Rroxscaffold_4G00320650

(-)-alpha-pinene synthase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000979
Physical Location & Seq
Reverse (-)
49443695 .. 49445616
1922 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00320650.1

Sequence Viewer

Length: 351 bp
ATGAAGCAATATGGTGTTTCAAAGCAAGAGACAATTGATGTTTTCAACAAACAAATTCTGGAATCATGGAAGGATATAAACGAGGAGTTTCTTAAACTAACCGGTGTTCCAATGCCGGTTCTTATGCATTTTCTCAATTTAACAAGATTAGCAGATCTTCTTTACAAGGAAGAAGATGGATTCACACGGGTTGGGAAGATAACCAAAGATAGTGTTGCTGCATTTGGGTTTCCAAGGGATTTTCTTGTGAAGATTCTGAGTGTGAGGAAAGAGAACAAGTTTAGGAAAAGAGAGTACCGAAAATATGAAGATGCGAATGAAGTGGAGGAACCCCATATCTGTTTAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 map00909
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

116

Amino Acids

13.77

Weight (kDa)

8.64

Isoelectric Point (pI)

53.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 54
AfaI GTAC 1 cut(s) 296
AgeI ACCGGT 1 cut(s) 101
AgsI TTSAA 2 cut(s) 21, 46
Alw26I GTCTC 1 cut(s) 23
ApeKI GCWGC 1 cut(s) 218
ApoI RAATTY 1 cut(s) 54
AsiGI ACCGGT 1 cut(s) 101
BbvI GCAGC 1 cut(s) 205
BccI CCATC 1 cut(s) 170
BcoDI GTCTC 1 cut(s) 23
BglII AGATCT 1 cut(s) 154
BisI GCNGC 1 cut(s) 219
BlsI GCNGC 1 cut(s) 220
BmiI GGNNCC 1 cut(s) 330
BmsI GCATC 1 cut(s) 301
BsaJI CCNNGG 1 cut(s) 233
BsaWI WCCGGW 1 cut(s) 101
Bse118I RCCGGY 2 cut(s) 101, 115
BseDI CCNNGG 1 cut(s) 233
BseMII CTCAG 1 cut(s) 248
BseRI GAGGAG 1 cut(s) 98
BseXI GCAGC 1 cut(s) 205
BshTI ACCGGT 1 cut(s) 101
BsiSI CCGG 2 cut(s) 102, 116
BsmAI GTCTC 1 cut(s) 23
Bsp143I GATC 1 cut(s) 154
BspCNI CTCAG 1 cut(s) 249
BspLI GGNNCC 1 cut(s) 330
BsrFI RCCGGY 2 cut(s) 101, 115
BssAI RCCGGY 2 cut(s) 101, 115
BssECI CCNNGG 1 cut(s) 233
BssMI GATC 1 cut(s) 154
BssT1I CCWWGG 1 cut(s) 233
BstDEI CTNAG 1 cut(s) 257
BstKTI GATC 1 cut(s) 157
BstMAI GTCTC 1 cut(s) 23
BstMBI GATC 1 cut(s) 154
BstV1I GCAGC 1 cut(s) 205
BstX2I RGATCY 1 cut(s) 154
BstYI RGATCY 1 cut(s) 154
Cfr10I RCCGGY 2 cut(s) 101, 115
Csp6I GTAC 1 cut(s) 295
CspAI ACCGGT 1 cut(s) 101
CviAII CATG 1 cut(s) 66
CviQI GTAC 1 cut(s) 295
DdeI CTNAG 1 cut(s) 257
DpnI GATC 1 cut(s) 156
DpnII GATC 1 cut(s) 154
Eco130I CCWWGG 1 cut(s) 233
EcoT14I CCWWGG 1 cut(s) 233
EcoT22I ATGCAT 1 cut(s) 129
ErhI CCWWGG 1 cut(s) 233
FaeI CATG 1 cut(s) 69
FaiI YATR 6 cut(s) 12, 67, 77, 125, 306, 336
FatI CATG 1 cut(s) 65
Fnu4HI GCNGC 1 cut(s) 219
Fsp4HI GCNGC 1 cut(s) 219
GluI GCNGC 1 cut(s) 219
HapII CCGG 2 cut(s) 102, 116
Hin1II CATG 1 cut(s) 69
HinfI GANTC 3 cut(s) 62, 180, 253
HpaII CCGG 2 cut(s) 102, 116
Hpy188I TCNGA 1 cut(s) 258
Hpy188III TCNNGA 1 cut(s) 59
HpyAV CCTTC 1 cut(s) 64
HpyCH4V TGCA 2 cut(s) 127, 221
HpyF3I CTNAG 1 cut(s) 257
Hsp92II CATG 1 cut(s) 69
Kzo9I GATC 1 cut(s) 154
LpnPI CCDG 3 cut(s) 44, 115, 129
Lsp1109I GCAGC 1 cut(s) 205
LweI GCATC 1 cut(s) 301
MalI GATC 1 cut(s) 156
MboI GATC 1 cut(s) 154
MboII GAAGA 6 cut(s) 149, 182, 185, 208, 262, 320
MfeI CAATTG 1 cut(s) 33
MflI RGATCY 1 cut(s) 154
MluCI AATT 3 cut(s) 33, 54, 136
MnlI CCTC 3 cut(s) 76, 258, 319
Mph1103I ATGCAT 1 cut(s) 129
MseI TTAA 3 cut(s) 93, 140, 344
MspI CCGG 2 cut(s) 102, 116
MunI CAATTG 1 cut(s) 33
NdeII GATC 1 cut(s) 154
NlaIII CATG 1 cut(s) 69
NlaIV GGNNCC 1 cut(s) 330
NsiI ATGCAT 1 cut(s) 129
PfeI GAWTC 3 cut(s) 62, 180, 253
PinAI ACCGGT 1 cut(s) 101
PkrI GCNGC 1 cut(s) 220
PspN4I GGNNCC 1 cut(s) 330
PsuI RGATCY 1 cut(s) 154
RsaI GTAC 1 cut(s) 296
RsaNI GTAC 1 cut(s) 295
SaqAI TTAA 3 cut(s) 93, 140, 344
SatI GCNGC 1 cut(s) 219
Sau3AI GATC 1 cut(s) 154
SfaNI GCATC 1 cut(s) 301
Sse9I AATT 3 cut(s) 33, 54, 136
StyI CCWWGG 1 cut(s) 233
TasI AATT 3 cut(s) 33, 54, 136
TfiI GAWTC 3 cut(s) 62, 180, 253
Tru1I TTAA 3 cut(s) 93, 140, 344
Tru9I TTAA 3 cut(s) 93, 140, 344
TseI GCWGC 1 cut(s) 218
TspDTI ATGAA 3 cut(s) 17, 321, 333
XapI RAATTY 1 cut(s) 54
Zsp2I ATGCAT 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.