuRI GGCC 1 cut(s) 83
BtsCI GGATG 1 cut(s) 283
Cfr13I GGNCC 1 cut(s) 82
CseI GACGC 2 cut(s) 111, 218
Csp6I GTAC 1 cut(s) 299
CviAII CATG 2 cut(s) 115, 187
CviJI RGCY 5 cut(s) 47, 62, 83, 251, 271
CviKI_1 RGCY 5 cut(s) 47, 62, 83, 251, 271
CviQI GTAC 1 cut(s) 299
DpnI GATC 3 cut(s) 19, 57, 67
DpnII GATC 3 cut(s) 17, 55, 65
Eco130I CCWWGG 1 cut(s) 294
EcoT14I CCWWGG 1 cut(s) 294
ErhI CCWWGG 1 cut(s) 294
FaeI CATG 2 cut(s) 118, 190
FatI CATG 2 cut(s) 114, 186
FokI GGATG 1 cut(s) 290
HaeIII GGCC 1 cut(s) 83
HgaI GACGC 2 cut(s) 111, 218
Hin1II CATG 2 cut(s) 118, 190
Hpy188I TCNGA 1 cut(s) 111
HpyAV CCTTC 3 cut(s) 5, 92, 199
HpyCH4III ACNGT 1 cut(s) 142
HpyCH4V TGCA 1 cut(s) 94
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 111
Hsp92II CATG 2 cut(s) 118, 190
Kzo9I GATC 3 cut(s) 17, 55, 65
MaeIII GTNAC 2 cut(s) 152, 199
MalI GATC 3 cut(s) 19, 57, 67
MboI GATC 3 cut(s) 17, 55, 65
MboII GAAGA 1 cut(s) 27
MluCI AATT 2 cut(s) 147, 240
MnlI CCTC 2 cut(s) 73, 112
MseI TTAA 1 cut(s) 322
MslI CAYNNNNRTG 1 cut(s) 217
Mva1269I GAATGC 1 cut(s) 105
MwoI GCNNNNNNNGC 2 cut(s) 44, 111
NdeII GATC 3 cut(s) 17, 55, 65
NlaIII CATG 2 cut(s) 118, 190
PctI GAATGC 1 cut(s) 105
Ple19I CGATCG 1 cut(s) 68
PspPI GGNCC 1 cut(s) 82
PvuI CGATCG 1 cut(s) 68
RsaI GTAC 1 cut(s) 300
RsaNI GTAC 1 cut(s) 299
RseI CAYNNNNRTG 1 cut(s) 217
SaqAI TTAA 1 cut(s) 322
Sau3AI GATC 3 cut(s) 17, 55, 65
Sau96I GGNCC 1 cut(s) 82
SetI ASST 3 cut(s) 49, 253, 300
SmiMI CAYNNNNRTG 1 cut(s) 217
Sse9I AATT 2 cut(s) 147, 240
StyI CCWWGG 1 cut(s) 294
TaaI ACNGT 1 cut(s) 142
TasI AATT 2 cut(s) 147, 240
Tru1I TTAA 1 cut(s) 322
Tru9I TTAA 1 cut(s) 322
TspDTI ATGAA 2 cut(s) 65, 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.