Rroxscaffold_1G00044360

(-)-alpha-pinene synthase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000979
Physical Location & Seq
Reverse (-)
63280777 .. 63281276
500 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00044360.1

Sequence Viewer

Length: 321 bp
ATGGATGACATTGGAGGGAGCAAGACAGAAAGGCTGAAAGGGGATGTTGTTTCTAGTATTGATTGCTACATGAAGCAATATGGGGTCTCAGAGGAAGAGACAATCGATGTGTTCAACAAACAAATTGTGGATTCATGGAAGGAAATAAATGAGGATTTACTTCGACCAACTACTTTGCCAATGTTTGTGCTCATGCGCGTTCTTAATTTCGCAAGAGATGTAGATCTGGTTTACAAAGGAGAAGATGGCTATAAACATGTTGGGAAAGTAGTAAAACATGGTGTCGCTGCACTTTTAGGTGATTCATTGCCACTCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 map00909
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

106

Amino Acids

11.92

Weight (kDa)

5.09

Isoelectric Point (pI)

32.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth_C PF03936 1 - 48 7e-13 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 1 - 48 7.4e-11 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 198
AflIII ACRYGT 1 cut(s) 256
AgsI TTSAA 1 cut(s) 115
Alw21I GWGCWC 1 cut(s) 192
Alw26I GTCTC 2 cut(s) 91, 92
ApeKI GCWGC 1 cut(s) 287
AspLEI GCGC 1 cut(s) 198
AsuHPI GGTGA 1 cut(s) 311
Bbv12I GWGCWC 1 cut(s) 192
BbvI GCAGC 1 cut(s) 274
BccI CCATC 1 cut(s) 239
BcoDI GTCTC 2 cut(s) 91, 92
BfaI CTAG 1 cut(s) 54
BglII AGATCT 1 cut(s) 223
BisI GCNGC 1 cut(s) 288
BlsI GCNGC 1 cut(s) 289
Bsa29I ATCGAT 1 cut(s) 105
BsaBI GATNNNNATC 1 cut(s) 222
BsaI GGTCTC 1 cut(s) 91
Bse3DI GCAATG 1 cut(s) 305
Bse8I GATNNNNATC 1 cut(s) 222
BseCI ATCGAT 1 cut(s) 105
BseGI GGATG 2 cut(s) 10, 49
BseJI GATNNNNATC 1 cut(s) 222
BseMI GCAATG 1 cut(s) 305
BseMII CTCAG 1 cut(s) 102
BseXI GCAGC 1 cut(s) 274
BsgI GTGCAG 1 cut(s) 273
Bsh1236I CGCG 1 cut(s) 198
BshVI ATCGAT 1 cut(s) 105
BsiHKAI GWGCWC 1 cut(s) 192
BsmAI GTCTC 2 cut(s) 91, 92
Bso31I GGTCTC 1 cut(s) 91
Bsp1286I GDGCHC 1 cut(s) 192
Bsp143I GATC 1 cut(s) 223
BspCNI CTCAG 1 cut(s) 101
BspDI ATCGAT 1 cut(s) 105
BspFNI CGCG 1 cut(s) 198
BspTNI GGTCTC 1 cut(s) 91
BsrDI GCAATG 1 cut(s) 305
BssMI GATC 1 cut(s) 223
Bst6I CTCTTC 1 cut(s) 90
BstDEI CTNAG 1 cut(s) 88
BstF5I GGATG 2 cut(s) 10, 49
BstFNI CGCG 1 cut(s) 198
BstHHI GCGC 1 cut(s) 198
BstKTI GATC 1 cut(s) 226
BstMAI GTCTC 2 cut(s) 91, 92
BstMBI GATC 1 cut(s) 223
BstNSI RCATGY 1 cut(s) 260
BstUI CGCG 1 cut(s) 198
BstV1I GCAGC 1 cut(s) 274
BstX2I RGATCY 1 cut(s) 223
BstYI RGATCY 1 cut(s) 223
Bsu15I ATCGAT 1 cut(s) 105
BsuTUI ATCGAT 1 cut(s) 105
BtsCI GGATG 2 cut(s) 10, 49
CfoI GCGC 1 cut(s) 198
ClaI ATCGAT 1 cut(s) 105
CviAII CATG 5 cut(s) 70, 135, 193, 257, 278
CviJI RGCY 2 cut(s) 34, 249
CviKI_1 RGCY 2 cut(s) 34, 249
DdeI CTNAG 1 cut(s) 88
DpnI GATC 1 cut(s) 225
DpnII GATC 1 cut(s) 223
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
Eco31I GGTCTC 1 cut(s) 91
FaeI CATG 5 cut(s) 73, 138, 196, 260, 281
FaiI YATR 7 cut(s) 71, 81, 136, 194, 252, 258, 279
FatI CATG 5 cut(s) 69, 134, 192, 256, 277
Fnu4HI GCNGC 1 cut(s) 288
FokI GGATG 2 cut(s) 17, 56
Fsp4HI GCNGC 1 cut(s) 288
FspBI CTAG 1 cut(s) 54
GlaI GCGC 1 cut(s) 197
GluI GCNGC 1 cut(s) 288
HhaI GCGC 1 cut(s) 198
Hin1II CATG 5 cut(s) 73, 138, 196, 260, 281
Hin6I GCGC 1 cut(s) 196
HinP1I GCGC 1 cut(s) 196
HinfI GANTC 2 cut(s) 131, 302
HphI GGTGA 1 cut(s) 311
Hpy166II GTNNAC 1 cut(s) 232
Hpy188I TCNGA 1 cut(s) 91
Hpy8I GTNNAC 1 cut(s) 232
HpyAV CCTTC 1 cut(s) 133
HpyCH4V TGCA 1 cut(s) 290
HpyF3I CTNAG 1 cut(s) 88
Hsp92II CATG 5 cut(s) 73, 138, 196, 260, 281
HspAI GCGC 1 cut(s) 196
Kzo9I GATC 1 cut(s) 223
LmnI GCTCC 1 cut(s) 18
LpnPI CCDG 1 cut(s) 212
Lsp1109I GCAGC 1 cut(s) 274
MaeI CTAG 1 cut(s) 54
MalI GATC 1 cut(s) 225
MboI GATC 1 cut(s) 223
MboII GAAGA 2 cut(s) 107, 254
MflI RGATCY 1 cut(s) 223
MhlI GDGCHC 1 cut(s) 192
MluCI AATT 2 cut(s) 123, 205
MnlI CCTC 3 cut(s) 8, 85, 145
MseI TTAA 1 cut(s) 204
MslI CAYNNNNRTG 1 cut(s) 316
MvnI CGCG 1 cut(s) 198
NdeII GATC 1 cut(s) 223
NlaIII CATG 5 cut(s) 73, 138, 196, 260, 281
NspI RCATGY 1 cut(s) 260
PciI ACATGT 1 cut(s) 256
PfeI GAWTC 2 cut(s) 131, 302
PkrI GCNGC 1 cut(s) 289
PscI ACATGT 1 cut(s) 256
PsuI RGATCY 1 cut(s) 223
RseI CAYNNNNRTG 1 cut(s) 316
SaqAI TTAA 1 cut(s) 204
SatI GCNGC 1 cut(s) 288
Sau3AI GATC 1 cut(s) 223
SduI GDGCHC 1 cut(s) 192
SetI ASST 1 cut(s) 301
SmiMI CAYNNNNRTG 1 cut(s) 316
Sse9I AATT 2 cut(s) 123, 205
SspMI CTAG 1 cut(s) 54
TaqI TCGA 2 cut(s) 105, 163
TasI AATT 2 cut(s) 123, 205
TfiI GAWTC 2 cut(s) 131, 302
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TseI GCWGC 1 cut(s) 287
TspDTI ATGAA 3 cut(s) 86, 123, 294
XceI RCATGY 1 cut(s) 260
XspI CTAG 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.