Rh3BG331000

(-)-alpha-pinene synthase-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
Physical Location & Seq
Forward (+)
34609013 .. 34611617
2605 bp
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UTR
Exon/CDS
Intron
Rh3BG331000.1

Sequence Viewer

Length: 450 bp
ATGTCGTCTATGCCAATTATTTCTGCATCATTTCAAGTACCGCAAATTGCAAAGCTTGAAATTGTTCGCCGGACGGCAAATTTTCCACCAAGCATATGGGGAGATCGCTTCATCAACTATGATTCCCAACACACTATAAAACTCAATATTACTCCATTTGAGAAAGTGAGAGGACATGCACCTTCTACCATTGATTGCTACATGAAGCAATATGGAGTTTCTGAGCAAGAGACCGTCGACGTATTCAACAAAAAAGTTGCAGATTTGTGGAAGGATATAAATGAGGAGTTTCTTAGACCAACCGCTGTGCCAACGCCGGTTCTTGTGCGTGTTCTCAATTTAACAAGAGTAACTGATCTCCTTTACAAAGGGGAAGATGGTTTCACACGGGTTGGGAAGATGATCAAAGATTGTGTTGCCGCGCTCCTTATCGATCCAGTGCCACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

149

Amino Acids

16.88

Weight (kDa)

7.76

Isoelectric Point (pI)

51.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth_C PF03936 53 - 92 2.3e-08 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 53 - 92 9.7e-08 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 237
AccII CGCG 1 cut(s) 422
AciI CCGC 3 cut(s) 41, 303, 420
AclWI GGATC 1 cut(s) 428
AcsI RAATTY 1 cut(s) 79
AfaI GTAC 1 cut(s) 39
AgsI TTSAA 3 cut(s) 35, 59, 247
AluBI AGCT 1 cut(s) 55
AluI AGCT 1 cut(s) 55
Alw26I GTCTC 1 cut(s) 224
AlwI GGATC 1 cut(s) 428
ApoI RAATTY 1 cut(s) 79
Asp700I GAANNNNTTC 1 cut(s) 63
AspLEI GCGC 1 cut(s) 424
BccI CCATC 1 cut(s) 371
BceAI ACGGC 1 cut(s) 90
BclI TGATCA 1 cut(s) 402
BcoDI GTCTC 1 cut(s) 224
BisI GCNGC 1 cut(s) 420
BlsI GCNGC 1 cut(s) 421
BmsI GCATC 1 cut(s) 35
Bsa29I ATCGAT 1 cut(s) 432
BsaI GGTCTC 1 cut(s) 224
Bse118I RCCGGY 1 cut(s) 316
Bse1I ACTGG 1 cut(s) 437
BseCI ATCGAT 1 cut(s) 432
BseMII CTCAG 1 cut(s) 213
BseNI ACTGG 1 cut(s) 437
BseRI GAGGAG 1 cut(s) 299
Bsh1236I CGCG 1 cut(s) 422
BshVI ATCGAT 1 cut(s) 432
BsiSI CCGG 2 cut(s) 70, 317
BsmAI GTCTC 1 cut(s) 224
Bso31I GGTCTC 1 cut(s) 224
Bsp143I GATC 4 cut(s) 103, 355, 402, 433
BspACI CCGC 3 cut(s) 41, 303, 420
BspCNI CTCAG 1 cut(s) 214
BspDI ATCGAT 1 cut(s) 432
BspFNI CGCG 1 cut(s) 422
BspPI GGATC 1 cut(s) 428
BspTNI GGTCTC 1 cut(s) 224
BsrFI RCCGGY 1 cut(s) 316
BsrI ACTGG 1 cut(s) 437
BssAI RCCGGY 1 cut(s) 316
BssMI GATC 4 cut(s) 103, 355, 402, 433
Bst4CI ACNGT 2 cut(s) 235, 447
BstDEI CTNAG 2 cut(s) 222, 293
BstFNI CGCG 1 cut(s) 422
BstHHI GCGC 1 cut(s) 424
BstKTI GATC 4 cut(s) 106, 358, 405, 436
BstMAI GTCTC 1 cut(s) 224
BstMBI GATC 4 cut(s) 103, 355, 402, 433
BstNSI RCATGY 1 cut(s) 179
BstUI CGCG 1 cut(s) 422
BstXI CCANNNNNNTGG 1 cut(s) 96
Bsu15I ATCGAT 1 cut(s) 432
BsuTUI ATCGAT 1 cut(s) 432
BtsIMutI CAGTG 2 cut(s) 443, 444
CfoI GCGC 1 cut(s) 424
Cfr10I RCCGGY 1 cut(s) 316
ClaI ATCGAT 1 cut(s) 432
Csp6I GTAC 1 cut(s) 38
CviAII CATG 2 cut(s) 176, 202
CviJI RGCY 1 cut(s) 55
CviKI_1 RGCY 1 cut(s) 55
CviQI GTAC 1 cut(s) 38
DdeI CTNAG 2 cut(s) 222, 293
DpnI GATC 4 cut(s) 105, 357, 404, 435
DpnII GATC 4 cut(s) 103, 355, 402, 433
Eco31I GGTCTC 1 cut(s) 224
FaeI CATG 2 cut(s) 179, 205
FaiI YATR 9 cut(s) 11, 95, 97, 120, 137, 177, 203, 213, 278
FatI CATG 2 cut(s) 175, 201
FauNDI CATATG 1 cut(s) 95
FbaI TGATCA 1 cut(s) 402
FblI GTMKAC 1 cut(s) 237
Fnu4HI GCNGC 1 cut(s) 420
Fsp4HI GCNGC 1 cut(s) 420
GlaI GCGC 1 cut(s) 423
GluI GCNGC 1 cut(s) 420
HapII CCGG 2 cut(s) 70, 317
HhaI GCGC 1 cut(s) 424
Hin1II CATG 2 cut(s) 179, 205
Hin6I GCGC 1 cut(s) 422
HinP1I GCGC 1 cut(s) 422
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HindIII AAGCTT 1 cut(s) 53
HinfI GANTC 1 cut(s) 122
HpaII CCGG 2 cut(s) 70, 317
Hpy166II GTNNAC 1 cut(s) 238
Hpy188I TCNGA 1 cut(s) 223
Hpy8I GTNNAC 1 cut(s) 238
Hpy99I CGWCG 2 cut(s) 239, 242
HpyAV CCTTC 2 cut(s) 192, 265
HpyCH4III ACNGT 2 cut(s) 235, 447
HpyCH4IV ACGT 1 cut(s) 240
HpyCH4V TGCA 4 cut(s) 26, 50, 179, 260
HpyF3I CTNAG 2 cut(s) 222, 293
HpySE526I ACGT 1 cut(s) 240
Hsp92II CATG 2 cut(s) 179, 205
HspAI GCGC 1 cut(s) 422
Ksp22I TGATCA 1 cut(s) 402
Kzo9I GATC 4 cut(s) 103, 355, 402, 433
LmnI GCTCC 1 cut(s) 429
LpnPI CCDG 2 cut(s) 83, 330
LweI GCATC 1 cut(s) 35
MaeII ACGT 1 cut(s) 240
MaeIII GTNAC 1 cut(s) 349
MalI GATC 4 cut(s) 105, 357, 404, 435
MboI GATC 4 cut(s) 103, 355, 402, 433
MboII GAAGA 2 cut(s) 386, 409
MluCI AATT 5 cut(s) 15, 45, 60, 79, 337
MnlI CCTC 2 cut(s) 164, 277
MroXI GAANNNNTTC 1 cut(s) 63
MseI TTAA 1 cut(s) 341
MspA1I CMGCKG 1 cut(s) 305
MspI CCGG 2 cut(s) 70, 317
MvnI CGCG 1 cut(s) 422
NdeI CATATG 1 cut(s) 95
NdeII GATC 4 cut(s) 103, 355, 402, 433
NlaIII CATG 2 cut(s) 179, 205
NspI RCATGY 1 cut(s) 179
PdmI GAANNNNTTC 1 cut(s) 63
PfeI GAWTC 1 cut(s) 122
PkrI GCNGC 1 cut(s) 421
RsaI GTAC 1 cut(s) 39
RsaNI GTAC 1 cut(s) 38
SalI GTCGAC 1 cut(s) 236
SaqAI TTAA 1 cut(s) 341
SatI GCNGC 1 cut(s) 420
Sau3AI GATC 4 cut(s) 103, 355, 402, 433
SetI ASST 3 cut(s) 57, 184, 243
SfaNI GCATC 1 cut(s) 35
SgrDI CGTCGACG 1 cut(s) 236
Sse9I AATT 5 cut(s) 15, 45, 60, 79, 337
SsiI CCGC 3 cut(s) 41, 303, 420
SspI AATATT 1 cut(s) 148
TaaI ACNGT 2 cut(s) 235, 447
TaiI ACGT 1 cut(s) 243
TaqI TCGA 2 cut(s) 237, 432
TasI AATT 5 cut(s) 15, 45, 60, 79, 337
TauI GCSGC 1 cut(s) 422
TfiI GAWTC 1 cut(s) 122
Tru1I TTAA 1 cut(s) 341
Tru9I TTAA 1 cut(s) 341
TscAI CASTG 2 cut(s) 444, 450
TspDTI ATGAA 2 cut(s) 100, 218
TspRI CASTG 2 cut(s) 444, 450
XapI RAATTY 1 cut(s) 79
XceI RCATGY 1 cut(s) 179
XcmI CCANNNNNNNNNTGG 1 cut(s) 93
XmiI GTMKAC 1 cut(s) 237
XmnI GAANNNNTTC 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.