Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000979

Physical Location & Seq

Genomic Coordinates Forward (+)

63464274 .. 63464718

Gene Structure 445 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00127900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGATCCGAAAATTCTTAAGAGCTTCGAATACCATATTTAGGCTTATGGATGACATTGCCGGGCACAAGTTTGAGAAAGAGAGGGGGCATGTTGCTTCTAGTATTGATTGCTACATGAATGAATATGGGGTCTCAGAGCAAGAGACAATTGATGTCTTTAACAAACGAATTGTGGATTCGTGGAAGGATATAAACGAAGAGTTTCTGAGGCCCACTGCGGTGCCAATTCTTGTGCTTAATCGTGTTCTTAACCTAACTCGAGTGGTTGATCTCATTTACAAAAGGGGAGATGCCTTCACGCATGTTGGAAAACTGATGAAAGACACTATTGCTTCACTGTTTATTGATCCAGTGCCACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00909 map00909

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

120

Amino Acids

13.87

Weight (kDa)

6.83

Isoelectric Point (pI)

35.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Terpene_syn_C_2	PF19086	2 - 63	7.8e-19	Terpene synthase family 2, C-terminal metal binding
Terpene_synth_C	PF03936	4 - 63	1.1e-20	Terpene synthase family, metal binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000979)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22161 FvH4_3g32081 FvH4_3g32180 FvH4_5g06450 FvH4_6g19300
malus_domestica	MD12G1162800.v1.1 MD12G1163200.v1.1 MD12G1163600.v1.1
prunus_persica	Prupe.4G194000_v2.0.a1 Prupe.4G194700_v2.0.a1 Prupe.4G198800_v2.0.a1
pyrus_communis	pycom07g03220
rosa_chinensis	RchiOBHm_Chr0c17g0499941 RchiOBHm_Chr1g0326031 RchiOBHm_Chr1g0326301 RchiOBHm_Chr4g0406361 RchiOBHm_Chr6g0274881
rosa_laevigata	RLG00000008723 RLG00000014166 RLG00000033702
rosa_multiflora	Rmu_sc0000149.1_g000030 Rmu_sc0001353.1_g000008 Rmu_sc0006272.1_g000013 Rmu_sc0008056.1_g000001 Rmu_sc0011910.1_g000003 Rmu_sc0019563.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044360 Rroxscaffold_2G00123050 Rroxscaffold_2G00127900 Rroxscaffold_2G00128770 Rroxscaffold_3G00225480 Rroxscaffold_3G00235290 Rroxscaffold_4G00317180 Rroxscaffold_4G00320650 Rroxscaffold_4G00320660 Rroxscaffold_6G00393300
rosa_samantha	Rh1BG062100 Rh1CG074300 Rh1DG080600 Rh1DG081600 Rh3BG331000 Rh3CG216000 Rh3CG216300 Rh3CG216700 Rh3DG216700 Rh3DG328000 Rh3DG328300 Rh4CG145600 Rh5CG282500 Rh5DG271000 Rh5DG275500 Rh5DG312500 Rh5DG416000 Rh5DG454000 Rh6BG141200 Rh6BG178000 Rh6BG178100 Rh6BG178200 Rh6CG137600 Rh6CG174100 Rh6CG205100 Rh6CG272400 Rh6DG195900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	220
AciI	CCGC	1 cut(s)	218
AclWI	GGATC	1 cut(s)	341
AcsI	RAATTY	1 cut(s)	11
AfiI	CCNNNNNNNGG	1 cut(s)	39
AflII	CTTAAG	1 cut(s)	16
AleI	CACNNNNGTG	1 cut(s)	218
AluBI	AGCT	1 cut(s)	23
AluI	AGCT	1 cut(s)	23
Alw26I	GTCTC	2 cut(s)	136, 137
AlwI	GGATC	1 cut(s)	341
Ama87I	CYCGRG	1 cut(s)	258
AoxI	GGCC	1 cut(s)	209
ApoI	RAATTY	1 cut(s)	11
Asp700I	GAANNNNTTC	1 cut(s)	201
AspS9I	GGNCC	1 cut(s)	210
AsuC2I	CCSGG	1 cut(s)	61
AsuII	TTCGAA	1 cut(s)	26
AvaI	CYCGRG	1 cut(s)	258
BaeGI	GKGCMC	1 cut(s)	66
BanI	GGYRCC	1 cut(s)	220
BcnI	CCSGG	1 cut(s)	61
BcoDI	GTCTC	2 cut(s)	136, 137
BfaI	CTAG	1 cut(s)	99
BfrI	CTTAAG	1 cut(s)	16
Bme1390I	CCNGG	1 cut(s)	61
BmeT110I	CYCGRG	1 cut(s)	258
BmgT120I	GGNCC	1 cut(s)	210
BmiI	GGNNCC	1 cut(s)	222
BmrFI	CCNGG	1 cut(s)	61
BmsI	GCATC	1 cut(s)	280
Bpu14I	TTCGAA	1 cut(s)	26
BpuMI	CCSGG	1 cut(s)	61
BsaI	GGTCTC	1 cut(s)	136
Bsc4I	CCNNNNNNNGG	1 cut(s)	39
Bse1I	ACTGG	1 cut(s)	350
Bse3DI	GCAATG	1 cut(s)	54
BseGI	GGATG	1 cut(s)	55
BseLI	CCNNNNNNNGG	1 cut(s)	39
BseMI	GCAATG	1 cut(s)	54
BseMII	CTCAG	2 cut(s)	147, 197
BseNI	ACTGG	1 cut(s)	350
BseSI	GKGCMC	1 cut(s)	66
BshFI	GGCC	1 cut(s)	211
BshNI	GGYRCC	1 cut(s)	220
BsiHKCI	CYCGRG	1 cut(s)	258
BsiSI	CCGG	1 cut(s)	60
BslI	CCNNNNNNNGG	1 cut(s)	39
BsmAI	GTCTC	2 cut(s)	136, 137
BsnI	GGCC	1 cut(s)	211
Bso31I	GGTCTC	1 cut(s)	136
BsoBI	CYCGRG	1 cut(s)	258
Bsp119I	TTCGAA	1 cut(s)	26
Bsp1286I	GDGCHC	1 cut(s)	66
Bsp143I	GATC	3 cut(s)	3, 268, 346
BspACI	CCGC	1 cut(s)	218
BspANI	GGCC	1 cut(s)	211
BspCNI	CTCAG	2 cut(s)	146, 198
BspLI	GGNNCC	1 cut(s)	222
BspPI	GGATC	1 cut(s)	341
BspT104I	TTCGAA	1 cut(s)	26
BspT107I	GGYRCC	1 cut(s)	220
BspTI	CTTAAG	1 cut(s)	16
BspTNI	GGTCTC	1 cut(s)	136
BsrDI	GCAATG	1 cut(s)	54
BsrI	ACTGG	1 cut(s)	350
BssMI	GATC	3 cut(s)	3, 268, 346
Bst4CI	ACNGT	1 cut(s)	339
Bst6I	CTCTTC	1 cut(s)	192
BstAFI	CTTAAG	1 cut(s)	16
BstBI	TTCGAA	1 cut(s)	26
BstDEI	CTNAG	2 cut(s)	133, 206
BstF5I	GGATG	1 cut(s)	55
BstKTI	GATC	3 cut(s)	6, 271, 349
BstMAI	GTCTC	2 cut(s)	136, 137
BstMBI	GATC	3 cut(s)	3, 268, 346
BstNSI	RCATGY	2 cut(s)	92, 305
BstSCI	CCNGG	1 cut(s)	59
BstSLI	GKGCMC	1 cut(s)	66
BsuRI	GGCC	1 cut(s)	211
BtsCI	GGATG	1 cut(s)	55
BtsI	GCAGTG	1 cut(s)	213
BtsIMutI	CAGTG	3 cut(s)	213, 335, 357
Cfr13I	GGNCC	1 cut(s)	210
CviAII	CATG	3 cut(s)	89, 115, 302
CviJI	RGCY	3 cut(s)	23, 43, 211
CviKI_1	RGCY	3 cut(s)	23, 43, 211
DdeI	CTNAG	2 cut(s)	133, 206
DpnI	GATC	3 cut(s)	5, 270, 348
DpnII	GATC	3 cut(s)	3, 268, 346
Eam1104I	CTCTTC	1 cut(s)	192
EarI	CTCTTC	1 cut(s)	192
Eco31I	GGTCTC	1 cut(s)	136
Eco88I	CYCGRG	1 cut(s)	258
FaeI	CATG	3 cut(s)	92, 118, 305
FaiI	YATR	7 cut(s)	35, 47, 90, 116, 126, 191, 303
FatI	CATG	3 cut(s)	88, 114, 301
FokI	GGATG	1 cut(s)	62
FspBI	CTAG	1 cut(s)	99
HaeIII	GGCC	1 cut(s)	211
HapII	CCGG	1 cut(s)	60
Hin1II	CATG	3 cut(s)	92, 118, 305
HinfI	GANTC	1 cut(s)	176
HpaII	CCGG	1 cut(s)	60
Hpy188I	TCNGA	4 cut(s)	8, 136, 207, 362
HpyAV	CCTTC	2 cut(s)	178, 304
HpyCH4III	ACNGT	1 cut(s)	339
HpyF3I	CTNAG	2 cut(s)	133, 206
Hsp92II	CATG	3 cut(s)	92, 118, 305
Kzo9I	GATC	3 cut(s)	3, 268, 346
LpnPI	CCDG	1 cut(s)	73
LweI	GCATC	1 cut(s)	280
MaeI	CTAG	1 cut(s)	99
MalI	GATC	3 cut(s)	5, 270, 348
MboI	GATC	3 cut(s)	3, 268, 346
MboII	GAAGA	1 cut(s)	209
MfeI	CAATTG	1 cut(s)	147
MhlI	GDGCHC	1 cut(s)	66
MluCI	AATT	4 cut(s)	11, 147, 168, 225
MmeI	TCCRAC	1 cut(s)	286
MnlI	CCTC	2 cut(s)	75, 201
MroXI	GAANNNNTTC	1 cut(s)	201
MseI	TTAA	4 cut(s)	17, 159, 237, 249
MslI	CAYNNNNRTG	1 cut(s)	218
MspCI	CTTAAG	1 cut(s)	16
MspI	CCGG	1 cut(s)	60
MspR9I	CCNGG	1 cut(s)	61
MunI	CAATTG	1 cut(s)	147
NciI	CCSGG	1 cut(s)	61
NdeII	GATC	3 cut(s)	3, 268, 346
NlaIII	CATG	3 cut(s)	92, 118, 305
NlaIV	GGNNCC	1 cut(s)	222
NspI	RCATGY	2 cut(s)	92, 305
NspV	TTCGAA	1 cut(s)	26
OliI	CACNNNNGTG	1 cut(s)	218
PaeR7I	CTCGAG	1 cut(s)	258
PdmI	GAANNNNTTC	1 cut(s)	201
PfeI	GAWTC	1 cut(s)	176
PspN4I	GGNNCC	1 cut(s)	222
PspPI	GGNCC	1 cut(s)	210
PspXI	VCTCGAGB	1 cut(s)	258
RseI	CAYNNNNRTG	1 cut(s)	218
SaqAI	TTAA	4 cut(s)	17, 159, 237, 249
Sau3AI	GATC	3 cut(s)	3, 268, 346
Sau96I	GGNCC	1 cut(s)	210
ScrFI	CCNGG	1 cut(s)	61
SduI	GDGCHC	1 cut(s)	66
SetI	ASST	2 cut(s)	25, 255
SfaNI	GCATC	1 cut(s)	280
Sfr274I	CTCGAG	1 cut(s)	258
SfuI	TTCGAA	1 cut(s)	26
SlaI	CTCGAG	1 cut(s)	258
SmiMI	CAYNNNNRTG	1 cut(s)	218
SmlI	CTYRAG	2 cut(s)	16, 258
SmoI	CTYRAG	2 cut(s)	16, 258
Sse9I	AATT	4 cut(s)	11, 147, 168, 225
SsiI	CCGC	1 cut(s)	218
SspMI	CTAG	1 cut(s)	99
StyD4I	CCNGG	1 cut(s)	59
TaaI	ACNGT	1 cut(s)	339
TaqI	TCGA	2 cut(s)	26, 259
TasI	AATT	4 cut(s)	11, 147, 168, 225
TfiI	GAWTC	1 cut(s)	176
Tru1I	TTAA	4 cut(s)	17, 159, 237, 249
Tru9I	TTAA	4 cut(s)	17, 159, 237, 249
TscAI	CASTG	3 cut(s)	220, 342, 357
TspDTI	ATGAA	3 cut(s)	131, 135, 332
TspRI	CASTG	3 cut(s)	220, 342, 357
Vha464I	CTTAAG	1 cut(s)	16
XapI	RAATTY	1 cut(s)	11
XceI	RCATGY	2 cut(s)	92, 305
XhoI	CTCGAG	1 cut(s)	258
XmnI	GAANNNNTTC	1 cut(s)	201
XspI	CTAG	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.