MD12G1163600.v1.1

synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0000979
Physical Location & Seq
Reverse (-)
24501983 .. 24504212
2230 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1163600.v1.1.491

Sequence Viewer

Length: 306 bp
ATGGATGACATAGTGGACCACAAGAGAGAACATTTTATCTCAGCTGTGAACTGTTACATGAAGAAATATGATGCCACAGAAGAAGAAGCGATAATCGAACTTAAAAGACAAGTGAATAATGCATGGAAGGACATAAACGAAGCATGCCTCCACCCTACCGCTGTCCCCATGCCCCTGCTAATTCGTATTCTCAATTTTGCTCGGGTCATGGATGTTGTGTACAAGTGTGAAGATGGCTACACTAATGCTAAGGGCGTGCTAAAAGATCTTATAGTTTCTACACTAGTGGAACCCGTAGCTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 map00909
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

102

Amino Acids

11.55

Weight (kDa)

5.27

Isoelectric Point (pI)

45.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth_C PF03936 1 - 44 1.1e-09 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 1 - 44 2e-07 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 159
AfaI GTAC 1 cut(s) 221
AhlI ACTAGT 1 cut(s) 283
AluBI AGCT 2 cut(s) 44, 299
AluI AGCT 2 cut(s) 44, 299
Ama87I CYCGRG 1 cut(s) 201
AspS9I GGNCC 1 cut(s) 16
AvaI CYCGRG 1 cut(s) 201
AvaII GGWCC 1 cut(s) 16
BccI CCATC 1 cut(s) 227
BcuI ACTAGT 1 cut(s) 283
BfaI CTAG 1 cut(s) 284
BglII AGATCT 1 cut(s) 265
Bme18I GGWCC 1 cut(s) 16
BmeT110I CYCGRG 1 cut(s) 201
BmgT120I GGNCC 1 cut(s) 16
BmiI GGNNCC 1 cut(s) 291
BmsI GCATC 1 cut(s) 61
Bpu10I CCTNAGC 1 cut(s) 249
BseGI GGATG 2 cut(s) 10, 217
BseMII CTCAG 1 cut(s) 54
BsiHKCI CYCGRG 1 cut(s) 201
BslFI GGGAC 1 cut(s) 149
BsmFI GGGAC 1 cut(s) 149
BsoBI CYCGRG 1 cut(s) 201
Bsp1407I TGTACA 1 cut(s) 219
Bsp143I GATC 1 cut(s) 265
BspACI CCGC 1 cut(s) 159
BspCNI CTCAG 1 cut(s) 53
BspLI GGNNCC 1 cut(s) 291
BsrGI TGTACA 1 cut(s) 219
BssMI GATC 1 cut(s) 265
Bst4CI ACNGT 1 cut(s) 53
BstAUI TGTACA 1 cut(s) 219
BstC8I GCNNGC 2 cut(s) 145, 257
BstDEI CTNAG 2 cut(s) 40, 249
BstF5I GGATG 2 cut(s) 10, 217
BstKTI GATC 1 cut(s) 268
BstMBI GATC 1 cut(s) 265
BstNSI RCATGY 1 cut(s) 147
BstX2I RGATCY 1 cut(s) 265
BstYI RGATCY 1 cut(s) 265
BtsCI GGATG 2 cut(s) 10, 217
Cac8I GCNNGC 2 cut(s) 145, 257
Cfr13I GGNCC 1 cut(s) 16
Csp6I GTAC 1 cut(s) 220
CviAII CATG 5 cut(s) 58, 123, 144, 169, 208
CviJI RGCY 3 cut(s) 44, 237, 299
CviKI_1 RGCY 3 cut(s) 44, 237, 299
CviQI GTAC 1 cut(s) 220
DdeI CTNAG 2 cut(s) 40, 249
DpnI GATC 1 cut(s) 267
DpnII GATC 1 cut(s) 265
Eco47I GGWCC 1 cut(s) 16
Eco88I CYCGRG 1 cut(s) 201
EcoT22I ATGCAT 1 cut(s) 124
FaeI CATG 5 cut(s) 61, 126, 147, 172, 211
FaqI GGGAC 1 cut(s) 149
FatI CATG 5 cut(s) 57, 122, 143, 168, 207
FokI GGATG 2 cut(s) 17, 224
FspBI CTAG 1 cut(s) 284
Hin1II CATG 5 cut(s) 61, 126, 147, 172, 211
Hpy166II GTNNAC 3 cut(s) 16, 49, 220
Hpy8I GTNNAC 3 cut(s) 16, 49, 220
HpyAV CCTTC 1 cut(s) 121
HpyCH4III ACNGT 1 cut(s) 53
HpyCH4V TGCA 1 cut(s) 122
HpyF3I CTNAG 2 cut(s) 40, 249
Hsp92II CATG 5 cut(s) 61, 126, 147, 172, 211
Kzo9I GATC 1 cut(s) 265
LpnPI CCDG 1 cut(s) 188
LweI GCATC 1 cut(s) 61
MaeI CTAG 1 cut(s) 284
MaeIII GTNAC 1 cut(s) 53
MalI GATC 1 cut(s) 267
MboI GATC 1 cut(s) 265
MboII GAAGA 4 cut(s) 73, 92, 95, 242
MflI RGATCY 1 cut(s) 265
MluCI AATT 2 cut(s) 180, 193
MnlI CCTC 1 cut(s) 158
Mph1103I ATGCAT 1 cut(s) 124
MseI TTAA 1 cut(s) 102
MspA1I CMGCKG 2 cut(s) 44, 161
NdeII GATC 1 cut(s) 265
NlaIII CATG 5 cut(s) 61, 126, 147, 172, 211
NlaIV GGNNCC 1 cut(s) 291
NsiI ATGCAT 1 cut(s) 124
NspI RCATGY 1 cut(s) 147
PaeI GCATGC 1 cut(s) 147
PspN4I GGNNCC 1 cut(s) 291
PspPI GGNCC 1 cut(s) 16
PsuI RGATCY 1 cut(s) 265
PvuII CAGCTG 1 cut(s) 44
RsaI GTAC 1 cut(s) 221
RsaNI GTAC 1 cut(s) 220
SaqAI TTAA 1 cut(s) 102
Sau3AI GATC 1 cut(s) 265
Sau96I GGNCC 1 cut(s) 16
SetI ASST 2 cut(s) 46, 301
SfaNI GCATC 1 cut(s) 61
SinI GGWCC 1 cut(s) 16
SpeI ACTAGT 1 cut(s) 283
SphI GCATGC 1 cut(s) 147
Sse9I AATT 2 cut(s) 180, 193
SsiI CCGC 1 cut(s) 159
SspMI CTAG 1 cut(s) 284
TaaI ACNGT 1 cut(s) 53
TaqI TCGA 1 cut(s) 96
TasI AATT 2 cut(s) 180, 193
TatI WGTACW 1 cut(s) 219
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TspDTI ATGAA 1 cut(s) 74
VpaK11BI GGWCC 1 cut(s) 16
XceI RCATGY 1 cut(s) 147
XspI CTAG 1 cut(s) 284
Zsp2I ATGCAT 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.