MD12G1162800.v1.1

synthase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Reverse (-)
24419066 .. 24419360
295 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1162800.v1.1.491

Sequence Viewer

Length: 255 bp
ATGAAGAAATATGGTACCACAGAAGAAGAAGCGATAATTGAACTTCAAAGACAAGTTAATAATACATGGAAGGACGTAAACAAAGCGTGCCTCCAGCCTACAGCTGTCCCCATGCCCCAGCTAATTCGTATTCTCAATTTTGCTCGGGTCATGGAAGTTGTGTACAAGTGTGAAGATGGTTACGCTAATCCTGAGGGTGTGCTAAAAGATTTTATAGTTTCTACACTAGTGGAACCCGTGGCTCAATTAGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

85

Amino Acids

9.51

Weight (kDa)

5.02

Isoelectric Point (pI)

58.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 14
AccB1I GGYRCC 1 cut(s) 14
AfaI GTAC 2 cut(s) 16, 164
AgsI TTSAA 2 cut(s) 41, 47
AhlI ACTAGT 1 cut(s) 226
AluBI AGCT 2 cut(s) 104, 121
AluI AGCT 2 cut(s) 104, 121
Ama87I CYCGRG 1 cut(s) 144
Asp718I GGTACC 1 cut(s) 14
AvaI CYCGRG 1 cut(s) 144
AxyI CCTNAGG 1 cut(s) 192
BanI GGYRCC 1 cut(s) 14
BccI CCATC 1 cut(s) 170
BcuI ACTAGT 1 cut(s) 226
BfaI CTAG 1 cut(s) 227
BfmI CTRYAG 1 cut(s) 99
BmeT110I CYCGRG 1 cut(s) 144
BmiI GGNNCC 2 cut(s) 16, 234
BpmI CTGGAG 1 cut(s) 77
BsaJI CCNNGG 1 cut(s) 237
Bse21I CCTNAGG 1 cut(s) 192
BseDI CCNNGG 1 cut(s) 237
BseMII CTCAG 1 cut(s) 183
BseYI CCCAGC 1 cut(s) 117
BshNI GGYRCC 1 cut(s) 14
BsiHKCI CYCGRG 1 cut(s) 144
BslFI GGGAC 1 cut(s) 92
BsmFI GGGAC 1 cut(s) 92
BsoBI CYCGRG 1 cut(s) 144
Bsp1407I TGTACA 1 cut(s) 162
BspCNI CTCAG 1 cut(s) 184
BspLI GGNNCC 2 cut(s) 16, 234
BspT107I GGYRCC 1 cut(s) 14
BsrGI TGTACA 1 cut(s) 162
BssECI CCNNGG 1 cut(s) 237
BstAUI TGTACA 1 cut(s) 162
BstC8I GCNNGC 1 cut(s) 88
BstDEI CTNAG 1 cut(s) 192
BstDSI CCRYGG 1 cut(s) 237
BstMWI GCNNNNNNNGC 1 cut(s) 248
BstSFI CTRYAG 1 cut(s) 99
Bsu36I CCTNAGG 1 cut(s) 192
BtgI CCRYGG 1 cut(s) 237
Cac8I GCNNGC 1 cut(s) 88
Csp6I GTAC 2 cut(s) 15, 163
CviAII CATG 3 cut(s) 66, 112, 151
CviJI RGCY 5 cut(s) 97, 104, 121, 242, 251
CviKI_1 RGCY 5 cut(s) 97, 104, 121, 242, 251
CviQI GTAC 2 cut(s) 15, 163
DdeI CTNAG 1 cut(s) 192
Eco81I CCTNAGG 1 cut(s) 192
Eco88I CYCGRG 1 cut(s) 144
FaeI CATG 3 cut(s) 69, 115, 154
FaiI YATR 5 cut(s) 12, 67, 113, 152, 215
FaqI GGGAC 1 cut(s) 92
FatI CATG 3 cut(s) 65, 111, 150
FspBI CTAG 1 cut(s) 227
GsaI CCCAGC 1 cut(s) 121
GsuI CTGGAG 1 cut(s) 77
Hin1II CATG 3 cut(s) 69, 115, 154
Hpy166II GTNNAC 2 cut(s) 79, 163
Hpy188III TCNNGA 1 cut(s) 191
Hpy8I GTNNAC 2 cut(s) 79, 163
HpyAV CCTTC 1 cut(s) 64
HpyCH4IV ACGT 1 cut(s) 75
HpyF10VI GCNNNNNNNGC 1 cut(s) 248
HpyF3I CTNAG 1 cut(s) 192
HpySE526I ACGT 1 cut(s) 75
Hsp92II CATG 3 cut(s) 69, 115, 154
KpnI GGTACC 1 cut(s) 18
LpnPI CCDG 3 cut(s) 107, 131, 204
MaeI CTAG 1 cut(s) 227
MaeII ACGT 1 cut(s) 75
MaeIII GTNAC 1 cut(s) 179
MboII GAAGA 4 cut(s) 16, 35, 38, 185
MluCI AATT 4 cut(s) 36, 123, 136, 245
MnlI CCTC 2 cut(s) 101, 187
MseI TTAA 1 cut(s) 57
MspA1I CMGCKG 1 cut(s) 104
MwoI GCNNNNNNNGC 1 cut(s) 248
NlaIII CATG 3 cut(s) 69, 115, 154
NlaIV GGNNCC 2 cut(s) 16, 234
PspFI CCCAGC 1 cut(s) 117
PspN4I GGNNCC 2 cut(s) 16, 234
PvuII CAGCTG 1 cut(s) 104
RsaI GTAC 2 cut(s) 16, 164
RsaNI GTAC 2 cut(s) 15, 163
SaqAI TTAA 1 cut(s) 57
SetI ASST 3 cut(s) 78, 106, 123
SfcI CTRYAG 1 cut(s) 99
SpeI ACTAGT 1 cut(s) 226
Sse9I AATT 4 cut(s) 36, 123, 136, 245
SspMI CTAG 1 cut(s) 227
TaiI ACGT 1 cut(s) 78
TasI AATT 4 cut(s) 36, 123, 136, 245
TatI WGTACW 1 cut(s) 162
Tru1I TTAA 1 cut(s) 57
Tru9I TTAA 1 cut(s) 57
TspDTI ATGAA 1 cut(s) 17
XspI CTAG 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.