FvH4_4g13771

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000637
Physical Location & Seq
Reverse (-)
17296182 .. 17297830
1649 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g13771.t1

Sequence Viewer

Length: 879 bp
ATGGACGATGAACGAAGATGGGAGGAATTAGAGGTTGACTGTCTGATGAATATATTTGGAAGAGTAGGAATGGAGTCATTGCTTTTGGATGTCCCTTTTGTATGCAAGTCATGGCACAAAGCAACTCTAAACCCCTCATGCTGGCAATATCTCATATTTCCTGATCTTACTATTAATCATTTTGGTTTCGACCCTACGGATGGATATTGGTGTACCCTTATTGAAAGATTTGTAGATGAGTATTGGCTTGATGAGAGCCGTTTCTCGGTGACTGCATTTGTTAAGTTCATTATTAGTCGTAGCAAAGGAAAGGCTATTACTCTCAGGCTATCTCCATGTGCTTCAGAAGATGTCTTGAAATATGCTGCAGATGAGTGTCCTGCCCTGAAGGGTCTGGTATTGCCCAGCGATTTGGTGTACCATCAGTCGAGCACAATTCAAGAACTAATTGGGAAGTGGACAAATTTGGAGGACTTGGTATTGGGAAGCAGCTATGATTTGGAGCACTTCCTTGGACAGATCTCTATTCATTGCAAGAACTTGTGTCTTTTGAGTGTGCTTAATGCAGACATTGATCAAGATAGCGCAAACGCAATTGTTAGCTTCCTGCCTAAGCTTAAGCAATTAATCTTGAAGAAGGCAAATATTGATCGGGATGATCTTGTGACCCTACTGCGGGGCTGCAACGAGCTTGTGCGGTTGGATGTCAGCGATTGTGTAGGTTTTGATGAGGAAGATGAAGAAATAGCAAACCTTGCTTTTCATATTGCTAATTTCAGCTCTCAGGGTTCTGCACTATTGGGCTCCGATGATGAGTATGAGTGCTATGAGTGTGCAGATGATTACCATGATGATCTCAGTGGATACCGTTCTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

293

Amino Acids

33.17

Weight (kDa)

4.4

Isoelectric Point (pI)

50.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 155 - 238 6.4e-06 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000637)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13771 FvH4_4g13861 FvH4_4g13862 FvH4_4g13890 FvH4_4g13890 FvH4_4g13890 FvH4_4g13901
malus_domestica MD04G1010000.v1.1
prunus_persica Prupe.1G009600_v2.0.a1 Prupe.1G010100_v2.0.a1 Prupe.1G012400_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G157400_v2.0.a1 Prupe.1G157500_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.2G138900_v2.0.a1 Prupe.6G053000_v2.0.a1
pyrus_communis pycom04g00810
rosa_chinensis RchiOBHm_Chr4g0414621 RchiOBHm_Chr4g0414631 RchiOBHm_Chr4g0414641 RchiOBHm_Chr4g0415011 RchiOBHm_Chr4g0415031
rosa_laevigata RLG00000008101 RLG00000008104 RLG00000008138 RLG00000008139 RLG00000008140 RLG00000008354
rosa_multiflora Rmu_co8247483.1_g000001 Rmu_sc0003611.1_g000009 Rmu_sc0003611.1_g000014 Rmu_sc0007034.1_g000033 Rmu_sc0007391.1_g000006 Rmu_sc0011778.1_g000017 Rmu_sc0016172.1_g000002
rosa_roxburghii Rroxscaffold_5G00358400 Rroxscaffold_5G00358430 Rroxscaffold_5G00358610 Rroxscaffold_5G00358740 Rroxscaffold_5G00358750 Rroxscaffold_5G00358770
rosa_rugosa Rorug04G0108700 Rorug04G0128400 Rorug04G0128500 Rorug04G0128900 Rorug04G0129000 Rorug04G0129100 Rorug04G0131400 Rorug04G0131500 Rorug04G0131600 Rorug04G0131800 Rorug04G0131900
rosa_samantha Rh4AG187100 Rh4AG187200 Rh4AG190700 Rh4AG191200 Rh4BG185800 Rh4BG186100 Rh4BG188700 Rh4BG188900 Rh4BG189300 Rh4CG199200 Rh4CG199700 Rh4CG201900 Rh4CG202100 Rh4DG185400 Rh4DG185700 Rh4DG189300 Rh4DG189700 Rh6CG237600
rosa_wichuraiana Rw4G015970 Rw4G016000 Rw4G016240 Rw4G016260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 676, 697
AcsI RAATTY 1 cut(s) 463
AcuI CTGAAG 2 cut(s) 327, 407
AfaI GTAC 2 cut(s) 214, 419
AfiI CCNNNNNNNGG 5 cut(s) 141, 200, 265, 675, 676
AflII CTTAAG 1 cut(s) 617
AgsI TTSAA 4 cut(s) 224, 358, 440, 634
AluBI AGCT 5 cut(s) 492, 603, 616, 691, 780
AluI AGCT 5 cut(s) 492, 603, 616, 691, 780
Alw21I GWGCWC 2 cut(s) 434, 507
ApeKI GCWGC 3 cut(s) 365, 489, 681
ApoI RAATTY 1 cut(s) 463
AseI ATTAAT 2 cut(s) 174, 626
AspLEI GCGC 1 cut(s) 587
AsuHPI GGTGA 1 cut(s) 280
BanII GRGCYC 1 cut(s) 806
Bbv12I GWGCWC 2 cut(s) 434, 507
BbvI GCAGC 3 cut(s) 352, 501, 668
BccI CCATC 3 cut(s) 12, 194, 429
BceAI ACGGC 1 cut(s) 243
BciVI GTATCC 1 cut(s) 857
BclI TGATCA 1 cut(s) 574
BfmI CTRYAG 1 cut(s) 366
BfrI CTTAAG 1 cut(s) 617
BfuI GTATCC 1 cut(s) 857
BglII AGATCT 1 cut(s) 519
BisI GCNGC 3 cut(s) 366, 490, 682
BlsI GCNGC 3 cut(s) 367, 491, 683
BmiI GGNNCC 1 cut(s) 805
Bpu10I CCTNAGC 1 cut(s) 612
BsaJI CCNNGG 1 cut(s) 511
Bsc4I CCNNNNNNNGG 5 cut(s) 141, 200, 265, 675, 676
Bse3DI GCAATG 2 cut(s) 77, 529
BseDI CCNNGG 1 cut(s) 511
BseGI GGATG 4 cut(s) 94, 205, 661, 709
BseLI CCNNNNNNNGG 5 cut(s) 141, 200, 265, 675, 676
BseMI GCAATG 2 cut(s) 77, 529
BseMII CTCAG 3 cut(s) 337, 797, 871
BseXI GCAGC 3 cut(s) 352, 501, 668
BseYI CCCAGC 1 cut(s) 404
BsgI GTGCAG 2 cut(s) 777, 855
BsiHKAI GWGCWC 2 cut(s) 434, 507
BslFI GGGAC 1 cut(s) 77
BslI CCNNNNNNNGG 5 cut(s) 141, 200, 265, 675, 676
BsmFI GGGAC 1 cut(s) 77
Bsp1286I GDGCHC 3 cut(s) 434, 507, 806
Bsp143I GATC 6 cut(s) 163, 519, 574, 649, 658, 853
BspACI CCGC 2 cut(s) 676, 697
BspCNI CTCAG 3 cut(s) 336, 796, 870
BspLI GGNNCC 1 cut(s) 805
BspMAI CTGCAG 1 cut(s) 370
BspTI CTTAAG 1 cut(s) 617
BsrDI GCAATG 2 cut(s) 77, 529
BssECI CCNNGG 1 cut(s) 511
BssMI GATC 6 cut(s) 163, 519, 574, 649, 658, 853
BssT1I CCWWGG 1 cut(s) 511
Bst4CI ACNGT 2 cut(s) 41, 869
Bst6I CTCTTC 1 cut(s) 55
BstAFI CTTAAG 1 cut(s) 617
BstAPI GCANNNNNTGC 1 cut(s) 755
BstC8I GCNNGC 1 cut(s) 143
BstDEI CTNAG 4 cut(s) 323, 612, 783, 857
BstF5I GGATG 4 cut(s) 94, 205, 661, 709
BstHHI GCGC 1 cut(s) 587
BstKTI GATC 6 cut(s) 166, 522, 577, 652, 661, 856
BstMBI GATC 6 cut(s) 163, 519, 574, 649, 658, 853
BstMWI GCNNNNNNNGC 1 cut(s) 755
BstSFI CTRYAG 1 cut(s) 366
BstV1I GCAGC 3 cut(s) 352, 501, 668
BstX2I RGATCY 1 cut(s) 519
BstXI CCANNNNNNTGG 1 cut(s) 412
BstYI RGATCY 1 cut(s) 519
BsuI GTATCC 1 cut(s) 857
BtsCI GGATG 4 cut(s) 94, 205, 661, 709
BtsIMutI CAGTG 1 cut(s) 865
Cac8I GCNNGC 1 cut(s) 143
CfoI GCGC 1 cut(s) 587
Csp6I GTAC 2 cut(s) 213, 418
CviAII CATG 4 cut(s) 111, 138, 336, 848
CviQI GTAC 2 cut(s) 213, 418
DdeI CTNAG 4 cut(s) 323, 612, 783, 857
DpnI GATC 6 cut(s) 165, 521, 576, 651, 660, 855
DpnII GATC 6 cut(s) 163, 519, 574, 649, 658, 853
Eam1104I CTCTTC 1 cut(s) 55
EarI CTCTTC 1 cut(s) 55
Eco130I CCWWGG 1 cut(s) 511
Eco24I GRGCYC 1 cut(s) 806
Eco57I CTGAAG 2 cut(s) 327, 407
EcoT14I CCWWGG 1 cut(s) 511
EcoT38I GRGCYC 1 cut(s) 806
ErhI CCWWGG 1 cut(s) 511
FaeI CATG 4 cut(s) 114, 141, 339, 851
FaqI GGGAC 1 cut(s) 77
FatI CATG 4 cut(s) 110, 137, 335, 847
FauI CCCGC 1 cut(s) 669
FbaI TGATCA 1 cut(s) 574
Fnu4HI GCNGC 3 cut(s) 366, 490, 682
FokI GGATG 4 cut(s) 101, 212, 668, 716
FriOI GRGCYC 1 cut(s) 806
Fsp4HI GCNGC 3 cut(s) 366, 490, 682
GlaI GCGC 1 cut(s) 586
GluI GCNGC 3 cut(s) 366, 490, 682
GsaI CCCAGC 1 cut(s) 408
HhaI GCGC 1 cut(s) 587
Hin1II CATG 4 cut(s) 114, 141, 339, 851
Hin6I GCGC 1 cut(s) 585
HinP1I GCGC 1 cut(s) 585
HincII GTYRAC 1 cut(s) 37
HindII GTYRAC 1 cut(s) 37
HindIII AAGCTT 1 cut(s) 614
HinfI GANTC 1 cut(s) 74
HphI GGTGA 1 cut(s) 280
Hpy166II GTNNAC 4 cut(s) 37, 213, 418, 459
Hpy188I TCNGA 4 cut(s) 45, 346, 808, 874
Hpy188III TCNNGA 6 cut(s) 161, 355, 440, 578, 631, 653
Hpy8I GTNNAC 4 cut(s) 37, 213, 418, 459
HpyAV CCTTC 2 cut(s) 382, 631
HpyCH4III ACNGT 2 cut(s) 41, 869
HpyCH4V TGCA 8 cut(s) 105, 275, 368, 534, 566, 684, 794, 836
HpyF10VI GCNNNNNNNGC 1 cut(s) 755
HpyF3I CTNAG 4 cut(s) 323, 612, 783, 857
Hsp92II CATG 4 cut(s) 114, 141, 339, 851
HspAI GCGC 1 cut(s) 585
Ksp22I TGATCA 1 cut(s) 574
Kzo9I GATC 6 cut(s) 163, 519, 574, 649, 658, 853
LmnI GCTCC 2 cut(s) 502, 809
LpnPI CCDG 9 cut(s) 127, 174, 310, 380, 393, 398, 418, 620, 770
Lsp1109I GCAGC 3 cut(s) 352, 501, 668
MaeIII GTNAC 2 cut(s) 268, 664
MalI GATC 6 cut(s) 165, 521, 576, 651, 660, 855
MboI GATC 6 cut(s) 163, 519, 574, 649, 658, 853
MboII GAAGA 6 cut(s) 27, 72, 359, 646, 746, 752
MfeI CAATTG 1 cut(s) 594
MflI RGATCY 1 cut(s) 519
MhlI GDGCHC 3 cut(s) 434, 507, 806
MluCI AATT 7 cut(s) 26, 435, 447, 463, 594, 623, 772
MlyI GAGTC 1 cut(s) 83
MmeI TCCRAC 1 cut(s) 681
MnlI CCTC 5 cut(s) 16, 25, 145, 463, 724
MseI TTAA 5 cut(s) 174, 282, 561, 618, 626
MspCI CTTAAG 1 cut(s) 617
MunI CAATTG 1 cut(s) 594
MwoI GCNNNNNNNGC 1 cut(s) 755
NdeII GATC 6 cut(s) 163, 519, 574, 649, 658, 853
NlaIII CATG 4 cut(s) 114, 141, 339, 851
NlaIV GGNNCC 1 cut(s) 805
NmuCI GTSAC 2 cut(s) 268, 664
PkrI GCNGC 3 cut(s) 367, 491, 683
PleI GAGTC 1 cut(s) 82
PpsI GAGTC 1 cut(s) 82
PshBI ATTAAT 2 cut(s) 174, 626
PspFI CCCAGC 1 cut(s) 404
PspN4I GGNNCC 1 cut(s) 805
PstI CTGCAG 1 cut(s) 370
PsuI RGATCY 1 cut(s) 519
RsaI GTAC 2 cut(s) 214, 419
RsaNI GTAC 2 cut(s) 213, 418
SaqAI TTAA 5 cut(s) 174, 282, 561, 618, 626
SatI GCNGC 3 cut(s) 366, 490, 682
Sau3AI GATC 6 cut(s) 163, 519, 574, 649, 658, 853
SchI GAGTC 1 cut(s) 83
SduI GDGCHC 3 cut(s) 434, 507, 806
SetI ASST 8 cut(s) 36, 494, 605, 618, 693, 724, 756, 782
SfcI CTRYAG 1 cut(s) 366
SmlI CTYRAG 1 cut(s) 617
SmoI CTYRAG 1 cut(s) 617
Sse9I AATT 7 cut(s) 26, 435, 447, 463, 594, 623, 772
SsiI CCGC 2 cut(s) 676, 697
SspI AATATT 1 cut(s) 646
StyI CCWWGG 1 cut(s) 511
TaaI ACNGT 2 cut(s) 41, 869
TaqI TCGA 2 cut(s) 189, 428
TasI AATT 7 cut(s) 26, 435, 447, 463, 594, 623, 772
Tru1I TTAA 5 cut(s) 174, 282, 561, 618, 626
Tru9I TTAA 5 cut(s) 174, 282, 561, 618, 626
TscAI CASTG 1 cut(s) 865
TseFI GTSAC 2 cut(s) 268, 664
TseI GCWGC 3 cut(s) 365, 489, 681
Tsp45I GTSAC 2 cut(s) 268, 664
TspDTI ATGAA 6 cut(s) 24, 62, 277, 518, 752, 753
TspGWI ACGGA 1 cut(s) 212
TspRI CASTG 1 cut(s) 865
Vha464I CTTAAG 1 cut(s) 617
VspI ATTAAT 2 cut(s) 174, 626
XapI RAATTY 1 cut(s) 463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.