Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001353.1

Orthogroup ID

OG0000979

Physical Location & Seq

Genomic Coordinates Forward (+)

27480 .. 28037

Gene Structure 558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001353.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

atggatgagtatatgcgtgttgcggcatctagtatcggtaacaccttgcttgcagtggtatctttagtagatatgggagacattataacaaaagagacatttgagtggttgaccaatgatcctaaaattcttagagcttcgaatatcatgtttaggttgatggatgacattgctgggcacaagtttgagaaagagagagggcatgttgcttcttgtatcgattgctacatgaatgaatatggggtctcagcgcaagagacaattggtgtctttaacaaacgaattgtggattcgtggaaggatataaacgaagagtttctgagacccactgctgcgccagtgcctgtgcttaatcgtgttcttaacctaactcgagtggttgatctcctttacaaaaagggagatgccttcacgcatgttggaaaactgatgaaagacactattgcttcactgtttattgatccagtgccactctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00909 map00909

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

158

Amino Acids

17.81

Weight (kDa)

5.36

Isoelectric Point (pI)

33.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000979)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22161 FvH4_3g32081 FvH4_3g32180 FvH4_5g06450 FvH4_6g19300
malus_domestica	MD12G1162800.v1.1 MD12G1163200.v1.1 MD12G1163600.v1.1
prunus_persica	Prupe.4G194000_v2.0.a1 Prupe.4G194700_v2.0.a1 Prupe.4G198800_v2.0.a1
pyrus_communis	pycom07g03220
rosa_chinensis	RchiOBHm_Chr0c17g0499941 RchiOBHm_Chr1g0326031 RchiOBHm_Chr1g0326301 RchiOBHm_Chr4g0406361 RchiOBHm_Chr6g0274881
rosa_laevigata	RLG00000008723 RLG00000014166 RLG00000033702
rosa_multiflora	Rmu_sc0000149.1_g000030 Rmu_sc0001353.1_g000008 Rmu_sc0006272.1_g000013 Rmu_sc0008056.1_g000001 Rmu_sc0011910.1_g000003 Rmu_sc0019563.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044360 Rroxscaffold_2G00123050 Rroxscaffold_2G00127900 Rroxscaffold_2G00128770 Rroxscaffold_3G00225480 Rroxscaffold_3G00235290 Rroxscaffold_4G00317180 Rroxscaffold_4G00320650 Rroxscaffold_4G00320660 Rroxscaffold_6G00393300
rosa_samantha	Rh1BG062100 Rh1CG074300 Rh1DG080600 Rh1DG081600 Rh3BG331000 Rh3CG216000 Rh3CG216300 Rh3CG216700 Rh3DG216700 Rh3DG328000 Rh3DG328300 Rh4CG145600 Rh5CG282500 Rh5DG271000 Rh5DG275500 Rh5DG312500 Rh5DG416000 Rh5DG454000 Rh6BG141200 Rh6BG178000 Rh6BG178100 Rh6BG178200 Rh6CG137600 Rh6CG174100 Rh6CG205100 Rh6CG272400 Rh6DG195900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	86
AciI	CCGC	1 cut(s)	23
AclWI	GGATC	2 cut(s)	113, 455
AcsI	RAATTY	1 cut(s)	126
AluBI	AGCT	1 cut(s)	137
AluI	AGCT	1 cut(s)	137
Alw26I	GTCTC	5 cut(s)	72, 89, 250, 251, 316
AlwI	GGATC	2 cut(s)	113, 455
AlwNI	CAGNNNCTG	1 cut(s)	344
Ama87I	CYCGRG	1 cut(s)	372
ApeKI	GCWGC	1 cut(s)	332
ApoI	RAATTY	1 cut(s)	126
Asp700I	GAANNNNTTC	1 cut(s)	315
AspLEI	GCGC	2 cut(s)	253, 337
AsuII	TTCGAA	1 cut(s)	140
AvaI	CYCGRG	1 cut(s)	372
BaeGI	GKGCMC	1 cut(s)	180
BbvI	GCAGC	1 cut(s)	319
BccI	CCATC	1 cut(s)	154
BcoDI	GTCTC	5 cut(s)	72, 89, 250, 251, 316
BfaI	CTAG	1 cut(s)	30
BisI	GCNGC	2 cut(s)	24, 333
BlsI	GCNGC	2 cut(s)	25, 334
BmeT110I	CYCGRG	1 cut(s)	372
BmsI	GCATC	2 cut(s)	35, 394
Bpu14I	TTCGAA	1 cut(s)	140
Bsa29I	ATCGAT	1 cut(s)	219
BsaI	GGTCTC	2 cut(s)	250, 316
Bse1I	ACTGG	2 cut(s)	338, 464
Bse3DI	GCAATG	1 cut(s)	168
BseCI	ATCGAT	1 cut(s)	219
BseGI	GGATG	2 cut(s)	10, 169
BseMI	GCAATG	1 cut(s)	168
BseMII	CTCAG	2 cut(s)	261, 311
BseNI	ACTGG	2 cut(s)	338, 464
BseSI	GKGCMC	1 cut(s)	180
BseXI	GCAGC	1 cut(s)	319
BseYI	CCCAGC	1 cut(s)	173
BshVI	ATCGAT	1 cut(s)	219
BsiHKCI	CYCGRG	1 cut(s)	372
BsmAI	GTCTC	5 cut(s)	72, 89, 250, 251, 316
Bso31I	GGTCTC	2 cut(s)	250, 316
BsoBI	CYCGRG	1 cut(s)	372
Bsp119I	TTCGAA	1 cut(s)	140
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp143I	GATC	3 cut(s)	118, 382, 460
BspACI	CCGC	1 cut(s)	23
BspCNI	CTCAG	2 cut(s)	260, 312
BspDI	ATCGAT	1 cut(s)	219
BspPI	GGATC	2 cut(s)	113, 455
BspT104I	TTCGAA	1 cut(s)	140
BspTNI	GGTCTC	2 cut(s)	250, 316
BsrDI	GCAATG	1 cut(s)	168
BsrI	ACTGG	2 cut(s)	338, 464
BssMI	GATC	3 cut(s)	118, 382, 460
Bst4CI	ACNGT	1 cut(s)	453
Bst6I	CTCTTC	1 cut(s)	306
BstBI	TTCGAA	1 cut(s)	140
BstC8I	GCNNGC	1 cut(s)	51
BstDEI	CTNAG	3 cut(s)	131, 247, 320
BstF5I	GGATG	2 cut(s)	10, 169
BstHHI	GCGC	2 cut(s)	253, 337
BstKTI	GATC	3 cut(s)	121, 385, 463
BstMAI	GTCTC	5 cut(s)	72, 89, 250, 251, 316
BstMBI	GATC	3 cut(s)	118, 382, 460
BstNSI	RCATGY	2 cut(s)	206, 419
BstSLI	GKGCMC	1 cut(s)	180
BstV1I	GCAGC	1 cut(s)	319
Bsu15I	ATCGAT	1 cut(s)	219
BsuTUI	ATCGAT	1 cut(s)	219
BtsCI	GGATG	2 cut(s)	10, 169
BtsI	GCAGTG	2 cut(s)	60, 327
BtsIMutI	CAGTG	5 cut(s)	60, 327, 345, 449, 471
Cac8I	GCNNGC	1 cut(s)	51
CaiI	CAGNNNCTG	1 cut(s)	344
CfoI	GCGC	2 cut(s)	253, 337
ClaI	ATCGAT	1 cut(s)	219
CviAII	CATG	4 cut(s)	148, 203, 229, 416
CviJI	RGCY	1 cut(s)	137
CviKI_1	RGCY	1 cut(s)	137
DdeI	CTNAG	3 cut(s)	131, 247, 320
DpnI	GATC	3 cut(s)	120, 384, 462
DpnII	GATC	3 cut(s)	118, 382, 460
Eam1104I	CTCTTC	1 cut(s)	306
EarI	CTCTTC	1 cut(s)	306
Eco31I	GGTCTC	2 cut(s)	250, 316
Eco88I	CYCGRG	1 cut(s)	372
FaeI	CATG	4 cut(s)	151, 206, 232, 419
FatI	CATG	4 cut(s)	147, 202, 228, 415
Fnu4HI	GCNGC	2 cut(s)	24, 333
FokI	GGATG	2 cut(s)	17, 176
Fsp4HI	GCNGC	2 cut(s)	24, 333
FspBI	CTAG	1 cut(s)	30
GlaI	GCGC	2 cut(s)	252, 336
GluI	GCNGC	2 cut(s)	24, 333
GsaI	CCCAGC	1 cut(s)	177
HhaI	GCGC	2 cut(s)	253, 337
Hin1II	CATG	4 cut(s)	151, 206, 232, 419
Hin6I	GCGC	2 cut(s)	251, 335
HinP1I	GCGC	2 cut(s)	251, 335
HincII	GTYRAC	1 cut(s)	111
HindII	GTYRAC	1 cut(s)	111
HinfI	GANTC	1 cut(s)	290
Hpy166II	GTNNAC	1 cut(s)	111
Hpy188I	TCNGA	2 cut(s)	321, 476
Hpy8I	GTNNAC	1 cut(s)	111
HpyAV	CCTTC	2 cut(s)	292, 418
HpyCH4III	ACNGT	1 cut(s)	453
HpyCH4V	TGCA	1 cut(s)	53
HpyF3I	CTNAG	3 cut(s)	131, 247, 320
Hsp92II	CATG	4 cut(s)	151, 206, 232, 419
HspAI	GCGC	2 cut(s)	251, 335
Kzo9I	GATC	3 cut(s)	118, 382, 460
LpnPI	CCDG	3 cut(s)	159, 351, 357
Lsp1109I	GCAGC	1 cut(s)	319
LweI	GCATC	2 cut(s)	35, 394
MaeI	CTAG	1 cut(s)	30
MaeIII	GTNAC	1 cut(s)	38
MalI	GATC	3 cut(s)	120, 384, 462
MboI	GATC	3 cut(s)	118, 382, 460
MboII	GAAGA	1 cut(s)	323
MfeI	CAATTG	1 cut(s)	261
MhlI	GDGCHC	1 cut(s)	180
MluCI	AATT	3 cut(s)	126, 261, 282
MmeI	TCCRAC	1 cut(s)	400
MnlI	CCTC	1 cut(s)	191
MroXI	GAANNNNTTC	1 cut(s)	315
MseI	TTAA	3 cut(s)	273, 351, 363
MslI	CAYNNNNRTG	1 cut(s)	103
MunI	CAATTG	1 cut(s)	261
NdeII	GATC	3 cut(s)	118, 382, 460
NlaIII	CATG	4 cut(s)	151, 206, 232, 419
NspI	RCATGY	2 cut(s)	206, 419
NspV	TTCGAA	1 cut(s)	140
PaeR7I	CTCGAG	1 cut(s)	372
PdmI	GAANNNNTTC	1 cut(s)	315
PfeI	GAWTC	1 cut(s)	290
PkrI	GCNGC	2 cut(s)	25, 334
PsiI	TTATAA	1 cut(s)	86
PspFI	CCCAGC	1 cut(s)	173
PspXI	VCTCGAGB	1 cut(s)	372
PstNI	CAGNNNCTG	1 cut(s)	344
RseI	CAYNNNNRTG	1 cut(s)	103
SaqAI	TTAA	3 cut(s)	273, 351, 363
SatI	GCNGC	2 cut(s)	24, 333
Sau3AI	GATC	3 cut(s)	118, 382, 460
SduI	GDGCHC	1 cut(s)	180
SetI	ASST	4 cut(s)	47, 139, 158, 369
SfaNI	GCATC	2 cut(s)	35, 394
Sfr274I	CTCGAG	1 cut(s)	372
SfuI	TTCGAA	1 cut(s)	140
SlaI	CTCGAG	1 cut(s)	372
SmiMI	CAYNNNNRTG	1 cut(s)	103
SmlI	CTYRAG	1 cut(s)	372
SmoI	CTYRAG	1 cut(s)	372
Sse9I	AATT	3 cut(s)	126, 261, 282
SsiI	CCGC	1 cut(s)	23
SspMI	CTAG	1 cut(s)	30
TaaI	ACNGT	1 cut(s)	453
TaqI	TCGA	3 cut(s)	140, 219, 373
TasI	AATT	3 cut(s)	126, 261, 282
TauI	GCSGC	1 cut(s)	26
TfiI	GAWTC	1 cut(s)	290
Tru1I	TTAA	3 cut(s)	273, 351, 363
Tru9I	TTAA	3 cut(s)	273, 351, 363
TscAI	CASTG	5 cut(s)	60, 334, 345, 456, 471
TseI	GCWGC	1 cut(s)	332
TspDTI	ATGAA	3 cut(s)	245, 249, 446
TspRI	CASTG	5 cut(s)	60, 334, 345, 456, 471
XapI	RAATTY	1 cut(s)	126
XceI	RCATGY	2 cut(s)	206, 419
XhoI	CTCGAG	1 cut(s)	372
XmnI	GAANNNNTTC	1 cut(s)	315
XspI	CTAG	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.