Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000979

Physical Location & Seq

Genomic Coordinates Reverse (-)

32970828 .. 33008962

Gene Structure 38135 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG271000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGGGCATGAGTTTGAGCAAAAGAGAGGACATGTTGCCTCGGCTGTGGAATGTTACATGAAACAATACGGTGCGACAGAAGAACAAACCATAATTGAATTTCGTAAACAAGTGAGTGATGCATGGAAGGACATAAATGAAGAGTGCCTCCACCCTACACCTCTTGAAATGCCGCTCTTAATGCGAGTTCTGAATCTCACACGCGTGATAGATGTAGTATACAAGTCTGAAGATGGCTACACTCATGCTGGAACCATTCTCAAAGATTTTGTAGCTTCTCTACTTATCGAACCTGTGCCTGTGCCTCTATTGGCTGCGGAGCCTGGATTGAAATTCCAAAAAAATGAGGACGGCGAGTACGCATATTTCGAGTATTCCAAAAATGTAGCTTCCATAGCTGTGAGATGCTTGATATTGATGGAGTCATGGAGAGAATTAGGGACAAAGCAAGGAGCTAGGAAGAAACCGTACAAAACGGAGAACGTCATCATGTCTGGAGGAGCTTCAATCCTCGACAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00909 map00909

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

173

Amino Acids

19.57

Weight (kDa)

5.45

Isoelectric Point (pI)

52.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Terpene_synth_C	PF03936	2 - 44	1.4e-12	Terpene synthase family, metal binding domain
Terpene_syn_C_2	PF19086	2 - 44	8e-10	Terpene synthase family 2, C-terminal metal binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000979)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22161 FvH4_3g32081 FvH4_3g32180 FvH4_5g06450 FvH4_6g19300
malus_domestica	MD12G1162800.v1.1 MD12G1163200.v1.1 MD12G1163600.v1.1
prunus_persica	Prupe.4G194000_v2.0.a1 Prupe.4G194700_v2.0.a1 Prupe.4G198800_v2.0.a1
pyrus_communis	pycom07g03220
rosa_chinensis	RchiOBHm_Chr0c17g0499941 RchiOBHm_Chr1g0326031 RchiOBHm_Chr1g0326301 RchiOBHm_Chr4g0406361 RchiOBHm_Chr6g0274881
rosa_laevigata	RLG00000008723 RLG00000014166 RLG00000033702
rosa_multiflora	Rmu_sc0000149.1_g000030 Rmu_sc0001353.1_g000008 Rmu_sc0006272.1_g000013 Rmu_sc0008056.1_g000001 Rmu_sc0011910.1_g000003 Rmu_sc0019563.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044360 Rroxscaffold_2G00123050 Rroxscaffold_2G00127900 Rroxscaffold_2G00128770 Rroxscaffold_3G00225480 Rroxscaffold_3G00235290 Rroxscaffold_4G00317180 Rroxscaffold_4G00320650 Rroxscaffold_4G00320660 Rroxscaffold_6G00393300
rosa_samantha	Rh1BG062100 Rh1CG074300 Rh1DG080600 Rh1DG081600 Rh3BG331000 Rh3CG216000 Rh3CG216300 Rh3CG216700 Rh3DG216700 Rh3DG328000 Rh3DG328300 Rh4CG145600 Rh5CG282500 Rh5DG271000 Rh5DG275500 Rh5DG312500 Rh5DG416000 Rh5DG454000 Rh6BG141200 Rh6BG178000 Rh6BG178100 Rh6BG178200 Rh6CG137600 Rh6CG174100 Rh6CG205100 Rh6CG272400 Rh6DG195900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	175
AccI	GTMKAC	1 cut(s)	219
AccII	CGCG	1 cut(s)	204
AciI	CCGC	2 cut(s)	173, 317
AcsI	RAATTY	2 cut(s)	98, 332
AcuI	CTGAAG	1 cut(s)	249
AfaI	GTAC	2 cut(s)	359, 470
AflIII	ACRYGT	2 cut(s)	31, 202
AgsI	TTSAA	4 cut(s)	98, 167, 331, 507
AjnI	CCWGG	1 cut(s)	322
AleI	CACNNNNGTG	1 cut(s)	203
AluBI	AGCT	5 cut(s)	275, 389, 398, 455, 503
AluI	AGCT	5 cut(s)	275, 389, 398, 455, 503
ApeKI	GCWGC	1 cut(s)	314
ApoI	RAATTY	2 cut(s)	98, 332
BarI	GAAGNNNNNNTAC	2 cut(s)	452, 484
BbvI	GCAGC	1 cut(s)	301
BccI	CCATC	2 cut(s)	227, 412
BceAI	ACGGC	1 cut(s)	367
BciT130I	CCWGG	1 cut(s)	324
BfaI	CTAG	1 cut(s)	456
BisI	GCNGC	2 cut(s)	173, 315
BlsI	GCNGC	2 cut(s)	174, 316
Bme1390I	CCNGG	1 cut(s)	324
BmiI	GGNNCC	2 cut(s)	253, 321
BmrFI	CCNGG	1 cut(s)	324
BmsI	GCATC	2 cut(s)	109, 395
BpmI	CTGGAG	1 cut(s)	516
BsaJI	CCNNGG	1 cut(s)	39
BseBI	CCWGG	1 cut(s)	324
BseDI	CCNNGG	1 cut(s)	39
BseRI	GAGGAG	1 cut(s)	513
BseXI	GCAGC	1 cut(s)	301
Bsh1236I	CGCG	1 cut(s)	204
BslFI	GGGAC	1 cut(s)	454
BsmFI	GGGAC	1 cut(s)	454
BspACI	CCGC	2 cut(s)	173, 317
BspFNI	CGCG	1 cut(s)	204
BspLI	GGNNCC	2 cut(s)	253, 321
BsrBI	CCGCTC	1 cut(s)	175
BssECI	CCNNGG	1 cut(s)	39
BssNAI	GTATAC	1 cut(s)	220
Bst1107I	GTATAC	1 cut(s)	220
Bst2UI	CCWGG	1 cut(s)	324
Bst4CI	ACNGT	2 cut(s)	71, 468
Bst6I	CTCTTC	1 cut(s)	135
BstFNI	CGCG	1 cut(s)	204
BstMWI	GCNNNNNNNGC	2 cut(s)	181, 395
BstNI	CCWGG	1 cut(s)	324
BstNSI	RCATGY	1 cut(s)	35
BstSCI	CCNGG	1 cut(s)	322
BstUI	CGCG	1 cut(s)	204
BstV1I	GCAGC	1 cut(s)	301
BstZ17I	GTATAC	1 cut(s)	220
Csp6I	GTAC	2 cut(s)	358, 469
CviAII	CATG	7 cut(s)	8, 32, 58, 123, 245, 426, 490
CviJI	RGCY	9 cut(s)	44, 237, 275, 314, 322, 389, 398, 455, 503
CviKI_1	RGCY	9 cut(s)	44, 237, 275, 314, 322, 389, 398, 455, 503
CviQI	GTAC	2 cut(s)	358, 469
Eam1104I	CTCTTC	1 cut(s)	135
EarI	CTCTTC	1 cut(s)	135
Eco57I	CTGAAG	1 cut(s)	249
EcoRII	CCWGG	1 cut(s)	322
EcoT22I	ATGCAT	1 cut(s)	124
FaeI	CATG	7 cut(s)	11, 35, 61, 126, 248, 429, 493
FaqI	GGGAC	1 cut(s)	454
FatI	CATG	7 cut(s)	7, 31, 57, 122, 244, 425, 489
FblI	GTMKAC	1 cut(s)	219
Fnu4HI	GCNGC	2 cut(s)	173, 315
Fsp4HI	GCNGC	2 cut(s)	173, 315
FspBI	CTAG	1 cut(s)	456
GluI	GCNGC	2 cut(s)	173, 315
GsuI	CTGGAG	1 cut(s)	516
Hin1II	CATG	7 cut(s)	11, 35, 61, 126, 248, 429, 493
HinfI	GANTC	2 cut(s)	193, 422
Hpy166II	GTNNAC	2 cut(s)	107, 220
Hpy188I	TCNGA	2 cut(s)	192, 229
Hpy188III	TCNNGA	2 cut(s)	164, 495
Hpy8I	GTNNAC	2 cut(s)	107, 220
HpyAV	CCTTC	1 cut(s)	121
HpyCH4III	ACNGT	2 cut(s)	71, 468
HpyCH4IV	ACGT	1 cut(s)	483
HpyCH4V	TGCA	1 cut(s)	122
HpyF10VI	GCNNNNNNNGC	2 cut(s)	181, 395
HpySE526I	ACGT	1 cut(s)	483
Hsp92II	CATG	7 cut(s)	11, 35, 61, 126, 248, 429, 493
LmnI	GCTCC	3 cut(s)	319, 452, 500
LpnPI	CCDG	6 cut(s)	234, 306, 309, 312, 336, 480
Lsp1109I	GCAGC	1 cut(s)	301
LweI	GCATC	2 cut(s)	109, 395
MaeI	CTAG	1 cut(s)	456
MaeII	ACGT	1 cut(s)	483
MaeIII	GTNAC	1 cut(s)	53
MbiI	CCGCTC	1 cut(s)	175
MboII	GAAGA	4 cut(s)	92, 152, 242, 472
MfeI	CAATTG	1 cut(s)	517
MluCI	AATT	5 cut(s)	93, 98, 332, 434, 517
MluI	ACGCGT	1 cut(s)	202
MlyI	GAGTC	1 cut(s)	431
MnlI	CCTC	8 cut(s)	20, 49, 158, 171, 315, 340, 491, 521
Mph1103I	ATGCAT	1 cut(s)	124
MseI	TTAA	1 cut(s)	179
MslI	CAYNNNNRTG	2 cut(s)	203, 398
MspR9I	CCNGG	1 cut(s)	324
MunI	CAATTG	1 cut(s)	517
MvaI	CCWGG	1 cut(s)	324
MvnI	CGCG	1 cut(s)	204
MwoI	GCNNNNNNNGC	2 cut(s)	181, 395
NlaIII	CATG	7 cut(s)	11, 35, 61, 126, 248, 429, 493
NlaIV	GGNNCC	2 cut(s)	253, 321
NmeAIII	GCCGAG	1 cut(s)	20
NsiI	ATGCAT	1 cut(s)	124
NspI	RCATGY	1 cut(s)	35
OliI	CACNNNNGTG	1 cut(s)	203
PciI	ACATGT	1 cut(s)	31
PcsI	WCGNNNNNNNCGW	1 cut(s)	366
PfeI	GAWTC	1 cut(s)	193
PkrI	GCNGC	2 cut(s)	174, 316
PleI	GAGTC	1 cut(s)	430
PpsI	GAGTC	1 cut(s)	430
PscI	ACATGT	1 cut(s)	31
Psp6I	CCWGG	1 cut(s)	322
PspGI	CCWGG	1 cut(s)	322
PspN4I	GGNNCC	2 cut(s)	253, 321
RsaI	GTAC	2 cut(s)	359, 470
RsaNI	GTAC	2 cut(s)	358, 469
RseI	CAYNNNNRTG	2 cut(s)	203, 398
SaqAI	TTAA	1 cut(s)	179
SatI	GCNGC	2 cut(s)	173, 315
SchI	GAGTC	1 cut(s)	431
ScrFI	CCNGG	1 cut(s)	324
SetI	ASST	8 cut(s)	163, 277, 295, 391, 400, 457, 486, 505
SfaNI	GCATC	2 cut(s)	109, 395
SmiMI	CAYNNNNRTG	2 cut(s)	203, 398
Sse9I	AATT	5 cut(s)	93, 98, 332, 434, 517
SsiI	CCGC	2 cut(s)	173, 317
SspMI	CTAG	1 cut(s)	456
StyD4I	CCNGG	1 cut(s)	322
TaaI	ACNGT	2 cut(s)	71, 468
TaiI	ACGT	1 cut(s)	486
TaqI	TCGA	3 cut(s)	288, 369, 513
TasI	AATT	5 cut(s)	93, 98, 332, 434, 517
TauI	GCSGC	1 cut(s)	175
TfiI	GAWTC	1 cut(s)	193
Tru1I	TTAA	1 cut(s)	179
Tru9I	TTAA	1 cut(s)	179
TseI	GCWGC	1 cut(s)	314
TspDTI	ATGAA	2 cut(s)	74, 153
TspGWI	ACGGA	1 cut(s)	491
XapI	RAATTY	2 cut(s)	98, 332
XceI	RCATGY	1 cut(s)	35
XmiI	GTMKAC	1 cut(s)	219
XspI	CTAG	1 cut(s)	456
Zsp2I	ATGCAT	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.