Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000979

Physical Location & Seq

Genomic Coordinates Forward (+)

64531840 .. 64532396

Gene Structure 557 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00128770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGATGATTGTATGCGTGTTGCGGCATCTTCTATCGGTAACACCATGCTTTCAGTGGTATCTCTAGTAGGCATGGGAGACATTATAACAAAAGAGACATTTGAGTGGTTGACCAATGATCCGAAAATTCTTAGAGCTTCGAATACCATATTTAGGCTTATGGATGCCATTGCTGGGCACAAGAGGGGGCATGTTGCTTCTAGTATTGATTGCTACATGAATGAATATGGGGTCTCAGAGCAAGAGACAATTGATGTCTTTAACAAACGAATTGTGGATTCGTGGAAGGATATAAACGAAGAGTTTCTGAGGCCCACTGCGGTGCCAATTCTTGTGCTTAATCGTGTTCTTAACCTAACTCGAGTGGTTGATCTCATTTACAAAAGGGGAGATGCCTTCACGCATGTTGGAAAACTGATGAAAGACACTATTGCTTCACTGTTTATTGATCCAGTGCCACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00909 map00909

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

154

Amino Acids

17.29

Weight (kDa)

5.57

Isoelectric Point (pI)

33.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Terpene_synth_C	PF03936	1 - 97	3.2e-28	Terpene synthase family, metal binding domain
Terpene_syn_C_2	PF19086	1 - 97	8.7e-21	Terpene synthase family 2, C-terminal metal binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000979)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22161 FvH4_3g32081 FvH4_3g32180 FvH4_5g06450 FvH4_6g19300
malus_domestica	MD12G1162800.v1.1 MD12G1163200.v1.1 MD12G1163600.v1.1
prunus_persica	Prupe.4G194000_v2.0.a1 Prupe.4G194700_v2.0.a1 Prupe.4G198800_v2.0.a1
pyrus_communis	pycom07g03220
rosa_chinensis	RchiOBHm_Chr0c17g0499941 RchiOBHm_Chr1g0326031 RchiOBHm_Chr1g0326301 RchiOBHm_Chr4g0406361 RchiOBHm_Chr6g0274881
rosa_laevigata	RLG00000008723 RLG00000014166 RLG00000033702
rosa_multiflora	Rmu_sc0000149.1_g000030 Rmu_sc0001353.1_g000008 Rmu_sc0006272.1_g000013 Rmu_sc0008056.1_g000001 Rmu_sc0011910.1_g000003 Rmu_sc0019563.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044360 Rroxscaffold_2G00123050 Rroxscaffold_2G00127900 Rroxscaffold_2G00128770 Rroxscaffold_3G00225480 Rroxscaffold_3G00235290 Rroxscaffold_4G00317180 Rroxscaffold_4G00320650 Rroxscaffold_4G00320660 Rroxscaffold_6G00393300
rosa_samantha	Rh1BG062100 Rh1CG074300 Rh1DG080600 Rh1DG081600 Rh3BG331000 Rh3CG216000 Rh3CG216300 Rh3CG216700 Rh3DG216700 Rh3DG328000 Rh3DG328300 Rh4CG145600 Rh5CG282500 Rh5DG271000 Rh5DG275500 Rh5DG312500 Rh5DG416000 Rh5DG454000 Rh6BG141200 Rh6BG178000 Rh6BG178100 Rh6BG178200 Rh6CG137600 Rh6CG174100 Rh6CG205100 Rh6CG272400 Rh6DG195900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	86
AccB1I	GGYRCC	1 cut(s)	322
AciI	CCGC	2 cut(s)	23, 320
AclWI	GGATC	2 cut(s)	113, 443
AcsI	RAATTY	1 cut(s)	126
AfiI	CCNNNNNNNGG	2 cut(s)	153, 174
AleI	CACNNNNGTG	1 cut(s)	320
AluBI	AGCT	1 cut(s)	137
AluI	AGCT	1 cut(s)	137
Alw26I	GTCTC	4 cut(s)	72, 89, 238, 239
AlwI	GGATC	2 cut(s)	113, 443
Ama87I	CYCGRG	1 cut(s)	360
AoxI	GGCC	1 cut(s)	311
ApoI	RAATTY	1 cut(s)	126
Asp700I	GAANNNNTTC	1 cut(s)	303
AspS9I	GGNCC	1 cut(s)	312
AsuII	TTCGAA	1 cut(s)	140
AvaI	CYCGRG	1 cut(s)	360
BaeGI	GKGCMC	1 cut(s)	180
BanI	GGYRCC	1 cut(s)	322
BcoDI	GTCTC	4 cut(s)	72, 89, 238, 239
BfaI	CTAG	2 cut(s)	65, 201
BisI	GCNGC	1 cut(s)	24
BlsI	GCNGC	1 cut(s)	25
BmeT110I	CYCGRG	1 cut(s)	360
BmgT120I	GGNCC	1 cut(s)	312
BmiI	GGNNCC	1 cut(s)	324
BmsI	GCATC	3 cut(s)	35, 154, 382
Bpu14I	TTCGAA	1 cut(s)	140
BsaI	GGTCTC	1 cut(s)	238
Bsc4I	CCNNNNNNNGG	2 cut(s)	153, 174
Bse1I	ACTGG	1 cut(s)	452
Bse3DI	GCAATG	1 cut(s)	168
BseGI	GGATG	2 cut(s)	10, 169
BseLI	CCNNNNNNNGG	2 cut(s)	153, 174
BseMI	GCAATG	1 cut(s)	168
BseMII	CTCAG	2 cut(s)	249, 299
BseNI	ACTGG	1 cut(s)	452
BseSI	GKGCMC	1 cut(s)	180
BseYI	CCCAGC	1 cut(s)	173
BshFI	GGCC	1 cut(s)	313
BshNI	GGYRCC	1 cut(s)	322
BsiHKCI	CYCGRG	1 cut(s)	360
BslI	CCNNNNNNNGG	2 cut(s)	153, 174
BsmAI	GTCTC	4 cut(s)	72, 89, 238, 239
BsnI	GGCC	1 cut(s)	313
Bso31I	GGTCTC	1 cut(s)	238
BsoBI	CYCGRG	1 cut(s)	360
Bsp119I	TTCGAA	1 cut(s)	140
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp143I	GATC	3 cut(s)	118, 370, 448
BspACI	CCGC	2 cut(s)	23, 320
BspANI	GGCC	1 cut(s)	313
BspCNI	CTCAG	2 cut(s)	248, 300
BspLI	GGNNCC	1 cut(s)	324
BspPI	GGATC	2 cut(s)	113, 443
BspT104I	TTCGAA	1 cut(s)	140
BspT107I	GGYRCC	1 cut(s)	322
BspTNI	GGTCTC	1 cut(s)	238
BsrDI	GCAATG	1 cut(s)	168
BsrI	ACTGG	1 cut(s)	452
BssMI	GATC	3 cut(s)	118, 370, 448
Bst4CI	ACNGT	1 cut(s)	441
Bst6I	CTCTTC	1 cut(s)	294
BstBI	TTCGAA	1 cut(s)	140
BstDEI	CTNAG	3 cut(s)	131, 235, 308
BstF5I	GGATG	2 cut(s)	10, 169
BstKTI	GATC	3 cut(s)	121, 373, 451
BstMAI	GTCTC	4 cut(s)	72, 89, 238, 239
BstMBI	GATC	3 cut(s)	118, 370, 448
BstNSI	RCATGY	2 cut(s)	194, 407
BstSLI	GKGCMC	1 cut(s)	180
BsuRI	GGCC	1 cut(s)	313
BtsCI	GGATG	2 cut(s)	10, 169
BtsI	GCAGTG	1 cut(s)	315
BtsIMutI	CAGTG	4 cut(s)	60, 315, 437, 459
Cfr13I	GGNCC	1 cut(s)	312
CviAII	CATG	5 cut(s)	46, 73, 191, 217, 404
CviJI	RGCY	3 cut(s)	137, 157, 313
CviKI_1	RGCY	3 cut(s)	137, 157, 313
DdeI	CTNAG	3 cut(s)	131, 235, 308
DpnI	GATC	3 cut(s)	120, 372, 450
DpnII	GATC	3 cut(s)	118, 370, 448
Eam1104I	CTCTTC	1 cut(s)	294
EarI	CTCTTC	1 cut(s)	294
Eco31I	GGTCTC	1 cut(s)	238
Eco88I	CYCGRG	1 cut(s)	360
FaeI	CATG	5 cut(s)	49, 76, 194, 220, 407
FatI	CATG	5 cut(s)	45, 72, 190, 216, 403
Fnu4HI	GCNGC	1 cut(s)	24
FokI	GGATG	2 cut(s)	17, 176
Fsp4HI	GCNGC	1 cut(s)	24
FspBI	CTAG	2 cut(s)	65, 201
GluI	GCNGC	1 cut(s)	24
GsaI	CCCAGC	1 cut(s)	177
HaeIII	GGCC	1 cut(s)	313
Hin1II	CATG	5 cut(s)	49, 76, 194, 220, 407
HincII	GTYRAC	1 cut(s)	111
HindII	GTYRAC	1 cut(s)	111
HinfI	GANTC	1 cut(s)	278
Hpy166II	GTNNAC	1 cut(s)	111
Hpy188I	TCNGA	4 cut(s)	123, 238, 309, 464
Hpy8I	GTNNAC	1 cut(s)	111
HpyAV	CCTTC	2 cut(s)	280, 406
HpyCH4III	ACNGT	1 cut(s)	441
HpyF3I	CTNAG	3 cut(s)	131, 235, 308
Hsp92II	CATG	5 cut(s)	49, 76, 194, 220, 407
Kzo9I	GATC	3 cut(s)	118, 370, 448
LpnPI	CCDG	1 cut(s)	159
LweI	GCATC	3 cut(s)	35, 154, 382
MaeI	CTAG	2 cut(s)	65, 201
MaeIII	GTNAC	1 cut(s)	38
MalI	GATC	3 cut(s)	120, 372, 450
MboI	GATC	3 cut(s)	118, 370, 448
MboII	GAAGA	2 cut(s)	21, 311
MfeI	CAATTG	1 cut(s)	249
MhlI	GDGCHC	1 cut(s)	180
MluCI	AATT	4 cut(s)	126, 249, 270, 327
MmeI	TCCRAC	1 cut(s)	388
MnlI	CCTC	2 cut(s)	177, 303
MroXI	GAANNNNTTC	1 cut(s)	303
MseI	TTAA	3 cut(s)	261, 339, 351
MslI	CAYNNNNRTG	2 cut(s)	103, 320
MunI	CAATTG	1 cut(s)	249
NdeII	GATC	3 cut(s)	118, 370, 448
NlaIII	CATG	5 cut(s)	49, 76, 194, 220, 407
NlaIV	GGNNCC	1 cut(s)	324
NspI	RCATGY	2 cut(s)	194, 407
NspV	TTCGAA	1 cut(s)	140
OliI	CACNNNNGTG	1 cut(s)	320
PaeR7I	CTCGAG	1 cut(s)	360
PdmI	GAANNNNTTC	1 cut(s)	303
PfeI	GAWTC	1 cut(s)	278
PkrI	GCNGC	1 cut(s)	25
PsiI	TTATAA	1 cut(s)	86
PspFI	CCCAGC	1 cut(s)	173
PspN4I	GGNNCC	1 cut(s)	324
PspPI	GGNCC	1 cut(s)	312
PspXI	VCTCGAGB	1 cut(s)	360
RseI	CAYNNNNRTG	2 cut(s)	103, 320
SaqAI	TTAA	3 cut(s)	261, 339, 351
SatI	GCNGC	1 cut(s)	24
Sau3AI	GATC	3 cut(s)	118, 370, 448
Sau96I	GGNCC	1 cut(s)	312
SduI	GDGCHC	1 cut(s)	180
SetI	ASST	2 cut(s)	139, 357
SfaNI	GCATC	3 cut(s)	35, 154, 382
Sfr274I	CTCGAG	1 cut(s)	360
SfuI	TTCGAA	1 cut(s)	140
SlaI	CTCGAG	1 cut(s)	360
SmiMI	CAYNNNNRTG	2 cut(s)	103, 320
SmlI	CTYRAG	1 cut(s)	360
SmoI	CTYRAG	1 cut(s)	360
Sse9I	AATT	4 cut(s)	126, 249, 270, 327
SsiI	CCGC	2 cut(s)	23, 320
SspMI	CTAG	2 cut(s)	65, 201
TaaI	ACNGT	1 cut(s)	441
TaqI	TCGA	2 cut(s)	140, 361
TasI	AATT	4 cut(s)	126, 249, 270, 327
TauI	GCSGC	1 cut(s)	26
TfiI	GAWTC	1 cut(s)	278
Tru1I	TTAA	3 cut(s)	261, 339, 351
Tru9I	TTAA	3 cut(s)	261, 339, 351
TscAI	CASTG	4 cut(s)	60, 322, 444, 459
TspDTI	ATGAA	3 cut(s)	233, 237, 434
TspRI	CASTG	4 cut(s)	60, 322, 444, 459
XapI	RAATTY	1 cut(s)	126
XceI	RCATGY	2 cut(s)	194, 407
XcmI	CCANNNNNNNNNTGG	1 cut(s)	52
XhoI	CTCGAG	1 cut(s)	360
XmnI	GAANNNNTTC	1 cut(s)	303
XspI	CTAG	2 cut(s)	65, 201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.