MD12G1163200.v1.1

synthase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Reverse (-)
24461926 .. 24462177
252 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1163200.v1.1.491

Sequence Viewer

Length: 252 bp
ATGGGGCCACATGGGGCCACAGAAGAAGAAGCGATAATCAAACTTCAAAGACAAGTGAATAATGCATGGAAGGACAAAAACGAAGCGTTCCTCCACCCTACCGCTATCCCCATGCCCCTGCTAATCCGCATTCTCAATTTAACTCGGGTCATTGATGTTGTGTACAAGTGTGAAGATGCCTACGCCAATAACCCTGGGGGTGTGCTTATAAGACTAAAATATCATCTTACTGTCATGGGCGGATCCATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

84

Amino Acids

9.28

Weight (kDa)

7.92

Isoelectric Point (pI)

33.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 209
AciI CCGC 3 cut(s) 102, 127, 240
AclWI GGATC 2 cut(s) 237, 250
AfaI GTAC 1 cut(s) 164
AgsI TTSAA 1 cut(s) 47
AjnI CCWGG 1 cut(s) 193
AlwI GGATC 2 cut(s) 237, 250
Ama87I CYCGRG 1 cut(s) 144
AoxI GGCC 2 cut(s) 5, 15
AspS9I GGNCC 2 cut(s) 5, 15
AvaI CYCGRG 1 cut(s) 144
BamHI GGATCC 1 cut(s) 242
BciT130I CCWGG 1 cut(s) 195
Bme1390I CCNGG 1 cut(s) 195
BmeT110I CYCGRG 1 cut(s) 144
BmgT120I GGNCC 2 cut(s) 5, 15
BmiI GGNNCC 3 cut(s) 6, 16, 244
BmrFI CCNGG 1 cut(s) 195
BmsI GCATC 1 cut(s) 166
BsaJI CCNNGG 2 cut(s) 193, 194
BseBI CCWGG 1 cut(s) 195
BseDI CCNNGG 2 cut(s) 193, 194
BshFI GGCC 2 cut(s) 7, 17
BsiHKCI CYCGRG 1 cut(s) 144
BsmI GAATGC 1 cut(s) 129
BsnI GGCC 2 cut(s) 7, 17
BsoBI CYCGRG 1 cut(s) 144
Bsp1407I TGTACA 1 cut(s) 162
Bsp143I GATC 1 cut(s) 242
BspACI CCGC 3 cut(s) 102, 127, 240
BspANI GGCC 2 cut(s) 7, 17
BspLI GGNNCC 3 cut(s) 6, 16, 244
BspPI GGATC 2 cut(s) 237, 250
BsrGI TGTACA 1 cut(s) 162
BssECI CCNNGG 2 cut(s) 193, 194
BssMI GATC 1 cut(s) 242
Bst2UI CCWGG 1 cut(s) 195
Bst4CI ACNGT 1 cut(s) 232
BstAUI TGTACA 1 cut(s) 162
BstKTI GATC 1 cut(s) 245
BstMBI GATC 1 cut(s) 242
BstNI CCWGG 1 cut(s) 195
BstSCI CCNGG 1 cut(s) 193
BstX2I RGATCY 1 cut(s) 242
BstYI RGATCY 1 cut(s) 242
BsuRI GGCC 2 cut(s) 7, 17
Cfr13I GGNCC 2 cut(s) 5, 15
Csp6I GTAC 1 cut(s) 163
CviAII CATG 4 cut(s) 11, 66, 112, 235
CviJI RGCY 2 cut(s) 7, 17
CviKI_1 RGCY 2 cut(s) 7, 17
CviQI GTAC 1 cut(s) 163
DpnI GATC 1 cut(s) 244
DpnII GATC 1 cut(s) 242
Eco88I CYCGRG 1 cut(s) 144
EcoRII CCWGG 1 cut(s) 193
EcoT22I ATGCAT 1 cut(s) 67
FaeI CATG 4 cut(s) 14, 69, 115, 238
FaiI YATR 5 cut(s) 12, 67, 113, 209, 236
FatI CATG 4 cut(s) 10, 65, 111, 234
HaeIII GGCC 2 cut(s) 7, 17
Hin1II CATG 4 cut(s) 14, 69, 115, 238
Hpy166II GTNNAC 1 cut(s) 163
Hpy8I GTNNAC 1 cut(s) 163
HpyAV CCTTC 1 cut(s) 64
HpyCH4III ACNGT 1 cut(s) 232
HpyCH4V TGCA 1 cut(s) 65
Hsp92II CATG 4 cut(s) 14, 69, 115, 238
Kzo9I GATC 1 cut(s) 242
LpnPI CCDG 3 cut(s) 131, 180, 207
LweI GCATC 1 cut(s) 166
MalI GATC 1 cut(s) 244
MboI GATC 1 cut(s) 242
MboII GAAGA 3 cut(s) 35, 38, 185
MflI RGATCY 1 cut(s) 242
MluCI AATT 1 cut(s) 136
MnlI CCTC 1 cut(s) 101
Mph1103I ATGCAT 1 cut(s) 67
MseI TTAA 1 cut(s) 140
MspR9I CCNGG 1 cut(s) 195
Mva1269I GAATGC 1 cut(s) 129
MvaI CCWGG 1 cut(s) 195
NdeII GATC 1 cut(s) 242
NlaIII CATG 4 cut(s) 14, 69, 115, 238
NlaIV GGNNCC 3 cut(s) 6, 16, 244
NsiI ATGCAT 1 cut(s) 67
PasI CCCWGGG 1 cut(s) 194
PctI GAATGC 1 cut(s) 129
PsiI TTATAA 1 cut(s) 209
Psp6I CCWGG 1 cut(s) 193
PspGI CCWGG 1 cut(s) 193
PspN4I GGNNCC 3 cut(s) 6, 16, 244
PspPI GGNCC 2 cut(s) 5, 15
PsuI RGATCY 1 cut(s) 242
RsaI GTAC 1 cut(s) 164
RsaNI GTAC 1 cut(s) 163
SaqAI TTAA 1 cut(s) 140
Sau3AI GATC 1 cut(s) 242
Sau96I GGNCC 2 cut(s) 5, 15
ScrFI CCNGG 1 cut(s) 195
SfaNI GCATC 1 cut(s) 166
Sse9I AATT 1 cut(s) 136
SsiI CCGC 3 cut(s) 102, 127, 240
StyD4I CCNGG 1 cut(s) 193
TaaI ACNGT 1 cut(s) 232
TasI AATT 1 cut(s) 136
TatI WGTACW 1 cut(s) 162
Tru1I TTAA 1 cut(s) 140
Tru9I TTAA 1 cut(s) 140
Zsp2I ATGCAT 1 cut(s) 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.