RLG00000033702

(-)-alpha-pinene synthase-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
31140708 .. 31141343
636 bp
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UTR
Exon/CDS
Intron
RLM00000033702

Sequence Viewer

Length: 423 bp
ATGGAGGAGTATATGCCTGTTAGAGTAGCTTCTGTTAGTACTTGTATGACTGTAGTTCTATCTTTACTTGGAATGGGCGATACCGTCACCAAGGAAACATTTGATTGGGTTTTGAAGTACCCAAAAATTGTTAGGGCTTCGAGCCTCATTTTTAGGCTCATGGATAACATTGGAGATTTGGAGTGTGAGAAACAGAAAGGGGATGTTGCTTCTAGTATTGATTGCTACATGAAGCAATATGGGGAAATAAATGAGGATTTACTTCGACCAACTGCTTTGCCAATGTTTGTGCTCATGCGCGTTCTTGATTTCCCAAGAGATGTAGATCTGGTTTACAAAGGAGAAGATGGCTATGCACATGTTGGGAAAGTAGTAAAACATGGTGTCGCTGCACTTTTTGGTGATCCATTGCCACTCGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

141

Amino Acids

15.7

Weight (kDa)

4.91

Isoelectric Point (pI)

37.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth_C PF03936 1 - 85 8.5e-26 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 1 - 81 5e-20 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 300
AclWI GGATC 1 cut(s) 398
AfaI GTAC 2 cut(s) 40, 119
AflIII ACRYGT 1 cut(s) 358
AgsI TTSAA 1 cut(s) 115
AluBI AGCT 1 cut(s) 29
AluI AGCT 1 cut(s) 29
Alw21I GWGCWC 1 cut(s) 294
AlwI GGATC 1 cut(s) 398
ApeKI GCWGC 1 cut(s) 389
AspLEI GCGC 1 cut(s) 300
AsuHPI GGTGA 2 cut(s) 79, 413
Bbv12I GWGCWC 1 cut(s) 294
BbvI GCAGC 1 cut(s) 376
BccI CCATC 1 cut(s) 341
BfaI CTAG 1 cut(s) 213
BfmI CTRYAG 1 cut(s) 51
BglII AGATCT 1 cut(s) 325
BisI GCNGC 1 cut(s) 390
BlsI GCNGC 1 cut(s) 391
BmcAI AGTACT 1 cut(s) 40
BsaBI GATNNNNATC 1 cut(s) 324
BsaJI CCNNGG 1 cut(s) 90
Bse3DI GCAATG 1 cut(s) 407
Bse8I GATNNNNATC 1 cut(s) 324
BseDI CCNNGG 1 cut(s) 90
BseGI GGATG 1 cut(s) 208
BseJI GATNNNNATC 1 cut(s) 324
BseMI GCAATG 1 cut(s) 407
BseRI GAGGAG 1 cut(s) 20
BseXI GCAGC 1 cut(s) 376
BsgI GTGCAG 1 cut(s) 375
Bsh1236I CGCG 1 cut(s) 300
BsiHKAI GWGCWC 1 cut(s) 294
Bsp1286I GDGCHC 1 cut(s) 294
Bsp143I GATC 2 cut(s) 325, 403
BspFNI CGCG 1 cut(s) 300
BspPI GGATC 1 cut(s) 398
BsrDI GCAATG 1 cut(s) 407
BssECI CCNNGG 1 cut(s) 90
BssMI GATC 2 cut(s) 325, 403
BssT1I CCWWGG 1 cut(s) 90
Bst4CI ACNGT 2 cut(s) 52, 85
BstF5I GGATG 1 cut(s) 208
BstFNI CGCG 1 cut(s) 300
BstHHI GCGC 1 cut(s) 300
BstKTI GATC 2 cut(s) 328, 406
BstMBI GATC 2 cut(s) 325, 403
BstNSI RCATGY 1 cut(s) 362
BstSFI CTRYAG 1 cut(s) 51
BstUI CGCG 1 cut(s) 300
BstV1I GCAGC 1 cut(s) 376
BstX2I RGATCY 1 cut(s) 325
BstYI RGATCY 1 cut(s) 325
BtsCI GGATG 1 cut(s) 208
CfoI GCGC 1 cut(s) 300
Csp6I GTAC 2 cut(s) 39, 118
CviAII CATG 5 cut(s) 160, 229, 295, 359, 380
CviJI RGCY 5 cut(s) 29, 137, 144, 157, 351
CviKI_1 RGCY 5 cut(s) 29, 137, 144, 157, 351
CviQI GTAC 2 cut(s) 39, 118
DpnI GATC 2 cut(s) 327, 405
DpnII GATC 2 cut(s) 325, 403
Eco130I CCWWGG 1 cut(s) 90
EcoT14I CCWWGG 1 cut(s) 90
ErhI CCWWGG 1 cut(s) 90
FaeI CATG 5 cut(s) 163, 232, 298, 362, 383
FatI CATG 5 cut(s) 159, 228, 294, 358, 379
Fnu4HI GCNGC 1 cut(s) 390
FokI GGATG 1 cut(s) 215
Fsp4HI GCNGC 1 cut(s) 390
FspBI CTAG 1 cut(s) 213
GlaI GCGC 1 cut(s) 299
GluI GCNGC 1 cut(s) 390
HhaI GCGC 1 cut(s) 300
Hin1II CATG 5 cut(s) 163, 232, 298, 362, 383
Hin6I GCGC 1 cut(s) 298
HinP1I GCGC 1 cut(s) 298
HphI GGTGA 2 cut(s) 79, 413
Hpy166II GTNNAC 1 cut(s) 334
Hpy188III TCNNGA 1 cut(s) 305
Hpy8I GTNNAC 1 cut(s) 334
HpyCH4III ACNGT 2 cut(s) 52, 85
HpyCH4V TGCA 2 cut(s) 356, 392
Hsp92II CATG 5 cut(s) 163, 232, 298, 362, 383
HspAI GCGC 1 cut(s) 298
Kzo9I GATC 2 cut(s) 325, 403
LpnPI CCDG 2 cut(s) 30, 314
Lsp1109I GCAGC 1 cut(s) 376
MaeI CTAG 1 cut(s) 213
MaeIII GTNAC 1 cut(s) 85
MalI GATC 2 cut(s) 327, 405
MboI GATC 2 cut(s) 325, 403
MboII GAAGA 1 cut(s) 356
MflI RGATCY 1 cut(s) 325
MhlI GDGCHC 1 cut(s) 294
MluCI AATT 1 cut(s) 126
MnlI CCTC 2 cut(s) 155, 247
MslI CAYNNNNRTG 1 cut(s) 418
MvnI CGCG 1 cut(s) 300
NdeII GATC 2 cut(s) 325, 403
NlaIII CATG 5 cut(s) 163, 232, 298, 362, 383
NmuCI GTSAC 1 cut(s) 85
NspI RCATGY 1 cut(s) 362
PciI ACATGT 1 cut(s) 358
PkrI GCNGC 1 cut(s) 391
PscI ACATGT 1 cut(s) 358
PsuI RGATCY 1 cut(s) 325
RsaI GTAC 2 cut(s) 40, 119
RsaNI GTAC 2 cut(s) 39, 118
RseI CAYNNNNRTG 1 cut(s) 418
SatI GCNGC 1 cut(s) 390
Sau3AI GATC 2 cut(s) 325, 403
ScaI AGTACT 1 cut(s) 40
SduI GDGCHC 1 cut(s) 294
SetI ASST 1 cut(s) 31
SfcI CTRYAG 1 cut(s) 51
SmiMI CAYNNNNRTG 1 cut(s) 418
Sse9I AATT 1 cut(s) 126
SspMI CTAG 1 cut(s) 213
StyI CCWWGG 1 cut(s) 90
TaaI ACNGT 2 cut(s) 52, 85
TaqI TCGA 3 cut(s) 140, 265, 417
TasI AATT 1 cut(s) 126
TatI WGTACW 1 cut(s) 38
TseFI GTSAC 1 cut(s) 85
TseI GCWGC 1 cut(s) 389
Tsp45I GTSAC 1 cut(s) 85
TspDTI ATGAA 1 cut(s) 245
XceI RCATGY 1 cut(s) 362
XspI CTAG 1 cut(s) 213
ZrmI AGTACT 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.