Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0000979

Physical Location & Seq

Genomic Coordinates Reverse (-)

35083107 .. 35102000

Gene Structure 18894 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG195900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGCAAAGGAAGGAAGATCATACCGAGTTCATTATGCAAAAGAGACGATGAAAGCTCTATGCCGAGGTTACTTAAAAGAAGCTCAATGTTTCCATGAAGACTACATCCCAAGTGTGGAGGAGCATATGGAACTTGCACTTGTAACCTGCACCTATCCAATGCTTCTAACTCTAGCTTTAGTTGGCATGGGCGGCAATGTAACAAAGGAGACCTTTGAGTGGATGTCCCAGGGGCCTAAGATTCTTACAGCTTCAGCAACCATTTCGAGGTGCATGGACGACATTGTTGGACACAAGTTCGAACAAGAGAGGGGGCACGCAGCGTCAGGCGTTGAATGCTACATGAAACAGTATGGTGTGTCGGAAAAAGAAGCATGTGATGTGCTTCAAAAGAGAGTCGATAGTGCCTGGAAGGATATAAACTCAGAGATGCTGAAACCAACAGAAATGCCAATTCCAATCCTTCTACCGATTCTGAACTTTGCACGAGTCATGGATGTCCTCTACAAGGTGGAAGACAGCTTCACGCATGTCGCACAACCAGTAAAAGATGGCATTTCTTCATTACTGATAGACCCCGTTCAGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006644 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0010333 GO:0010334 GO:0016829 GO:0016835 GO:0016838 GO:0019637 GO:0042214 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0045338 GO:0046246 GO:0051761 GO:0051762 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00909 ko01100 ko01110 map00909 map01100 map01110

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

196

Amino Acids

22.1

Weight (kDa)

5.53

Isoelectric Point (pI)

49.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Terpene_synth_C	PF03936	1 - 139	1e-49	Terpene synthase family, metal binding domain
Terpene_syn_C_2	PF19086	1 - 139	3.1e-43	Terpene synthase family 2, C-terminal metal binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000979)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22161 FvH4_3g32081 FvH4_3g32180 FvH4_5g06450 FvH4_6g19300
malus_domestica	MD12G1162800.v1.1 MD12G1163200.v1.1 MD12G1163600.v1.1
prunus_persica	Prupe.4G194000_v2.0.a1 Prupe.4G194700_v2.0.a1 Prupe.4G198800_v2.0.a1
pyrus_communis	pycom07g03220
rosa_chinensis	RchiOBHm_Chr0c17g0499941 RchiOBHm_Chr1g0326031 RchiOBHm_Chr1g0326301 RchiOBHm_Chr4g0406361 RchiOBHm_Chr6g0274881
rosa_laevigata	RLG00000008723 RLG00000014166 RLG00000033702
rosa_multiflora	Rmu_sc0000149.1_g000030 Rmu_sc0001353.1_g000008 Rmu_sc0006272.1_g000013 Rmu_sc0008056.1_g000001 Rmu_sc0011910.1_g000003 Rmu_sc0019563.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044360 Rroxscaffold_2G00123050 Rroxscaffold_2G00127900 Rroxscaffold_2G00128770 Rroxscaffold_3G00225480 Rroxscaffold_3G00235290 Rroxscaffold_4G00317180 Rroxscaffold_4G00320650 Rroxscaffold_4G00320660 Rroxscaffold_6G00393300
rosa_samantha	Rh1BG062100 Rh1CG074300 Rh1DG080600 Rh1DG081600 Rh3BG331000 Rh3CG216000 Rh3CG216300 Rh3CG216700 Rh3DG216700 Rh3DG328000 Rh3DG328300 Rh4CG145600 Rh5CG282500 Rh5DG271000 Rh5DG275500 Rh5DG312500 Rh5DG416000 Rh5DG454000 Rh6BG141200 Rh6BG178000 Rh6BG178100 Rh6BG178200 Rh6CG137600 Rh6CG174100 Rh6CG205100 Rh6CG272400 Rh6DG195900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	155
AciI	CCGC	1 cut(s)	192
AcuI	CTGAAG	1 cut(s)	237
AfiI	CCNNNNNNNGG	4 cut(s)	115, 219, 267, 508
AgsI	TTSAA	2 cut(s)	335, 389
AjnI	CCWGG	2 cut(s)	228, 407
AluBI	AGCT	5 cut(s)	56, 83, 176, 251, 522
AluI	AGCT	5 cut(s)	56, 83, 176, 251, 522
Alw26I	GTCTC	2 cut(s)	38, 203
AoxI	GGCC	1 cut(s)	233
ApeKI	GCWGC	1 cut(s)	320
AspS9I	GGNCC	1 cut(s)	233
AsuII	TTCGAA	1 cut(s)	300
BaeGI	GKGCMC	1 cut(s)	318
BauI	CACGAG	1 cut(s)	486
BbsI	GAAGAC	2 cut(s)	105, 522
BbvI	GCAGC	1 cut(s)	332
BccI	CCATC	1 cut(s)	545
BcgI	CGANNNNNNTGC	2 cut(s)	246, 280
BciT130I	CCWGG	2 cut(s)	230, 409
BcoDI	GTCTC	2 cut(s)	38, 203
BfaI	CTAG	1 cut(s)	173
BfuAI	ACCTGC	1 cut(s)	155
BisI	GCNGC	2 cut(s)	193, 321
BlsI	GCNGC	2 cut(s)	194, 322
Bme1390I	CCNGG	2 cut(s)	230, 409
BmgT120I	GGNCC	1 cut(s)	233
BmiI	GGNNCC	1 cut(s)	234
BmrFI	CCNGG	2 cut(s)	230, 409
BmsI	GCATC	1 cut(s)	420
BpiI	GAAGAC	2 cut(s)	105, 522
Bpu14I	TTCGAA	1 cut(s)	300
BsaI	GGTCTC	1 cut(s)	203
BsaJI	CCNNGG	3 cut(s)	64, 228, 229
Bsc4I	CCNNNNNNNGG	4 cut(s)	115, 219, 267, 508
Bse1I	ACTGG	1 cut(s)	542
Bse3DI	GCAATG	1 cut(s)	202
BseBI	CCWGG	2 cut(s)	230, 409
BseDI	CCNNGG	3 cut(s)	64, 228, 229
BseGI	GGATG	3 cut(s)	105, 228, 502
BseLI	CCNNNNNNNGG	4 cut(s)	115, 219, 267, 508
BseMI	GCAATG	1 cut(s)	202
BseMII	CTCAG	1 cut(s)	438
BseNI	ACTGG	1 cut(s)	542
BseRI	GAGGAG	1 cut(s)	134
BseSI	GKGCMC	1 cut(s)	318
BseXI	GCAGC	1 cut(s)	332
BsgI	GTGCAG	1 cut(s)	133
BshFI	GGCC	1 cut(s)	235
BslFI	GGGAC	1 cut(s)	211
BslI	CCNNNNNNNGG	4 cut(s)	115, 219, 267, 508
BsmAI	GTCTC	2 cut(s)	38, 203
BsmBI	CGTCTC	1 cut(s)	38
BsmFI	GGGAC	1 cut(s)	211
BsmI	GAATGC	1 cut(s)	341
BsnI	GGCC	1 cut(s)	235
Bso31I	GGTCTC	1 cut(s)	203
Bsp119I	TTCGAA	1 cut(s)	300
Bsp1286I	GDGCHC	1 cut(s)	318
Bsp143I	GATC	1 cut(s)	17
BspACI	CCGC	1 cut(s)	192
BspANI	GGCC	1 cut(s)	235
BspCNI	CTCAG	1 cut(s)	437
BspLI	GGNNCC	1 cut(s)	234
BspMI	ACCTGC	1 cut(s)	155
BspT104I	TTCGAA	1 cut(s)	300
BspTNI	GGTCTC	1 cut(s)	203
BsrDI	GCAATG	1 cut(s)	202
BsrI	ACTGG	1 cut(s)	542
BssECI	CCNNGG	3 cut(s)	64, 228, 229
BssMI	GATC	1 cut(s)	17
BssSI	CACGAG	1 cut(s)	486
Bst2BI	CACGAG	1 cut(s)	486
Bst2UI	CCWGG	2 cut(s)	230, 409
Bst4CI	ACNGT	1 cut(s)	351
BstBI	TTCGAA	1 cut(s)	300
BstC8I	GCNNGC	1 cut(s)	318
BstDEI	CTNAG	2 cut(s)	237, 424
BstENI	CCTNNNNNAGG	1 cut(s)	506
BstF5I	GGATG	3 cut(s)	105, 228, 502
BstKTI	GATC	1 cut(s)	20
BstMAI	GTCTC	2 cut(s)	38, 203
BstMBI	GATC	1 cut(s)	17
BstMWI	GCNNNNNNNGC	2 cut(s)	192, 336
BstNI	CCWGG	2 cut(s)	230, 409
BstNSI	RCATGY	2 cut(s)	378, 533
BstSCI	CCNGG	2 cut(s)	228, 407
BstSLI	GKGCMC	1 cut(s)	318
BstV1I	GCAGC	1 cut(s)	332
BstV2I	GAAGAC	2 cut(s)	105, 522
BsuRI	GGCC	1 cut(s)	235
BtsCI	GGATG	3 cut(s)	105, 228, 502
BveI	ACCTGC	1 cut(s)	155
Cac8I	GCNNGC	1 cut(s)	318
Cfr13I	GGNCC	1 cut(s)	233
CseI	GACGC	1 cut(s)	312
CviAII	CATG	7 cut(s)	95, 187, 274, 343, 375, 493, 530
CviJI	RGCY	6 cut(s)	56, 83, 176, 235, 251, 522
CviKI_1	RGCY	6 cut(s)	56, 83, 176, 235, 251, 522
DdeI	CTNAG	2 cut(s)	237, 424
DpnI	GATC	1 cut(s)	19
DpnII	GATC	1 cut(s)	17
Eco31I	GGTCTC	1 cut(s)	203
Eco57I	CTGAAG	1 cut(s)	237
EcoNI	CCTNNNNNAGG	1 cut(s)	506
EcoO109I	RGGNCCY	1 cut(s)	233
EcoRII	CCWGG	2 cut(s)	228, 407
Esp3I	CGTCTC	1 cut(s)	38
FaeI	CATG	7 cut(s)	98, 190, 277, 346, 378, 496, 533
FalI	AAGNNNNNCTT	2 cut(s)	197, 229
FaqI	GGGAC	1 cut(s)	211
FatI	CATG	7 cut(s)	94, 186, 273, 342, 374, 492, 529
FauNDI	CATATG	1 cut(s)	126
Fnu4HI	GCNGC	2 cut(s)	193, 321
FokI	GGATG	3 cut(s)	92, 235, 509
Fsp4HI	GCNGC	2 cut(s)	193, 321
FspBI	CTAG	1 cut(s)	173
GluI	GCNGC	2 cut(s)	193, 321
HaeIII	GGCC	1 cut(s)	235
HgaI	GACGC	1 cut(s)	312
Hin1II	CATG	7 cut(s)	98, 190, 277, 346, 378, 496, 533
HinfI	GANTC	4 cut(s)	241, 396, 472, 489
Hpy188I	TCNGA	4 cut(s)	364, 427, 477, 585
HpyAV	CCTTC	3 cut(s)	5, 406, 473
HpyCH4III	ACNGT	1 cut(s)	351
HpyCH4V	TGCA	5 cut(s)	38, 137, 150, 273, 485
HpyF10VI	GCNNNNNNNGC	2 cut(s)	192, 336
HpyF3I	CTNAG	2 cut(s)	237, 424
Hsp92II	CATG	7 cut(s)	98, 190, 277, 346, 378, 496, 533
Kzo9I	GATC	1 cut(s)	17
LmnI	GCTCC	1 cut(s)	121
LpnPI	CCDG	7 cut(s)	160, 215, 242, 312, 394, 421, 555
Lsp1109I	GCAGC	1 cut(s)	332
LweI	GCATC	1 cut(s)	420
MaeI	CTAG	1 cut(s)	173
MaeIII	GTNAC	3 cut(s)	68, 142, 199
MalI	GATC	1 cut(s)	19
MboI	GATC	1 cut(s)	17
MboII	GAAGA	4 cut(s)	27, 110, 527, 552
MhlI	GDGCHC	1 cut(s)	318
MluCI	AATT	1 cut(s)	453
MlyI	GAGTC	2 cut(s)	405, 498
MmeI	TCCRAC	2 cut(s)	268, 342
MnlI	CCTC	5 cut(s)	59, 112, 261, 303, 512
MseI	TTAA	1 cut(s)	74
MspR9I	CCNGG	2 cut(s)	230, 409
Mva1269I	GAATGC	1 cut(s)	341
MvaI	CCWGG	2 cut(s)	230, 409
MwoI	GCNNNNNNNGC	2 cut(s)	192, 336
NdeI	CATATG	1 cut(s)	126
NdeII	GATC	1 cut(s)	17
NlaIII	CATG	7 cut(s)	98, 190, 277, 346, 378, 496, 533
NlaIV	GGNNCC	1 cut(s)	234
NmeAIII	GCCGAG	1 cut(s)	89
NspI	RCATGY	2 cut(s)	378, 533
NspV	TTCGAA	1 cut(s)	300
PasI	CCCWGGG	1 cut(s)	229
PctI	GAATGC	1 cut(s)	341
PfeI	GAWTC	2 cut(s)	241, 472
PkrI	GCNGC	2 cut(s)	194, 322
PleI	GAGTC	2 cut(s)	404, 497
PpsI	GAGTC	2 cut(s)	404, 497
Psp6I	CCWGG	2 cut(s)	228, 407
PspGI	CCWGG	2 cut(s)	228, 407
PspN4I	GGNNCC	1 cut(s)	234
PspPI	GGNCC	1 cut(s)	233
SaqAI	TTAA	1 cut(s)	74
SatI	GCNGC	2 cut(s)	193, 321
Sau3AI	GATC	1 cut(s)	17
Sau96I	GGNCC	1 cut(s)	233
SchI	GAGTC	2 cut(s)	405, 498
ScrFI	CCNGG	2 cut(s)	230, 409
SduI	GDGCHC	1 cut(s)	318
SfaNI	GCATC	1 cut(s)	420
SfuI	TTCGAA	1 cut(s)	300
Sse9I	AATT	1 cut(s)	453
SsiI	CCGC	1 cut(s)	192
SspMI	CTAG	1 cut(s)	173
StyD4I	CCNGG	2 cut(s)	228, 407
TaaI	ACNGT	1 cut(s)	351
TaqI	TCGA	3 cut(s)	266, 300, 399
TasI	AATT	1 cut(s)	453
TauI	GCSGC	1 cut(s)	195
TfiI	GAWTC	2 cut(s)	241, 472
Tru1I	TTAA	1 cut(s)	74
Tru9I	TTAA	1 cut(s)	74
TseI	GCWGC	1 cut(s)	320
TspDTI	ATGAA	5 cut(s)	20, 65, 111, 359, 552
XagI	CCTNNNNNAGG	1 cut(s)	506
XceI	RCATGY	2 cut(s)	378, 533
XspI	CTAG	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.