Rh6CG137600

(-)-alpha-pinene synthase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000979
Physical Location & Seq
Forward (+)
17551174 .. 17553733
2560 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG137600.1

Sequence Viewer

Length: 429 bp
ATGTCGTCTATGCCAACTAGTTCTGTATCATTTCCGGTACCACAAATTGCAAAGCCTGAAATCATTCGCCGGACAGCAAATTTTCAACCAAGCATTTTGGGAGATCAGTTCATCAACTATGATTCCCAAAAAACTTTTGAGAAAGAGAGAGGGCATACACCTTCTAGCATTGATTGCTATATGAAGCAATATGGTGTTTCAGAGCAAGAGACGATTGAAGTTTTCGAGAAACAAATTGCAAAATCATGGAAGGATATAAATGAGGAGTTTCTTAAACCAACAGCTGTGCCAATGCCGGTTCTTATGCGTGTTCTCAATTTAATGAGAGTAGTGGATCTTCTTTACAAGGGAGAAGATGGATTCACACGGGTTGGGAAGATGACCAAAGATAGTGTTGCTGCAGTTATTATCGACTCAGTGCCACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 map00909
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

142

Amino Acids

16.08

Weight (kDa)

5.86

Isoelectric Point (pI)

61.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth_C PF03936 45 - 85 1.8e-10 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 46 - 85 3.9e-09 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 37
AccB1I GGYRCC 1 cut(s) 37
AclWI GGATC 1 cut(s) 342
AcsI RAATTY 1 cut(s) 79
AfaI GTAC 1 cut(s) 39
AgsI TTSAA 2 cut(s) 86, 218
AhlI ACTAGT 1 cut(s) 17
AluBI AGCT 1 cut(s) 284
AluI AGCT 1 cut(s) 284
Alw26I GTCTC 1 cut(s) 203
AlwI GGATC 1 cut(s) 342
ApeKI GCWGC 1 cut(s) 398
ApoI RAATTY 1 cut(s) 79
Asp700I GAANNNNTTC 1 cut(s) 63
Asp718I GGTACC 1 cut(s) 37
BanI GGYRCC 1 cut(s) 37
BarI GAAGNNNNNNTAC 2 cut(s) 321, 353
BbvI GCAGC 1 cut(s) 385
BccI CCATC 1 cut(s) 350
BcoDI GTCTC 1 cut(s) 203
BcuI ACTAGT 1 cut(s) 17
BfaI CTAG 2 cut(s) 18, 165
BfmI CTRYAG 1 cut(s) 399
BisI GCNGC 1 cut(s) 399
BlsI GCNGC 1 cut(s) 400
BmiI GGNNCC 1 cut(s) 39
BsaWI WCCGGW 1 cut(s) 34
Bse118I RCCGGY 1 cut(s) 295
BseMII CTCAG 1 cut(s) 429
BseRI GAGGAG 1 cut(s) 278
BseXI GCAGC 1 cut(s) 385
BshNI GGYRCC 1 cut(s) 37
BsiSI CCGG 3 cut(s) 35, 70, 296
BsmAI GTCTC 1 cut(s) 203
BsmBI CGTCTC 1 cut(s) 203
Bsp143I GATC 2 cut(s) 103, 334
BspCNI CTCAG 1 cut(s) 428
BspLI GGNNCC 1 cut(s) 39
BspMAI CTGCAG 1 cut(s) 403
BspPI GGATC 1 cut(s) 342
BspT107I GGYRCC 1 cut(s) 37
BsrFI RCCGGY 1 cut(s) 295
BssAI RCCGGY 1 cut(s) 295
BssMI GATC 2 cut(s) 103, 334
Bst4CI ACNGT 1 cut(s) 426
BstAPI GCANNNNNTGC 1 cut(s) 174
BstDEI CTNAG 1 cut(s) 415
BstKTI GATC 2 cut(s) 106, 337
BstMAI GTCTC 1 cut(s) 203
BstMBI GATC 2 cut(s) 103, 334
BstMWI GCNNNNNNNGC 1 cut(s) 174
BstSFI CTRYAG 1 cut(s) 399
BstV1I GCAGC 1 cut(s) 385
BstX2I RGATCY 1 cut(s) 334
BstYI RGATCY 1 cut(s) 334
BtsIMutI CAGTG 2 cut(s) 422, 423
Cfr10I RCCGGY 1 cut(s) 295
Csp6I GTAC 1 cut(s) 38
CviAII CATG 1 cut(s) 246
CviJI RGCY 2 cut(s) 55, 284
CviKI_1 RGCY 2 cut(s) 55, 284
CviQI GTAC 1 cut(s) 38
DdeI CTNAG 1 cut(s) 415
DpnI GATC 2 cut(s) 105, 336
DpnII GATC 2 cut(s) 103, 334
Esp3I CGTCTC 1 cut(s) 203
FaeI CATG 1 cut(s) 249
FaiI YATR 9 cut(s) 11, 120, 156, 180, 182, 192, 247, 257, 305
FatI CATG 1 cut(s) 245
Fnu4HI GCNGC 1 cut(s) 399
Fsp4HI GCNGC 1 cut(s) 399
FspBI CTAG 2 cut(s) 18, 165
GluI GCNGC 1 cut(s) 399
HapII CCGG 3 cut(s) 35, 70, 296
Hin1II CATG 1 cut(s) 249
HinfI GANTC 3 cut(s) 122, 360, 413
HpaII CCGG 3 cut(s) 35, 70, 296
Hpy188I TCNGA 1 cut(s) 202
Hpy188III TCNNGA 1 cut(s) 226
HpyAV CCTTC 2 cut(s) 171, 244
HpyCH4III ACNGT 1 cut(s) 426
HpyCH4V TGCA 3 cut(s) 50, 239, 401
HpyF10VI GCNNNNNNNGC 1 cut(s) 174
HpyF3I CTNAG 1 cut(s) 415
Hsp92II CATG 1 cut(s) 249
KpnI GGTACC 1 cut(s) 41
Kzo9I GATC 2 cut(s) 103, 334
LpnPI CCDG 4 cut(s) 48, 69, 83, 309
Lsp1109I GCAGC 1 cut(s) 385
MaeI CTAG 2 cut(s) 18, 165
MalI GATC 2 cut(s) 105, 336
MboI GATC 2 cut(s) 103, 334
MboII GAAGA 3 cut(s) 329, 365, 388
MflI RGATCY 1 cut(s) 334
MluCI AATT 4 cut(s) 45, 79, 234, 316
MlyI GAGTC 1 cut(s) 407
MnlI CCTC 2 cut(s) 143, 256
MroXI GAANNNNTTC 1 cut(s) 63
MseI TTAA 2 cut(s) 273, 320
MspA1I CMGCKG 1 cut(s) 284
MspI CCGG 3 cut(s) 35, 70, 296
MwoI GCNNNNNNNGC 1 cut(s) 174
NdeII GATC 2 cut(s) 103, 334
NlaIII CATG 1 cut(s) 249
NlaIV GGNNCC 1 cut(s) 39
PdmI GAANNNNTTC 1 cut(s) 63
PfeI GAWTC 2 cut(s) 122, 360
PkrI GCNGC 1 cut(s) 400
PleI GAGTC 1 cut(s) 407
PpsI GAGTC 1 cut(s) 407
PspN4I GGNNCC 1 cut(s) 39
PstI CTGCAG 1 cut(s) 403
PsuI RGATCY 1 cut(s) 334
PvuII CAGCTG 1 cut(s) 284
RsaI GTAC 1 cut(s) 39
RsaNI GTAC 1 cut(s) 38
SaqAI TTAA 2 cut(s) 273, 320
SatI GCNGC 1 cut(s) 399
Sau3AI GATC 2 cut(s) 103, 334
SchI GAGTC 1 cut(s) 407
SetI ASST 2 cut(s) 163, 286
SfcI CTRYAG 1 cut(s) 399
SpeI ACTAGT 1 cut(s) 17
Sse9I AATT 4 cut(s) 45, 79, 234, 316
SspMI CTAG 2 cut(s) 18, 165
TaaI ACNGT 1 cut(s) 426
TaqI TCGA 2 cut(s) 225, 411
TasI AATT 4 cut(s) 45, 79, 234, 316
TfiI GAWTC 2 cut(s) 122, 360
Tru1I TTAA 2 cut(s) 273, 320
Tru9I TTAA 2 cut(s) 273, 320
TscAI CASTG 2 cut(s) 423, 429
TseI GCWGC 1 cut(s) 398
TspDTI ATGAA 2 cut(s) 100, 197
TspRI CASTG 2 cut(s) 423, 429
XapI RAATTY 1 cut(s) 79
XmnI GAANNNNTTC 1 cut(s) 63
XspI CTAG 2 cut(s) 18, 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.