RchiOBHm_Chr1g0326301

synthase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
14647121 .. 14647515
395 bp
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UTR
Exon/CDS
Intron
PRQ55594

Sequence Viewer

Length: 261 bp
ATGAATGACCTTGTAGGCCATAAGTTTGAGCAAAAGAGAGAACACATTGCATCAGCAGTGGAATGCTACATGAAGCAATATGGTGTCACAGAAGAAGAAGCAGAAGTTGAGCTAACTAAACAAGTGAATGACTCATGGCAAGACATAAACGAAGAGTGGCTCGATGCCACCTCTATCCCTAGGCCCCTACTCTTGCTGATTTTGAACTTTGCACGTGTTGGCGTGAGTCATACTTACCTTATTTATGTAGATATTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

86

Amino Acids

10.01

Weight (kDa)

4.63

Isoelectric Point (pI)

51.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth_C PF03936 1 - 48 3.7e-15 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 1 - 48 3.1e-13 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcvI CACGTG 1 cut(s) 215
AflIII ACRYGT 1 cut(s) 214
AgsI TTSAA 1 cut(s) 205
AluBI AGCT 1 cut(s) 112
AluI AGCT 1 cut(s) 112
AoxI GGCC 2 cut(s) 16, 182
AspA2I CCTAGG 1 cut(s) 179
AspS9I GGNCC 1 cut(s) 183
AvrII CCTAGG 1 cut(s) 179
BbrPI CACGTG 1 cut(s) 215
BfaI CTAG 1 cut(s) 180
BlnI CCTAGG 1 cut(s) 179
BmgT120I GGNCC 1 cut(s) 183
BmiI GGNNCC 1 cut(s) 185
BmsI GCATC 2 cut(s) 59, 154
BsaAI YACGTR 1 cut(s) 215
BsaJI CCNNGG 1 cut(s) 179
Bse3DI GCAATG 1 cut(s) 45
BseDI CCNNGG 1 cut(s) 179
BseMI GCAATG 1 cut(s) 45
BshFI GGCC 2 cut(s) 18, 184
BsmI GAATGC 1 cut(s) 68
BsnI GGCC 2 cut(s) 18, 184
BspANI GGCC 2 cut(s) 18, 184
BspLI GGNNCC 1 cut(s) 185
BsrDI GCAATG 1 cut(s) 45
BssECI CCNNGG 1 cut(s) 179
BssT1I CCWWGG 1 cut(s) 179
Bst6I CTCTTC 1 cut(s) 147
BstBAI YACGTR 1 cut(s) 215
BsuRI GGCC 2 cut(s) 18, 184
BtsI GCAGTG 1 cut(s) 63
BtsIMutI CAGTG 1 cut(s) 63
Cfr13I GGNCC 1 cut(s) 183
CviAII CATG 2 cut(s) 70, 135
CviJI RGCY 4 cut(s) 18, 112, 160, 184
CviKI_1 RGCY 4 cut(s) 18, 112, 160, 184
Eam1104I CTCTTC 1 cut(s) 147
EarI CTCTTC 1 cut(s) 147
Eco130I CCWWGG 1 cut(s) 179
Eco72I CACGTG 1 cut(s) 215
EcoO109I RGGNCCY 1 cut(s) 183
EcoT14I CCWWGG 1 cut(s) 179
ErhI CCWWGG 1 cut(s) 179
FaeI CATG 2 cut(s) 73, 138
FaiI YATR 7 cut(s) 21, 71, 81, 136, 146, 231, 246
FatI CATG 2 cut(s) 69, 134
FspBI CTAG 1 cut(s) 180
HaeIII GGCC 2 cut(s) 18, 184
Hin1II CATG 2 cut(s) 73, 138
HinfI GANTC 2 cut(s) 131, 226
HpyCH4IV ACGT 1 cut(s) 214
HpyCH4V TGCA 2 cut(s) 50, 212
HpySE526I ACGT 1 cut(s) 214
Hsp92II CATG 2 cut(s) 73, 138
LweI GCATC 2 cut(s) 59, 154
MaeI CTAG 1 cut(s) 180
MaeII ACGT 1 cut(s) 214
MaeIII GTNAC 1 cut(s) 85
MboII GAAGA 3 cut(s) 104, 107, 164
MlyI GAGTC 2 cut(s) 125, 235
MnlI CCTC 1 cut(s) 181
Mva1269I GAATGC 1 cut(s) 68
NlaIII CATG 2 cut(s) 73, 138
NlaIV GGNNCC 1 cut(s) 185
NmuCI GTSAC 1 cut(s) 85
PctI GAATGC 1 cut(s) 68
PleI GAGTC 2 cut(s) 125, 234
PmaCI CACGTG 1 cut(s) 215
PmlI CACGTG 1 cut(s) 215
PpsI GAGTC 2 cut(s) 125, 234
Ppu21I YACGTR 1 cut(s) 215
PspCI CACGTG 1 cut(s) 215
PspN4I GGNNCC 1 cut(s) 185
PspPI GGNCC 1 cut(s) 183
Sau96I GGNCC 1 cut(s) 183
SchI GAGTC 2 cut(s) 125, 235
SetI ASST 5 cut(s) 12, 114, 173, 217, 240
SfaNI GCATC 2 cut(s) 59, 154
SspMI CTAG 1 cut(s) 180
StyI CCWWGG 1 cut(s) 179
TaiI ACGT 1 cut(s) 217
TaqI TCGA 1 cut(s) 162
TscAI CASTG 1 cut(s) 63
TseFI GTSAC 1 cut(s) 85
Tsp45I GTSAC 1 cut(s) 85
TspDTI ATGAA 2 cut(s) 17, 86
TspRI CASTG 1 cut(s) 63
XmaJI CCTAGG 1 cut(s) 179
XspI CTAG 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.