Rh6BG178100

(-)-alpha-pinene synthase-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Forward (+)
30428802 .. 30460479
31678 bp
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UTR
Exon/CDS
Intron
Rh6BG178100.1

Sequence Viewer

Length: 402 bp
ATGTCGTCTGTGCCAACTAATTGTGTATCATTTCCAGTACCACAAATTGCAGAGCCTGAAATCAGTCGCCGGATAGCAAATTTTCAACCAAGCATTTGGGGAGATCAGTTCATCAACTATGATTCCCAAAAAACTATGAAAGTTCAGGCTCGATCATTTTTCAACGAGGCCCAATGGTTGCAAGAAGGACGCACTCCGAGCATGGAAGAATATATGAGTGTTGCTACAGTTTCTGTTACTTACACTTTTATAACAACCATTTCATTACTTGGCATGGGAGATATTGTAACGAAGGATGCATTTGAGTGGTTGTTGGATGACCCGAAAATTGTTAGCGCTTCCAATATCATTTTTAGCCTCATGGATGACATTGTTTCCACCAAGGGTATCGTTGTTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

133

Amino Acids

14.87

Weight (kDa)

4.44

Isoelectric Point (pI)

50.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_syn_C_2 PF19086 23 - 128 1.5e-20 Terpene synthase family 2, C-terminal metal binding
Terpene_synth_C PF03936 38 - 128 5e-26 Terpene synthase family, metal binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 251
AcsI RAATTY 1 cut(s) 79
AfaI GTAC 1 cut(s) 39
AfeI AGCGCT 1 cut(s) 337
AgsI TTSAA 2 cut(s) 86, 163
AlwNI CAGNNNCTG 2 cut(s) 56, 233
Aor51HI AGCGCT 1 cut(s) 337
AoxI GGCC 1 cut(s) 168
ApoI RAATTY 1 cut(s) 79
AspLEI GCGC 1 cut(s) 338
AspS9I GGNCC 1 cut(s) 169
BfmI CTRYAG 1 cut(s) 225
BfoI RGCGCY 1 cut(s) 339
BmgT120I GGNCC 1 cut(s) 169
BmsI GCATC 1 cut(s) 286
BsaJI CCNNGG 1 cut(s) 381
BsaXI ACNNNNNCTCC 2 cut(s) 270, 300
Bse1I ACTGG 1 cut(s) 35
BseDI CCNNGG 1 cut(s) 381
BseGI GGATG 3 cut(s) 301, 322, 370
BseNI ACTGG 1 cut(s) 35
BshFI GGCC 1 cut(s) 170
BsiSI CCGG 1 cut(s) 70
BsnI GGCC 1 cut(s) 170
Bsp143I GATC 2 cut(s) 103, 152
BspANI GGCC 1 cut(s) 170
BsrI ACTGG 1 cut(s) 35
BssECI CCNNGG 1 cut(s) 381
BssMI GATC 2 cut(s) 103, 152
BssT1I CCWWGG 1 cut(s) 381
Bst4CI ACNGT 1 cut(s) 229
BstF5I GGATG 3 cut(s) 301, 322, 370
BstH2I RGCGCY 1 cut(s) 339
BstHHI GCGC 1 cut(s) 338
BstKTI GATC 2 cut(s) 106, 155
BstMBI GATC 2 cut(s) 103, 152
BstMWI GCNNNNNNNGC 1 cut(s) 198
BstSFI CTRYAG 1 cut(s) 225
BstXI CCANNNNNNTGG 1 cut(s) 96
BsuRI GGCC 1 cut(s) 170
BtsCI GGATG 3 cut(s) 301, 322, 370
CaiI CAGNNNCTG 2 cut(s) 56, 233
CfoI GCGC 1 cut(s) 338
Cfr13I GGNCC 1 cut(s) 169
CseI GACGC 1 cut(s) 198
Csp6I GTAC 1 cut(s) 38
CviAII CATG 3 cut(s) 202, 274, 361
CviJI RGCY 4 cut(s) 55, 149, 170, 357
CviKI_1 RGCY 4 cut(s) 55, 149, 170, 357
CviQI GTAC 1 cut(s) 38
DpnI GATC 2 cut(s) 105, 154
DpnII GATC 2 cut(s) 103, 152
Eco130I CCWWGG 1 cut(s) 381
Eco47III AGCGCT 1 cut(s) 337
EcoT14I CCWWGG 1 cut(s) 381
EcoT22I ATGCAT 1 cut(s) 301
ErhI CCWWGG 1 cut(s) 381
FaeI CATG 3 cut(s) 205, 277, 364
FaiI YATR 8 cut(s) 120, 137, 203, 213, 215, 251, 275, 362
FatI CATG 3 cut(s) 201, 273, 360
FokI GGATG 3 cut(s) 308, 329, 377
GlaI GCGC 1 cut(s) 337
HaeII RGCGCY 1 cut(s) 339
HaeIII GGCC 1 cut(s) 170
HapII CCGG 1 cut(s) 70
HgaI GACGC 1 cut(s) 198
HhaI GCGC 1 cut(s) 338
Hin1II CATG 3 cut(s) 205, 277, 364
Hin6I GCGC 1 cut(s) 336
HinP1I GCGC 1 cut(s) 336
HinfI GANTC 1 cut(s) 122
HpaII CCGG 1 cut(s) 70
Hpy188I TCNGA 1 cut(s) 198
HpyAV CCTTC 2 cut(s) 179, 286
HpyCH4III ACNGT 1 cut(s) 229
HpyCH4V TGCA 3 cut(s) 50, 181, 299
HpyF10VI GCNNNNNNNGC 1 cut(s) 198
Hsp92II CATG 3 cut(s) 205, 277, 364
HspAI GCGC 1 cut(s) 336
Kzo9I GATC 2 cut(s) 103, 152
LpnPI CCDG 4 cut(s) 48, 69, 83, 131
LweI GCATC 1 cut(s) 286
MaeIII GTNAC 2 cut(s) 235, 286
MalI GATC 2 cut(s) 105, 154
MboI GATC 2 cut(s) 103, 152
MboII GAAGA 1 cut(s) 218
MluCI AATT 4 cut(s) 19, 45, 79, 327
MmeI TCCRAC 1 cut(s) 294
MnlI CCTC 2 cut(s) 160, 368
Mph1103I ATGCAT 1 cut(s) 301
MslI CAYNNNNRTG 1 cut(s) 304
MspI CCGG 1 cut(s) 70
MwoI GCNNNNNNNGC 1 cut(s) 198
NdeII GATC 2 cut(s) 103, 152
NlaIII CATG 3 cut(s) 205, 277, 364
NsiI ATGCAT 1 cut(s) 301
PfeI GAWTC 1 cut(s) 122
PsiI TTATAA 1 cut(s) 251
PspPI GGNCC 1 cut(s) 169
PstNI CAGNNNCTG 2 cut(s) 56, 233
RsaI GTAC 1 cut(s) 39
RsaNI GTAC 1 cut(s) 38
RseI CAYNNNNRTG 1 cut(s) 304
Sau3AI GATC 2 cut(s) 103, 152
Sau96I GGNCC 1 cut(s) 169
SfaNI GCATC 1 cut(s) 286
SfcI CTRYAG 1 cut(s) 225
SmiMI CAYNNNNRTG 1 cut(s) 304
Sse9I AATT 4 cut(s) 19, 45, 79, 327
StyI CCWWGG 1 cut(s) 381
TaaI ACNGT 1 cut(s) 229
TaqI TCGA 1 cut(s) 151
TasI AATT 4 cut(s) 19, 45, 79, 327
TfiI GAWTC 1 cut(s) 122
TspDTI ATGAA 3 cut(s) 100, 152, 252
XapI RAATTY 1 cut(s) 79
Zsp2I ATGCAT 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.