Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0000979

Physical Location & Seq

Genomic Coordinates Forward (+)

11836855 .. 11837494

Gene Structure 640 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G194700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGCAGTGGAAAGCTACAGCCCGCGCTTTCTTTGATGAGGCCAGATGGTTACACGAAGGATGCATCCCATCCATGGAGGAGTATATGCATGTTGCAACAACTTCTGTTGGTAACACCTTACTTTCAACTATATCTTTACTTGGCATGGGAGATGTTGTAACGAAAGAGGCATTTGAGTGGTTGTTTAGTAACCCTAAAATTCTCAGAGCTTCGAATATCATTTTTAGGCTTATGAATGACACTGCCGGCTGCAAGTCTGAGAAAGAAAGAGGGCTTGAGGCTTCGAGTGTTGATTGCTACATGAAGCAACATGGAGTCTCAGAGCAAGAGACACTTGATGTTTTCAACAAACAAGTTATGGATTTGTGGAAGGATATAAACGAGGAGCTCCTTATAAAGCCAACTGTTGTGCCAAGGCCTGTCCTCATGCGCGTTCTCAATTTAATAAGAGTTATGTATCTGGTTTACAAAAGGGGAGATGGCTTCACACATGTTGGAAAACTTATGAAAGATATTGTCACTTCACTTTTTCTTGATCCTGTTCCACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00909 map00909

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

184

Amino Acids

20.89

Weight (kDa)

6.1

Isoelectric Point (pI)

39.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000979)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22161 FvH4_3g32081 FvH4_3g32180 FvH4_5g06450 FvH4_6g19300
malus_domestica	MD12G1162800.v1.1 MD12G1163200.v1.1 MD12G1163600.v1.1
prunus_persica	Prupe.4G194000_v2.0.a1 Prupe.4G194700_v2.0.a1 Prupe.4G198800_v2.0.a1
pyrus_communis	pycom07g03220
rosa_chinensis	RchiOBHm_Chr0c17g0499941 RchiOBHm_Chr1g0326031 RchiOBHm_Chr1g0326301 RchiOBHm_Chr4g0406361 RchiOBHm_Chr6g0274881
rosa_laevigata	RLG00000008723 RLG00000014166 RLG00000033702
rosa_multiflora	Rmu_sc0000149.1_g000030 Rmu_sc0001353.1_g000008 Rmu_sc0006272.1_g000013 Rmu_sc0008056.1_g000001 Rmu_sc0011910.1_g000003 Rmu_sc0019563.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044360 Rroxscaffold_2G00123050 Rroxscaffold_2G00127900 Rroxscaffold_2G00128770 Rroxscaffold_3G00225480 Rroxscaffold_3G00235290 Rroxscaffold_4G00317180 Rroxscaffold_4G00320650 Rroxscaffold_4G00320660 Rroxscaffold_6G00393300
rosa_samantha	Rh1BG062100 Rh1CG074300 Rh1DG080600 Rh1DG081600 Rh3BG331000 Rh3CG216000 Rh3CG216300 Rh3CG216700 Rh3DG216700 Rh3DG328000 Rh3DG328300 Rh4CG145600 Rh5CG282500 Rh5DG271000 Rh5DG275500 Rh5DG312500 Rh5DG416000 Rh5DG454000 Rh6BG141200 Rh6BG178000 Rh6BG178100 Rh6BG178200 Rh6CG137600 Rh6CG174100 Rh6CG205100 Rh6CG272400 Rh6DG195900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	395
AccII	CGCG	2 cut(s)	24, 432
AciI	CCGC	1 cut(s)	22
AclWI	GGATC	1 cut(s)	530
AcsI	RAATTY	1 cut(s)	198
AfiI	CCNNNNNNNGG	1 cut(s)	73
AflIII	ACRYGT	1 cut(s)	490
AgsI	TTSAA	2 cut(s)	126, 346
AluBI	AGCT	3 cut(s)	14, 209, 388
AluI	AGCT	3 cut(s)	14, 209, 388
Alw21I	GWGCWC	1 cut(s)	390
Alw26I	GTCTC	2 cut(s)	322, 323
AlwI	GGATC	1 cut(s)	530
AoxI	GGCC	2 cut(s)	39, 416
ApeKI	GCWGC	1 cut(s)	249
ApoI	RAATTY	1 cut(s)	198
AspLEI	GCGC	2 cut(s)	26, 432
AsuII	TTCGAA	1 cut(s)	212
BanII	GRGCYC	1 cut(s)	390
Bbv12I	GWGCWC	1 cut(s)	390
BbvI	GCAGC	1 cut(s)	236
BccI	CCATC	3 cut(s)	39, 76, 473
BcoDI	GTCTC	2 cut(s)	322, 323
BfmI	CTRYAG	1 cut(s)	15
BisI	GCNGC	1 cut(s)	250
BlsI	GCNGC	1 cut(s)	251
BmsI	GCATC	2 cut(s)	50, 72
Bpu14I	TTCGAA	1 cut(s)	212
BpuEI	CTTGAG	1 cut(s)	296
BsaJI	CCNNGG	2 cut(s)	72, 413
BsaXI	ACNNNNNCTCC	2 cut(s)	141, 171
Bsc4I	CCNNNNNNNGG	1 cut(s)	73
Bse118I	RCCGGY	1 cut(s)	245
BseDI	CCNNGG	2 cut(s)	72, 413
BseGI	GGATG	3 cut(s)	63, 65, 68
BseLI	CCNNNNNNNGG	1 cut(s)	73
BseMII	CTCAG	3 cut(s)	217, 249, 333
BseRI	GAGGAG	2 cut(s)	92, 398
BseXI	GCAGC	1 cut(s)	236
Bsh1236I	CGCG	2 cut(s)	24, 432
BshFI	GGCC	2 cut(s)	41, 418
BsiHKAI	GWGCWC	1 cut(s)	390
BsiSI	CCGG	1 cut(s)	246
BslI	CCNNNNNNNGG	1 cut(s)	73
BsmAI	GTCTC	2 cut(s)	322, 323
BsnI	GGCC	2 cut(s)	41, 418
Bsp119I	TTCGAA	1 cut(s)	212
Bsp1286I	GDGCHC	1 cut(s)	390
Bsp143I	GATC	1 cut(s)	535
Bsp19I	CCATGG	1 cut(s)	72
BspACI	CCGC	1 cut(s)	22
BspANI	GGCC	2 cut(s)	41, 418
BspCNI	CTCAG	3 cut(s)	216, 250, 332
BspFNI	CGCG	2 cut(s)	24, 432
BspPI	GGATC	1 cut(s)	530
BspT104I	TTCGAA	1 cut(s)	212
BsrFI	RCCGGY	1 cut(s)	245
BssAI	RCCGGY	1 cut(s)	245
BssECI	CCNNGG	2 cut(s)	72, 413
BssMI	GATC	1 cut(s)	535
BssT1I	CCWWGG	2 cut(s)	72, 413
Bst4CI	ACNGT	1 cut(s)	406
BstBI	TTCGAA	1 cut(s)	212
BstC8I	GCNNGC	2 cut(s)	22, 247
BstDEI	CTNAG	3 cut(s)	203, 258, 319
BstDSI	CCRYGG	1 cut(s)	72
BstF5I	GGATG	3 cut(s)	63, 65, 68
BstFNI	CGCG	2 cut(s)	24, 432
BstHHI	GCGC	2 cut(s)	26, 432
BstKTI	GATC	1 cut(s)	538
BstMAI	GTCTC	2 cut(s)	322, 323
BstMBI	GATC	1 cut(s)	535
BstNSI	RCATGY	2 cut(s)	92, 494
BstSFI	CTRYAG	1 cut(s)	15
BstUI	CGCG	2 cut(s)	24, 432
BstV1I	GCAGC	1 cut(s)	236
BsuRI	GGCC	2 cut(s)	41, 418
BtgI	CCRYGG	1 cut(s)	72
BtsCI	GGATG	3 cut(s)	63, 65, 68
BtsI	GCAGTG	2 cut(s)	11, 240
BtsIMutI	CAGTG	2 cut(s)	11, 240
Cac8I	GCNNGC	2 cut(s)	22, 247
CfoI	GCGC	2 cut(s)	26, 432
Cfr10I	RCCGGY	1 cut(s)	245
CviAII	CATG	7 cut(s)	73, 89, 145, 301, 311, 427, 491
DdeI	CTNAG	3 cut(s)	203, 258, 319
DpnI	GATC	1 cut(s)	537
DpnII	GATC	1 cut(s)	535
Ecl136II	GAGCTC	1 cut(s)	388
Eco130I	CCWWGG	2 cut(s)	72, 413
Eco147I	AGGCCT	1 cut(s)	418
Eco24I	GRGCYC	1 cut(s)	390
Eco53kI	GAGCTC	1 cut(s)	388
EcoICRI	GAGCTC	1 cut(s)	388
EcoT14I	CCWWGG	2 cut(s)	72, 413
EcoT22I	ATGCAT	2 cut(s)	65, 90
EcoT38I	GRGCYC	1 cut(s)	390
ErhI	CCWWGG	2 cut(s)	72, 413
FaeI	CATG	7 cut(s)	76, 92, 148, 304, 314, 430, 494
FalI	AAGNNNNNCTT	2 cut(s)	318, 350
FatI	CATG	7 cut(s)	72, 88, 144, 300, 310, 426, 490
FauI	CCCGC	1 cut(s)	29
Fnu4HI	GCNGC	1 cut(s)	250
FokI	GGATG	3 cut(s)	50, 55, 72
FriOI	GRGCYC	1 cut(s)	390
Fsp4HI	GCNGC	1 cut(s)	250
GlaI	GCGC	2 cut(s)	25, 431
GluI	GCNGC	1 cut(s)	250
HaeIII	GGCC	2 cut(s)	41, 418
HapII	CCGG	1 cut(s)	246
HhaI	GCGC	2 cut(s)	26, 432
Hin1II	CATG	7 cut(s)	76, 92, 148, 304, 314, 430, 494
Hin6I	GCGC	2 cut(s)	24, 430
HinP1I	GCGC	2 cut(s)	24, 430
HinfI	GANTC	1 cut(s)	315
HpaII	CCGG	1 cut(s)	246
Hpy166II	GTNNAC	1 cut(s)	466
Hpy188I	TCNGA	3 cut(s)	206, 259, 322
Hpy188III	TCNNGA	1 cut(s)	533
Hpy8I	GTNNAC	1 cut(s)	466
HpyAV	CCTTC	2 cut(s)	50, 364
HpyCH4III	ACNGT	1 cut(s)	406
HpyCH4V	TGCA	5 cut(s)	4, 63, 88, 95, 252
HpyF3I	CTNAG	3 cut(s)	203, 258, 319
Hsp92II	CATG	7 cut(s)	76, 92, 148, 304, 314, 430, 494
HspAI	GCGC	2 cut(s)	24, 430
KroI	GCCGGC	1 cut(s)	245
KroNI	GCCGGC	1 cut(s)	247
Kzo9I	GATC	1 cut(s)	535
LmnI	GCTCC	2 cut(s)	385, 393
LpnPI	CCDG	4 cut(s)	55, 259, 432, 446
Lsp1109I	GCAGC	1 cut(s)	236
LweI	GCATC	2 cut(s)	50, 72
MaeIII	GTNAC	5 cut(s)	48, 110, 157, 188, 517
MalI	GATC	1 cut(s)	537
MboI	GATC	1 cut(s)	535
MhlI	GDGCHC	1 cut(s)	390
MluCI	AATT	2 cut(s)	198, 439
MlyI	GAGTC	1 cut(s)	324
MmeI	TCCRAC	1 cut(s)	475
MnlI	CCTC	7 cut(s)	31, 70, 160, 263, 271, 376, 434
Mph1103I	ATGCAT	2 cut(s)	65, 90
MroNI	GCCGGC	1 cut(s)	245
MseI	TTAA	2 cut(s)	443, 550
MslI	CAYNNNNRTG	1 cut(s)	175
MspI	CCGG	1 cut(s)	246
MvnI	CGCG	2 cut(s)	24, 432
NaeI	GCCGGC	1 cut(s)	247
NcoI	CCATGG	1 cut(s)	72
NdeII	GATC	1 cut(s)	535
NgoMIV	GCCGGC	1 cut(s)	245
NlaIII	CATG	7 cut(s)	76, 92, 148, 304, 314, 430, 494
NmuCI	GTSAC	1 cut(s)	517
NsiI	ATGCAT	2 cut(s)	65, 90
NspI	RCATGY	2 cut(s)	92, 494
NspV	TTCGAA	1 cut(s)	212
PceI	AGGCCT	1 cut(s)	418
PciI	ACATGT	1 cut(s)	490
PdiI	GCCGGC	1 cut(s)	247
PkrI	GCNGC	1 cut(s)	251
PleI	GAGTC	1 cut(s)	323
PpsI	GAGTC	1 cut(s)	323
PscI	ACATGT	1 cut(s)	490
PsiI	TTATAA	1 cut(s)	395
Psp124BI	GAGCTC	1 cut(s)	390
RseI	CAYNNNNRTG	1 cut(s)	175
SacI	GAGCTC	1 cut(s)	390
SaqAI	TTAA	2 cut(s)	443, 550
SatI	GCNGC	1 cut(s)	250
Sau3AI	GATC	1 cut(s)	535
SchI	GAGTC	1 cut(s)	324
SduI	GDGCHC	1 cut(s)	390
SetI	ASST	4 cut(s)	16, 119, 211, 390
SfaNI	GCATC	2 cut(s)	50, 72
SfcI	CTRYAG	1 cut(s)	15
SfuI	TTCGAA	1 cut(s)	212
SmiMI	CAYNNNNRTG	1 cut(s)	175
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
Sse9I	AATT	2 cut(s)	198, 439
SseBI	AGGCCT	1 cut(s)	418
SsiI	CCGC	1 cut(s)	22
SstI	GAGCTC	1 cut(s)	390
StuI	AGGCCT	1 cut(s)	418
StyI	CCWWGG	2 cut(s)	72, 413
TaaI	ACNGT	1 cut(s)	406
TaqI	TCGA	2 cut(s)	212, 284
TasI	AATT	2 cut(s)	198, 439
Tru1I	TTAA	2 cut(s)	443, 550
Tru9I	TTAA	2 cut(s)	443, 550
TscAI	CASTG	1 cut(s)	247
TseFI	GTSAC	1 cut(s)	517
TseI	GCWGC	1 cut(s)	249
Tsp45I	GTSAC	1 cut(s)	517
TspDTI	ATGAA	3 cut(s)	248, 317, 521
TspRI	CASTG	1 cut(s)	247
XapI	RAATTY	1 cut(s)	198
XceI	RCATGY	2 cut(s)	92, 494
Zsp2I	ATGCAT	2 cut(s)	65, 90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.