RchiOBHm_Chr6g0274881

synthase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
36474012 .. 36474527
516 bp
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UTR
Exon/CDS
Intron
PRQ24662

Sequence Viewer

Length: 396 bp
ATGAATCAGCTTCCAGAAATACTGCAACTCTGTTACAAGGCACTTATAGAGTTTTTTGAAGAAATTGAAGATGAAATGGCAAAGGAAGGAAGATCATACCGAGTTCATTATGCAAAAGAGACGATGAAAGCTCTATGCCGAGGTTACCTAAAAGAAGCTCAATGTTTCAATCAAGACTACATCCCAAGTGTGGAGGAGCATATGGAACTTGCACTTGTAACCTGCACATATCCAATGCTTCTAACTCTAGCTTTAGTTGGCATGGGCGGCAATGTAACAAAGGAGACCTTTGAGTGGATGTCCCAGGGGCCTAAGATTCTTACAGCTTCAGCAACCATTTCGAGGTGCATGGACGACATTGTTGGACACAAGGTAACAAAAATCATTGTTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

131

Amino Acids

14.95

Weight (kDa)

5.19

Isoelectric Point (pI)

49.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth_C PF03936 1 - 124 2.9e-41 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 8 - 124 1.2e-29 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 230
AciI CCGC 1 cut(s) 267
AcuI CTGAAG 1 cut(s) 312
AfiI CCNNNNNNNGG 3 cut(s) 190, 294, 342
AgsI TTSAA 3 cut(s) 59, 68, 169
AjnI CCWGG 1 cut(s) 303
AluBI AGCT 5 cut(s) 10, 131, 158, 251, 326
AluI AGCT 5 cut(s) 10, 131, 158, 251, 326
Alw26I GTCTC 2 cut(s) 113, 278
AoxI GGCC 1 cut(s) 308
AspS9I GGNCC 1 cut(s) 308
BcgI CGANNNNNNTGC 2 cut(s) 321, 355
BciT130I CCWGG 1 cut(s) 305
BcoDI GTCTC 2 cut(s) 113, 278
BfaI CTAG 1 cut(s) 248
BfuAI ACCTGC 1 cut(s) 230
BisI GCNGC 1 cut(s) 268
BlsI GCNGC 1 cut(s) 269
Bme1390I CCNGG 1 cut(s) 305
BmgT120I GGNCC 1 cut(s) 308
BmiI GGNNCC 1 cut(s) 309
BmrFI CCNGG 1 cut(s) 305
BsaI GGTCTC 1 cut(s) 278
BsaJI CCNNGG 3 cut(s) 139, 303, 304
Bsc4I CCNNNNNNNGG 3 cut(s) 190, 294, 342
Bse3DI GCAATG 1 cut(s) 277
BseBI CCWGG 1 cut(s) 305
BseDI CCNNGG 3 cut(s) 139, 303, 304
BseGI GGATG 2 cut(s) 180, 303
BseLI CCNNNNNNNGG 3 cut(s) 190, 294, 342
BseMI GCAATG 1 cut(s) 277
BseRI GAGGAG 1 cut(s) 209
BsgI GTGCAG 1 cut(s) 208
BshFI GGCC 1 cut(s) 310
BslFI GGGAC 1 cut(s) 286
BslI CCNNNNNNNGG 3 cut(s) 190, 294, 342
BsmAI GTCTC 2 cut(s) 113, 278
BsmBI CGTCTC 1 cut(s) 113
BsmFI GGGAC 1 cut(s) 286
BsnI GGCC 1 cut(s) 310
Bso31I GGTCTC 1 cut(s) 278
Bsp143I GATC 1 cut(s) 92
BspACI CCGC 1 cut(s) 267
BspANI GGCC 1 cut(s) 310
BspLI GGNNCC 1 cut(s) 309
BspMI ACCTGC 1 cut(s) 230
BspTNI GGTCTC 1 cut(s) 278
BsrDI GCAATG 1 cut(s) 277
BssECI CCNNGG 3 cut(s) 139, 303, 304
BssMI GATC 1 cut(s) 92
Bst2UI CCWGG 1 cut(s) 305
BstDEI CTNAG 1 cut(s) 312
BstEII GGTNACC 1 cut(s) 143
BstF5I GGATG 2 cut(s) 180, 303
BstKTI GATC 1 cut(s) 95
BstMAI GTCTC 2 cut(s) 113, 278
BstMBI GATC 1 cut(s) 92
BstMWI GCNNNNNNNGC 1 cut(s) 267
BstNI CCWGG 1 cut(s) 305
BstPI GGTNACC 1 cut(s) 143
BstSCI CCNGG 1 cut(s) 303
BsuRI GGCC 1 cut(s) 310
BtsCI GGATG 2 cut(s) 180, 303
BveI ACCTGC 1 cut(s) 230
Cfr13I GGNCC 1 cut(s) 308
CviAII CATG 2 cut(s) 262, 349
CviJI RGCY 6 cut(s) 10, 131, 158, 251, 310, 326
CviKI_1 RGCY 6 cut(s) 10, 131, 158, 251, 310, 326
DdeI CTNAG 1 cut(s) 312
DpnI GATC 1 cut(s) 94
DpnII GATC 1 cut(s) 92
Eco31I GGTCTC 1 cut(s) 278
Eco57I CTGAAG 1 cut(s) 312
Eco91I GGTNACC 1 cut(s) 143
EcoO109I RGGNCCY 1 cut(s) 308
EcoO65I GGTNACC 1 cut(s) 143
EcoRII CCWGG 1 cut(s) 303
Esp3I CGTCTC 1 cut(s) 113
FaeI CATG 2 cut(s) 265, 352
FaiI YATR 9 cut(s) 47, 97, 111, 136, 201, 203, 229, 263, 350
FalI AAGNNNNNCTT 2 cut(s) 272, 304
FaqI GGGAC 1 cut(s) 286
FatI CATG 2 cut(s) 261, 348
FauNDI CATATG 1 cut(s) 201
Fnu4HI GCNGC 1 cut(s) 268
FokI GGATG 2 cut(s) 167, 310
Fsp4HI GCNGC 1 cut(s) 268
FspBI CTAG 1 cut(s) 248
GluI GCNGC 1 cut(s) 268
HaeIII GGCC 1 cut(s) 310
Hin1II CATG 2 cut(s) 265, 352
HinfI GANTC 2 cut(s) 4, 316
Hpy188III TCNNGA 2 cut(s) 14, 173
HpyAV CCTTC 1 cut(s) 80
HpyCH4V TGCA 5 cut(s) 25, 113, 212, 225, 348
HpyF10VI GCNNNNNNNGC 1 cut(s) 267
HpyF3I CTNAG 1 cut(s) 312
Hsp92II CATG 2 cut(s) 265, 352
Kzo9I GATC 1 cut(s) 92
LmnI GCTCC 1 cut(s) 196
LpnPI CCDG 4 cut(s) 27, 235, 290, 317
MaeI CTAG 1 cut(s) 248
MaeIII GTNAC 5 cut(s) 32, 143, 217, 274, 373
MalI GATC 1 cut(s) 94
MboI GATC 1 cut(s) 92
MboII GAAGA 3 cut(s) 71, 80, 102
MluCI AATT 2 cut(s) 63, 391
MmeI TCCRAC 1 cut(s) 343
MnlI CCTC 3 cut(s) 134, 187, 336
MseI TTAA 1 cut(s) 390
MspR9I CCNGG 1 cut(s) 305
MvaI CCWGG 1 cut(s) 305
MwoI GCNNNNNNNGC 1 cut(s) 267
NdeI CATATG 1 cut(s) 201
NdeII GATC 1 cut(s) 92
NlaIII CATG 2 cut(s) 265, 352
NlaIV GGNNCC 1 cut(s) 309
NmeAIII GCCGAG 1 cut(s) 164
PasI CCCWGGG 1 cut(s) 304
PfeI GAWTC 2 cut(s) 4, 316
PkrI GCNGC 1 cut(s) 269
Psp6I CCWGG 1 cut(s) 303
PspEI GGTNACC 1 cut(s) 143
PspGI CCWGG 1 cut(s) 303
PspN4I GGNNCC 1 cut(s) 309
PspPI GGNCC 1 cut(s) 308
SaqAI TTAA 1 cut(s) 390
SatI GCNGC 1 cut(s) 268
Sau3AI GATC 1 cut(s) 92
Sau96I GGNCC 1 cut(s) 308
ScrFI CCNGG 1 cut(s) 305
Sse9I AATT 2 cut(s) 63, 391
SsiI CCGC 1 cut(s) 267
SspMI CTAG 1 cut(s) 248
StyD4I CCNGG 1 cut(s) 303
TaqI TCGA 1 cut(s) 341
TasI AATT 2 cut(s) 63, 391
TauI GCSGC 1 cut(s) 270
TfiI GAWTC 2 cut(s) 4, 316
Tru1I TTAA 1 cut(s) 390
Tru9I TTAA 1 cut(s) 390
TspDTI ATGAA 4 cut(s) 17, 87, 95, 140
XspI CTAG 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.