Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0000979

Physical Location & Seq

Genomic Coordinates Forward (+)

19873446 .. 19888469

Gene Structure 15024 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG216000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGTGCAAGCAACTAGAATTGAAACTTGGTTGCCCAAGAAAATTTGAATCTCCTCAACCGCTACTAAGACGGTGGGATGCTAGTTGCGTCGATCAACTGCCAGACTATATGCAACCATTTTATCTAACACTTCTGGATGTTGTCAATGAAGTTGGGGAGGAACTGATAAAGCAAGGAAGATCATACCGACTTTACTATGTGAAAGAAATTTTTGAGAAAGAGAGAGGGCATGTTGCTTCTAGTATCGATTGCTACATGAATGAATATGGGGTCTCAGAGCAAGAGACAATTGATGTCTTTAACGAACGAATTGTGGATTCGTGGAAGGATATAAACGAAGAGTTTCTGAGACCCACTGCTGCGCCAGTGCCTGTGCTTAATCGTGTTCTTAACCTAACTCGAGTGATTGATCTCCTTTACAAAAAGGGAGATGCCTTCACGCATGTTGGAAAACTGATGAAAGACACTATTGCTTCACTGTTTATTGATCCGGTGCCACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00909 map00909

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

167

Amino Acids

19.42

Weight (kDa)

5.14

Isoelectric Point (pI)

52.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Terpene_synth_C	PF03936	22 - 72	1.3e-10	Terpene synthase family, metal binding domain
Terpene_synth_C	PF03936	71 - 110	1.1e-09	Terpene synthase family, metal binding domain
Terpene_syn_C_2	PF19086	71 - 110	8.7e-10	Terpene synthase family 2, C-terminal metal binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000979)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22161 FvH4_3g32081 FvH4_3g32180 FvH4_5g06450 FvH4_6g19300
malus_domestica	MD12G1162800.v1.1 MD12G1163200.v1.1 MD12G1163600.v1.1
prunus_persica	Prupe.4G194000_v2.0.a1 Prupe.4G194700_v2.0.a1 Prupe.4G198800_v2.0.a1
pyrus_communis	pycom07g03220
rosa_chinensis	RchiOBHm_Chr0c17g0499941 RchiOBHm_Chr1g0326031 RchiOBHm_Chr1g0326301 RchiOBHm_Chr4g0406361 RchiOBHm_Chr6g0274881
rosa_laevigata	RLG00000008723 RLG00000014166 RLG00000033702
rosa_multiflora	Rmu_sc0000149.1_g000030 Rmu_sc0001353.1_g000008 Rmu_sc0006272.1_g000013 Rmu_sc0008056.1_g000001 Rmu_sc0011910.1_g000003 Rmu_sc0019563.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044360 Rroxscaffold_2G00123050 Rroxscaffold_2G00127900 Rroxscaffold_2G00128770 Rroxscaffold_3G00225480 Rroxscaffold_3G00235290 Rroxscaffold_4G00317180 Rroxscaffold_4G00320650 Rroxscaffold_4G00320660 Rroxscaffold_6G00393300
rosa_samantha	Rh1BG062100 Rh1CG074300 Rh1DG080600 Rh1DG081600 Rh3BG331000 Rh3CG216000 Rh3CG216300 Rh3CG216700 Rh3DG216700 Rh3DG328000 Rh3DG328300 Rh4CG145600 Rh5CG282500 Rh5DG271000 Rh5DG275500 Rh5DG312500 Rh5DG416000 Rh5DG454000 Rh6BG141200 Rh6BG178000 Rh6BG178100 Rh6BG178200 Rh6CG137600 Rh6CG174100 Rh6CG205100 Rh6CG272400 Rh6DG195900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	493
AciI	CCGC	1 cut(s)	59
AclWI	GGATC	1 cut(s)	482
AcsI	RAATTY	2 cut(s)	41, 207
AgsI	TTSAA	2 cut(s)	22, 47
AjuI	GAANNNNNNNTTGG	2 cut(s)	9, 41
Alw26I	GTCTC	3 cut(s)	277, 278, 343
AlwI	GGATC	1 cut(s)	482
AlwNI	CAGNNNCTG	1 cut(s)	371
Ama87I	CYCGRG	1 cut(s)	399
ApeKI	GCWGC	1 cut(s)	359
ApoI	RAATTY	2 cut(s)	41, 207
Asp700I	GAANNNNTTC	1 cut(s)	342
AspLEI	GCGC	1 cut(s)	364
AvaI	CYCGRG	1 cut(s)	399
BanI	GGYRCC	1 cut(s)	493
BbvI	GCAGC	1 cut(s)	346
BcoDI	GTCTC	3 cut(s)	277, 278, 343
BfaI	CTAG	3 cut(s)	14, 81, 240
BisI	GCNGC	1 cut(s)	360
BlsI	GCNGC	1 cut(s)	361
BmeT110I	CYCGRG	1 cut(s)	399
BmiI	GGNNCC	1 cut(s)	495
BmsI	GCATC	2 cut(s)	67, 421
Bsa29I	ATCGAT	1 cut(s)	246
BsaI	GGTCTC	2 cut(s)	277, 343
BsaWI	WCCGGW	1 cut(s)	490
Bse1I	ACTGG	1 cut(s)	365
BseCI	ATCGAT	1 cut(s)	246
BseGI	GGATG	2 cut(s)	82, 142
BseMII	CTCAG	2 cut(s)	288, 338
BseNI	ACTGG	1 cut(s)	365
BseRI	GAGGAG	1 cut(s)	42
BseXI	GCAGC	1 cut(s)	346
BshNI	GGYRCC	1 cut(s)	493
BshVI	ATCGAT	1 cut(s)	246
BsiHKCI	CYCGRG	1 cut(s)	399
BsiSI	CCGG	1 cut(s)	491
BsmAI	GTCTC	3 cut(s)	277, 278, 343
Bso31I	GGTCTC	2 cut(s)	277, 343
BsoBI	CYCGRG	1 cut(s)	399
Bsp143I	GATC	4 cut(s)	91, 179, 409, 487
BspACI	CCGC	1 cut(s)	59
BspCNI	CTCAG	2 cut(s)	287, 339
BspDI	ATCGAT	1 cut(s)	246
BspLI	GGNNCC	1 cut(s)	495
BspPI	GGATC	1 cut(s)	482
BspT107I	GGYRCC	1 cut(s)	493
BspTNI	GGTCTC	2 cut(s)	277, 343
BsrI	ACTGG	1 cut(s)	365
BssMI	GATC	4 cut(s)	91, 179, 409, 487
Bst4CI	ACNGT	2 cut(s)	72, 480
Bst6I	CTCTTC	1 cut(s)	333
BstC8I	GCNNGC	1 cut(s)	8
BstDEI	CTNAG	3 cut(s)	65, 274, 347
BstF5I	GGATG	2 cut(s)	82, 142
BstHHI	GCGC	1 cut(s)	364
BstKTI	GATC	4 cut(s)	94, 182, 412, 490
BstMAI	GTCTC	3 cut(s)	277, 278, 343
BstMBI	GATC	4 cut(s)	91, 179, 409, 487
BstNSI	RCATGY	2 cut(s)	233, 446
BstV1I	GCAGC	1 cut(s)	346
Bsu15I	ATCGAT	1 cut(s)	246
BsuTUI	ATCGAT	1 cut(s)	246
BtsCI	GGATG	2 cut(s)	82, 142
BtsI	GCAGTG	1 cut(s)	354
BtsIMutI	CAGTG	3 cut(s)	354, 372, 476
Cac8I	GCNNGC	1 cut(s)	8
CaiI	CAGNNNCTG	1 cut(s)	371
CfoI	GCGC	1 cut(s)	364
ClaI	ATCGAT	1 cut(s)	246
CseI	GACGC	1 cut(s)	76
CviAII	CATG	3 cut(s)	230, 256, 443
DdeI	CTNAG	3 cut(s)	65, 274, 347
DpnI	GATC	4 cut(s)	93, 181, 411, 489
DpnII	GATC	4 cut(s)	91, 179, 409, 487
Eam1104I	CTCTTC	1 cut(s)	333
EarI	CTCTTC	1 cut(s)	333
Eco31I	GGTCTC	2 cut(s)	277, 343
Eco88I	CYCGRG	1 cut(s)	399
FaeI	CATG	3 cut(s)	233, 259, 446
FaiI	YATR	9 cut(s)	108, 110, 184, 198, 231, 257, 267, 332, 444
FatI	CATG	3 cut(s)	229, 255, 442
Fnu4HI	GCNGC	1 cut(s)	360
FokI	GGATG	2 cut(s)	89, 149
Fsp4HI	GCNGC	1 cut(s)	360
FspBI	CTAG	3 cut(s)	14, 81, 240
GlaI	GCGC	1 cut(s)	363
GluI	GCNGC	1 cut(s)	360
HapII	CCGG	1 cut(s)	491
HgaI	GACGC	1 cut(s)	76
HhaI	GCGC	1 cut(s)	364
Hin1II	CATG	3 cut(s)	233, 259, 446
Hin6I	GCGC	1 cut(s)	362
HinP1I	GCGC	1 cut(s)	362
HinfI	GANTC	2 cut(s)	47, 317
HpaII	CCGG	1 cut(s)	491
Hpy188I	TCNGA	3 cut(s)	277, 348, 503
Hpy188III	TCNNGA	1 cut(s)	134
Hpy99I	CGWCG	1 cut(s)	92
HpyAV	CCTTC	2 cut(s)	319, 445
HpyCH4III	ACNGT	2 cut(s)	72, 480
HpyCH4V	TGCA	2 cut(s)	6, 112
HpyF3I	CTNAG	3 cut(s)	65, 274, 347
Hsp92II	CATG	3 cut(s)	233, 259, 446
HspAI	GCGC	1 cut(s)	362
Kzo9I	GATC	4 cut(s)	91, 179, 409, 487
LpnPI	CCDG	4 cut(s)	114, 119, 378, 384
Lsp1109I	GCAGC	1 cut(s)	346
LweI	GCATC	2 cut(s)	67, 421
MaeI	CTAG	3 cut(s)	14, 81, 240
MalI	GATC	4 cut(s)	93, 181, 411, 489
MboI	GATC	4 cut(s)	91, 179, 409, 487
MboII	GAAGA	2 cut(s)	189, 350
MfeI	CAATTG	1 cut(s)	288
MluCI	AATT	5 cut(s)	17, 41, 207, 288, 309
MmeI	TCCRAC	1 cut(s)	427
MnlI	CCTC	3 cut(s)	63, 151, 218
MroXI	GAANNNNTTC	1 cut(s)	342
MseI	TTAA	3 cut(s)	300, 378, 390
MspI	CCGG	1 cut(s)	491
MunI	CAATTG	1 cut(s)	288
NdeII	GATC	4 cut(s)	91, 179, 409, 487
NlaIII	CATG	3 cut(s)	233, 259, 446
NlaIV	GGNNCC	1 cut(s)	495
NspI	RCATGY	2 cut(s)	233, 446
PaeR7I	CTCGAG	1 cut(s)	399
PdmI	GAANNNNTTC	1 cut(s)	342
PfeI	GAWTC	2 cut(s)	47, 317
PkrI	GCNGC	1 cut(s)	361
PspN4I	GGNNCC	1 cut(s)	495
PspXI	VCTCGAGB	1 cut(s)	399
PstNI	CAGNNNCTG	1 cut(s)	371
SaqAI	TTAA	3 cut(s)	300, 378, 390
SatI	GCNGC	1 cut(s)	360
Sau3AI	GATC	4 cut(s)	91, 179, 409, 487
SetI	ASST	1 cut(s)	396
SfaNI	GCATC	2 cut(s)	67, 421
Sfr274I	CTCGAG	1 cut(s)	399
SlaI	CTCGAG	1 cut(s)	399
SmlI	CTYRAG	1 cut(s)	399
SmoI	CTYRAG	1 cut(s)	399
Sse9I	AATT	5 cut(s)	17, 41, 207, 288, 309
SsiI	CCGC	1 cut(s)	59
SspMI	CTAG	3 cut(s)	14, 81, 240
TaaI	ACNGT	2 cut(s)	72, 480
TaqI	TCGA	3 cut(s)	90, 246, 400
TasI	AATT	5 cut(s)	17, 41, 207, 288, 309
TfiI	GAWTC	2 cut(s)	47, 317
Tru1I	TTAA	3 cut(s)	300, 378, 390
Tru9I	TTAA	3 cut(s)	300, 378, 390
TscAI	CASTG	3 cut(s)	361, 372, 483
TseI	GCWGC	1 cut(s)	359
TspDTI	ATGAA	4 cut(s)	162, 272, 276, 473
TspRI	CASTG	3 cut(s)	361, 372, 483
XapI	RAATTY	2 cut(s)	41, 207
XceI	RCATGY	2 cut(s)	233, 446
XhoI	CTCGAG	1 cut(s)	399
XmnI	GAANNNNTTC	1 cut(s)	342
XspI	CTAG	3 cut(s)	14, 81, 240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.