Rh6CG174100

(-)-alpha-pinene synthase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000979
Physical Location & Seq
Forward (+)
24527033 .. 24587528
60496 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG174100.1

Sequence Viewer

Length: 543 bp
ATGTCGTCTGTGCCAACTAGTTATGTATCATTTCCAGTACCACAAATTGCAAAGCCTGAAATCATTCGCCGGATAGCAAATTTTCAACCAAGCATTTGGGGAGATCAGTTCATCAACTATGATTCCCAAAAAACTTTTGAGAAAGAGAGAGGGCATGCACCTTCTAGCATTGATTGCTATATGAAGCAATATGGTGTTTCAGAGCAAGAGACGATTGACCTTTTCGAGAAACAAATTGAGAAATCATGGAAGGATATAAATGAGGAGTTTCTTAAACCAACTACTATGCCAATGCCGGTTCTTATGCGTGTTCTCAATTTAACAAGAGTAGTGGATCTTCTTTACAAGGGAGAAGATGGATTCACACGAGTTGGGAAGATGACCAAAGATAGTGTTGCTGCATATGAGAGGACCATCACAAAACCTTTAGCAGAGGAGCCGACTGCTGCTGGCGGAGGCACTGGCACCGGCACCGACACGACTTGCTTGCCCCCTCATTCCGGTCCTCCCTACGGTGGTGGCTTAGGGTGCTTTACACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 map00909
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

180

Amino Acids

19.96

Weight (kDa)

5.46

Isoelectric Point (pI)

53.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth_C PF03936 45 - 85 3.5e-10 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 46 - 85 4.3e-09 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 464, 470
AciI CCGC 1 cut(s) 453
AclWI GGATC 1 cut(s) 342
AcsI RAATTY 1 cut(s) 79
AfaI GTAC 1 cut(s) 39
AfiI CCNNNNNNNGG 3 cut(s) 500, 512, 515
AgsI TTSAA 1 cut(s) 86
AhlI ACTAGT 1 cut(s) 17
Alw26I GTCTC 1 cut(s) 203
AlwI GGATC 1 cut(s) 342
ApeKI GCWGC 2 cut(s) 398, 446
ApoI RAATTY 1 cut(s) 79
Asp700I GAANNNNTTC 1 cut(s) 63
AspS9I GGNCC 2 cut(s) 411, 503
AvaII GGWCC 2 cut(s) 411, 503
BanI GGYRCC 2 cut(s) 464, 470
BarI GAAGNNNNNNTAC 2 cut(s) 321, 353
BauI CACGAG 1 cut(s) 366
BbvI GCAGC 2 cut(s) 385, 433
BccI CCATC 2 cut(s) 350, 422
BcgI CGANNNNNNTGC 2 cut(s) 469, 503
BcoDI GTCTC 1 cut(s) 203
BcuI ACTAGT 1 cut(s) 17
BfaI CTAG 2 cut(s) 18, 165
BisI GCNGC 2 cut(s) 399, 447
BlsI GCNGC 2 cut(s) 400, 448
Bme18I GGWCC 2 cut(s) 411, 503
BmgT120I GGNCC 2 cut(s) 411, 503
BmiI GGNNCC 3 cut(s) 438, 466, 472
Bpu10I CCTNAGC 1 cut(s) 523
BsaWI WCCGGW 1 cut(s) 500
Bsc4I CCNNNNNNNGG 3 cut(s) 500, 512, 515
Bse118I RCCGGY 2 cut(s) 295, 467
Bse1I ACTGG 2 cut(s) 35, 466
BseLI CCNNNNNNNGG 3 cut(s) 500, 512, 515
BseNI ACTGG 2 cut(s) 35, 466
BseRI GAGGAG 2 cut(s) 278, 449
BseXI GCAGC 2 cut(s) 385, 433
BshNI GGYRCC 2 cut(s) 464, 470
BsiSI CCGG 4 cut(s) 70, 296, 468, 501
BslI CCNNNNNNNGG 3 cut(s) 500, 512, 515
BsmAI GTCTC 1 cut(s) 203
BsmBI CGTCTC 1 cut(s) 203
Bsp143I GATC 2 cut(s) 103, 334
BspACI CCGC 1 cut(s) 453
BspLI GGNNCC 3 cut(s) 438, 466, 472
BspPI GGATC 1 cut(s) 342
BspT107I GGYRCC 2 cut(s) 464, 470
BsrFI RCCGGY 2 cut(s) 295, 467
BsrI ACTGG 2 cut(s) 35, 466
BssAI RCCGGY 2 cut(s) 295, 467
BssMI GATC 2 cut(s) 103, 334
BssSI CACGAG 1 cut(s) 366
Bst2BI CACGAG 1 cut(s) 366
Bst4CI ACNGT 2 cut(s) 515, 540
BstAPI GCANNNNNTGC 1 cut(s) 174
BstC8I GCNNGC 3 cut(s) 156, 451, 488
BstDEI CTNAG 1 cut(s) 523
BstKTI GATC 2 cut(s) 106, 337
BstMAI GTCTC 1 cut(s) 203
BstMBI GATC 2 cut(s) 103, 334
BstMWI GCNNNNNNNGC 2 cut(s) 174, 528
BstNSI RCATGY 1 cut(s) 158
BstV1I GCAGC 2 cut(s) 385, 433
BstX2I RGATCY 1 cut(s) 334
BstXI CCANNNNNNTGG 1 cut(s) 96
BstYI RGATCY 1 cut(s) 334
BtsIMutI CAGTG 2 cut(s) 459, 536
Cac8I GCNNGC 3 cut(s) 156, 451, 488
Cfr10I RCCGGY 2 cut(s) 295, 467
Cfr13I GGNCC 2 cut(s) 411, 503
Csp6I GTAC 1 cut(s) 38
CspCI CAANNNNNGTGG 2 cut(s) 312, 347
CviAII CATG 2 cut(s) 155, 246
CviJI RGCY 3 cut(s) 55, 439, 522
CviKI_1 RGCY 3 cut(s) 55, 439, 522
CviQI GTAC 1 cut(s) 38
DdeI CTNAG 1 cut(s) 523
DpnI GATC 2 cut(s) 105, 336
DpnII GATC 2 cut(s) 103, 334
EciI GGCGGA 1 cut(s) 468
Eco47I GGWCC 2 cut(s) 411, 503
Esp3I CGTCTC 1 cut(s) 203
FaeI CATG 2 cut(s) 158, 249
FatI CATG 2 cut(s) 154, 245
FauNDI CATATG 1 cut(s) 403
Fnu4HI GCNGC 2 cut(s) 399, 447
Fsp4HI GCNGC 2 cut(s) 399, 447
FspBI CTAG 2 cut(s) 18, 165
GluI GCNGC 2 cut(s) 399, 447
HapII CCGG 4 cut(s) 70, 296, 468, 501
Hin1II CATG 2 cut(s) 158, 249
HinfI GANTC 2 cut(s) 122, 360
HpaII CCGG 4 cut(s) 70, 296, 468, 501
Hpy188I TCNGA 1 cut(s) 202
Hpy188III TCNNGA 1 cut(s) 226
HpyAV CCTTC 2 cut(s) 171, 244
HpyCH4III ACNGT 2 cut(s) 515, 540
HpyCH4V TGCA 3 cut(s) 50, 158, 401
HpyF10VI GCNNNNNNNGC 2 cut(s) 174, 528
HpyF3I CTNAG 1 cut(s) 523
Hsp92II CATG 2 cut(s) 158, 249
Kzo9I GATC 2 cut(s) 103, 334
LmnI GCTCC 1 cut(s) 436
LpnPI CCDG 8 cut(s) 48, 69, 83, 309, 435, 447, 481, 514
Lsp1109I GCAGC 2 cut(s) 385, 433
MaeI CTAG 2 cut(s) 18, 165
MalI GATC 2 cut(s) 105, 336
MboI GATC 2 cut(s) 103, 334
MboII GAAGA 3 cut(s) 329, 365, 388
MflI RGATCY 1 cut(s) 334
MluCI AATT 4 cut(s) 45, 79, 234, 316
MnlI CCTC 7 cut(s) 143, 256, 402, 427, 449, 504, 516
MroXI GAANNNNTTC 1 cut(s) 63
MseI TTAA 2 cut(s) 273, 320
MspI CCGG 4 cut(s) 70, 296, 468, 501
MwoI GCNNNNNNNGC 2 cut(s) 174, 528
NdeI CATATG 1 cut(s) 403
NdeII GATC 2 cut(s) 103, 334
NlaIII CATG 2 cut(s) 158, 249
NlaIV GGNNCC 3 cut(s) 438, 466, 472
NspI RCATGY 1 cut(s) 158
PaeI GCATGC 1 cut(s) 158
PdmI GAANNNNTTC 1 cut(s) 63
PfeI GAWTC 2 cut(s) 122, 360
PkrI GCNGC 2 cut(s) 400, 448
PspN4I GGNNCC 3 cut(s) 438, 466, 472
PspPI GGNCC 2 cut(s) 411, 503
PsuI RGATCY 1 cut(s) 334
RsaI GTAC 1 cut(s) 39
RsaNI GTAC 1 cut(s) 38
SaqAI TTAA 2 cut(s) 273, 320
SatI GCNGC 2 cut(s) 399, 447
Sau3AI GATC 2 cut(s) 103, 334
Sau96I GGNCC 2 cut(s) 411, 503
SetI ASST 3 cut(s) 163, 222, 427
SinI GGWCC 2 cut(s) 411, 503
SpeI ACTAGT 1 cut(s) 17
SphI GCATGC 1 cut(s) 158
Sse9I AATT 4 cut(s) 45, 79, 234, 316
SsiI CCGC 1 cut(s) 453
SspMI CTAG 2 cut(s) 18, 165
TaaI ACNGT 2 cut(s) 515, 540
TaqI TCGA 1 cut(s) 225
TasI AATT 4 cut(s) 45, 79, 234, 316
TfiI GAWTC 2 cut(s) 122, 360
Tru1I TTAA 2 cut(s) 273, 320
Tru9I TTAA 2 cut(s) 273, 320
TscAI CASTG 2 cut(s) 466, 543
TseI GCWGC 2 cut(s) 398, 446
TspDTI ATGAA 2 cut(s) 100, 197
TspRI CASTG 2 cut(s) 466, 543
VpaK11BI GGWCC 2 cut(s) 411, 503
XapI RAATTY 1 cut(s) 79
XceI RCATGY 1 cut(s) 158
XmnI GAANNNNTTC 1 cut(s) 63
XspI CTAG 2 cut(s) 18, 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.