Rh5DG312500

(-)-alpha-pinene synthase-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Reverse (-)
40076054 .. 40078500
2447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG312500.1

Sequence Viewer

Length: 429 bp
ATGTCTATGGCTACAGATCCTTCCCCATCAAGTCAAGTACCACAAATTGCTAAGCCTGTAATTGTTCGCCAGACAGCGAATTTTCAACCAAGCATTTGGGGAGATCAGTTCATCAACTATGATTCTCAAGACATTTTTGAGAAAGAGAGAGAGCATGCACCTTCTAGCATTGATTGCTATATGAAGCAATATAGTGTTTCAGAGCAAGAGACAATTGATATTTTCAACAAACAAATTGTGGAATCATGGAAGGATATAAACGAGGAGTTTCTTAAACCAACCGCCGTGCCAATATCGGTTCTTATGCGCGTTCTCAATTTAACAAGAGTTGCGGATCTCCTTTATAAGGGAGAAGATGGATTCACACGGGTTGGGAAGATGACCAAAGATAGTGTTGCTGCAGTTATTATCGATCCAGTGCCACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

142

Amino Acids

16.07

Weight (kDa)

4.73

Isoelectric Point (pI)

54.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth_C PF03936 46 - 85 8.4e-09 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 47 - 85 1.1e-07 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 345
AccII CGCG 1 cut(s) 309
AciI CCGC 2 cut(s) 282, 332
AclWI GGATC 3 cut(s) 11, 342, 407
AcsI RAATTY 1 cut(s) 79
AfaI GTAC 1 cut(s) 39
AfiI CCNNNNNNNGG 1 cut(s) 346
AgsI TTSAA 2 cut(s) 86, 226
Alw26I GTCTC 1 cut(s) 203
AlwI GGATC 3 cut(s) 11, 342, 407
ApeKI GCWGC 1 cut(s) 398
ApoI RAATTY 1 cut(s) 79
AspLEI GCGC 1 cut(s) 309
BbvI GCAGC 1 cut(s) 385
BccI CCATC 2 cut(s) 34, 350
BceAI ACGGC 1 cut(s) 269
BcoDI GTCTC 1 cut(s) 203
BfaI CTAG 1 cut(s) 165
BfmI CTRYAG 2 cut(s) 12, 399
BisI GCNGC 1 cut(s) 399
BlpI GCTNAGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 400
Bpu1102I GCTNAGC 1 cut(s) 51
BpuEI CTTGAG 1 cut(s) 111
Bsa29I ATCGAT 1 cut(s) 411
Bsc4I CCNNNNNNNGG 1 cut(s) 346
Bse1I ACTGG 1 cut(s) 416
BseCI ATCGAT 1 cut(s) 411
BseLI CCNNNNNNNGG 1 cut(s) 346
BseNI ACTGG 1 cut(s) 416
BseRI GAGGAG 1 cut(s) 278
BseXI GCAGC 1 cut(s) 385
Bsh1236I CGCG 1 cut(s) 309
BshVI ATCGAT 1 cut(s) 411
BslI CCNNNNNNNGG 1 cut(s) 346
BsmAI GTCTC 1 cut(s) 203
Bsp143I GATC 4 cut(s) 16, 103, 334, 412
Bsp1720I GCTNAGC 1 cut(s) 51
BspACI CCGC 2 cut(s) 282, 332
BspDI ATCGAT 1 cut(s) 411
BspFNI CGCG 1 cut(s) 309
BspMAI CTGCAG 1 cut(s) 403
BspPI GGATC 3 cut(s) 11, 342, 407
BsrI ACTGG 1 cut(s) 416
BssMI GATC 4 cut(s) 16, 103, 334, 412
Bst4CI ACNGT 1 cut(s) 426
BstAPI GCANNNNNTGC 1 cut(s) 174
BstC8I GCNNGC 1 cut(s) 156
BstDEI CTNAG 1 cut(s) 51
BstENI CCTNNNNNAGG 1 cut(s) 344
BstFNI CGCG 1 cut(s) 309
BstHHI GCGC 1 cut(s) 309
BstKTI GATC 4 cut(s) 19, 106, 337, 415
BstMAI GTCTC 1 cut(s) 203
BstMBI GATC 4 cut(s) 16, 103, 334, 412
BstMWI GCNNNNNNNGC 1 cut(s) 174
BstNSI RCATGY 1 cut(s) 158
BstSFI CTRYAG 2 cut(s) 12, 399
BstUI CGCG 1 cut(s) 309
BstV1I GCAGC 1 cut(s) 385
BstX2I RGATCY 2 cut(s) 16, 334
BstXI CCANNNNNNTGG 1 cut(s) 96
BstYI RGATCY 2 cut(s) 16, 334
Bsu15I ATCGAT 1 cut(s) 411
BsuTUI ATCGAT 1 cut(s) 411
BtsIMutI CAGTG 2 cut(s) 422, 423
Cac8I GCNNGC 1 cut(s) 156
CfoI GCGC 1 cut(s) 309
ClaI ATCGAT 1 cut(s) 411
Csp6I GTAC 1 cut(s) 38
CviAII CATG 2 cut(s) 155, 246
CviJI RGCY 2 cut(s) 11, 55
CviKI_1 RGCY 2 cut(s) 11, 55
CviQI GTAC 1 cut(s) 38
DdeI CTNAG 1 cut(s) 51
DpnI GATC 4 cut(s) 18, 105, 336, 414
DpnII GATC 4 cut(s) 16, 103, 334, 412
EcoNI CCTNNNNNAGG 1 cut(s) 344
FaeI CATG 2 cut(s) 158, 249
FatI CATG 2 cut(s) 154, 245
Fnu4HI GCNGC 1 cut(s) 399
Fsp4HI GCNGC 1 cut(s) 399
FspBI CTAG 1 cut(s) 165
GlaI GCGC 1 cut(s) 308
GluI GCNGC 1 cut(s) 399
HhaI GCGC 1 cut(s) 309
Hin1II CATG 2 cut(s) 158, 249
Hin6I GCGC 1 cut(s) 307
HinP1I GCGC 1 cut(s) 307
HinfI GANTC 3 cut(s) 122, 242, 360
Hpy188I TCNGA 1 cut(s) 202
Hpy188III TCNNGA 1 cut(s) 128
HpyAV CCTTC 3 cut(s) 30, 171, 244
HpyCH4III ACNGT 1 cut(s) 426
HpyCH4V TGCA 2 cut(s) 158, 401
HpyF10VI GCNNNNNNNGC 1 cut(s) 174
HpyF3I CTNAG 1 cut(s) 51
Hsp92II CATG 2 cut(s) 158, 249
HspAI GCGC 1 cut(s) 307
Kzo9I GATC 4 cut(s) 16, 103, 334, 412
LpnPI CCDG 2 cut(s) 69, 83
Lsp1109I GCAGC 1 cut(s) 385
MaeI CTAG 1 cut(s) 165
MalI GATC 4 cut(s) 18, 105, 336, 414
MboI GATC 4 cut(s) 16, 103, 334, 412
MboII GAAGA 2 cut(s) 365, 388
MfeI CAATTG 1 cut(s) 213
MflI RGATCY 2 cut(s) 16, 334
MluCI AATT 6 cut(s) 45, 60, 79, 213, 234, 316
MnlI CCTC 1 cut(s) 256
MseI TTAA 2 cut(s) 273, 320
MunI CAATTG 1 cut(s) 213
MvnI CGCG 1 cut(s) 309
MwoI GCNNNNNNNGC 1 cut(s) 174
NdeII GATC 4 cut(s) 16, 103, 334, 412
NlaIII CATG 2 cut(s) 158, 249
NspI RCATGY 1 cut(s) 158
PaeI GCATGC 1 cut(s) 158
PfeI GAWTC 3 cut(s) 122, 242, 360
PkrI GCNGC 1 cut(s) 400
PsiI TTATAA 1 cut(s) 345
PstI CTGCAG 1 cut(s) 403
PsuI RGATCY 2 cut(s) 16, 334
RsaI GTAC 1 cut(s) 39
RsaNI GTAC 1 cut(s) 38
SaqAI TTAA 2 cut(s) 273, 320
SatI GCNGC 1 cut(s) 399
Sau3AI GATC 4 cut(s) 16, 103, 334, 412
SetI ASST 1 cut(s) 163
SfcI CTRYAG 2 cut(s) 12, 399
SmlI CTYRAG 1 cut(s) 126
SmoI CTYRAG 1 cut(s) 126
SphI GCATGC 1 cut(s) 158
Sse9I AATT 6 cut(s) 45, 60, 79, 213, 234, 316
SsiI CCGC 2 cut(s) 282, 332
SspMI CTAG 1 cut(s) 165
TaaI ACNGT 1 cut(s) 426
TaqI TCGA 1 cut(s) 411
TasI AATT 6 cut(s) 45, 60, 79, 213, 234, 316
TfiI GAWTC 3 cut(s) 122, 242, 360
Tru1I TTAA 2 cut(s) 273, 320
Tru9I TTAA 2 cut(s) 273, 320
TscAI CASTG 2 cut(s) 423, 429
TseI GCWGC 1 cut(s) 398
TspDTI ATGAA 2 cut(s) 100, 197
TspRI CASTG 2 cut(s) 423, 429
XagI CCTNNNNNAGG 1 cut(s) 344
XapI RAATTY 1 cut(s) 79
XceI RCATGY 1 cut(s) 158
XspI CTAG 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.