Prupe.1G009600_v2.0.a1

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000637
Physical Location & Seq
Reverse (-)
757869 .. 758856
988 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G009600.1

Sequence Viewer

Length: 759 bp
ATGGACTGCTTGGTCAAAGTGTTGGAGAAAGTTGGAATGGAGTCACTGCTTTTGGATGTCCCTTTTGTGTGCAAGTCGTGGTACAAGGCGACCCTCAATCCTTCATGCTGCGAATGTATTGAAGTCTGGCCTTGGGATGTGTCTGAATGTCCGAAATTTTATAATCTTATGGACAGATTTGTGAGTGAGTATCAAATTGATGGGGATCGTTTCTCTGTCACCGCTTTTCTAAAGTTTGTGATCAATCGGAGCAGCAGAAATGCTACTGTGCTCAAGTTTCCGAATGCTGCACAGTGTCCTGGCCTTGTGACTTTGAGTTTACCAGGAGATGCATTGGACAGCAAACACACGAACCTAGAGCTGATTGGCAAGTGGAAAAATTTGGAGGCTAATTTTCATGGACGTGAGGCATCCTCAATTGTGAAGTTGGTGCCTAATATCAAGTACTTAAATTTGAAAGGTGCAAAAGTTAGTCGGGATAGTCTTGTCATGTTGCTGTGCGGATGCAAAGATCTGGTGATGTTGGACGCCAGAGATTGTTCTGGTTTCAATGAGAATGACGATGAAATATCAAAGCTTGCCTCTCATATTAGTAAATTTATGTGCGAGGGTTCTGAAAATCCTGAATTTCTTCGTGATATGGACAATTTGGTTCTTCCTGTTGATGGATACTCATTTCATCAGCATGTGGAGGAGAATTGGGATGAAATGCTCAATGATTTGCACAATGCGTTCAATGATTTGGGCGACGAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

253

Amino Acids

28.57

Weight (kDa)

4.81

Isoelectric Point (pI)

35.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000637)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13771 FvH4_4g13861 FvH4_4g13862 FvH4_4g13890 FvH4_4g13890 FvH4_4g13890 FvH4_4g13901
malus_domestica MD04G1010000.v1.1
prunus_persica Prupe.1G009600_v2.0.a1 Prupe.1G010100_v2.0.a1 Prupe.1G012400_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G157400_v2.0.a1 Prupe.1G157500_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.2G138900_v2.0.a1 Prupe.6G053000_v2.0.a1
pyrus_communis pycom04g00810
rosa_chinensis RchiOBHm_Chr4g0414621 RchiOBHm_Chr4g0414631 RchiOBHm_Chr4g0414641 RchiOBHm_Chr4g0415011 RchiOBHm_Chr4g0415031
rosa_laevigata RLG00000008101 RLG00000008104 RLG00000008138 RLG00000008139 RLG00000008140 RLG00000008354
rosa_multiflora Rmu_co8247483.1_g000001 Rmu_sc0003611.1_g000009 Rmu_sc0003611.1_g000014 Rmu_sc0007034.1_g000033 Rmu_sc0007391.1_g000006 Rmu_sc0011778.1_g000017 Rmu_sc0016172.1_g000002
rosa_roxburghii Rroxscaffold_5G00358400 Rroxscaffold_5G00358430 Rroxscaffold_5G00358610 Rroxscaffold_5G00358740 Rroxscaffold_5G00358750 Rroxscaffold_5G00358770
rosa_rugosa Rorug04G0108700 Rorug04G0128400 Rorug04G0128500 Rorug04G0128900 Rorug04G0129000 Rorug04G0129100 Rorug04G0131400 Rorug04G0131500 Rorug04G0131600 Rorug04G0131800 Rorug04G0131900
rosa_samantha Rh4AG187100 Rh4AG187200 Rh4AG190700 Rh4AG191200 Rh4BG185800 Rh4BG186100 Rh4BG188700 Rh4BG188900 Rh4BG189300 Rh4CG199200 Rh4CG199700 Rh4CG201900 Rh4CG202100 Rh4DG185400 Rh4DG185700 Rh4DG189300 Rh4DG189700 Rh6CG237600
rosa_wichuraiana Rw4G015970 Rw4G016000 Rw4G016240 Rw4G016260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 162
AasI GACNNNNNNGTC 1 cut(s) 11
AccB1I GGYRCC 1 cut(s) 430
AciI CCGC 2 cut(s) 222, 501
AclWI GGATC 1 cut(s) 213
AcsI RAATTY 5 cut(s) 155, 379, 451, 596, 626
AcyI GRCGYC 1 cut(s) 528
AfaI GTAC 2 cut(s) 83, 446
AfiI CCNNNNNNNGG 1 cut(s) 665
AgsI TTSAA 4 cut(s) 122, 457, 550, 736
AjiI CACGTC 1 cut(s) 404
AjnI CCWGG 2 cut(s) 298, 322
AluBI AGCT 2 cut(s) 361, 577
AluI AGCT 2 cut(s) 361, 577
Alw21I GWGCWC 1 cut(s) 273
AlwI GGATC 1 cut(s) 213
AoxI GGCC 2 cut(s) 128, 301
ApeKI GCWGC 3 cut(s) 108, 252, 287
ApoI RAATTY 5 cut(s) 155, 379, 451, 596, 626
Asp700I GAANNNNTTC 1 cut(s) 630
AsuHPI GGTGA 2 cut(s) 211, 529
BanI GGYRCC 1 cut(s) 430
Bbv12I GWGCWC 1 cut(s) 273
BbvI GCAGC 3 cut(s) 95, 264, 274
BccI CCATC 2 cut(s) 194, 659
BciT130I CCWGG 2 cut(s) 300, 324
BciVI GTATCC 1 cut(s) 662
BclI TGATCA 1 cut(s) 240
BfaI CTAG 1 cut(s) 356
BfuI GTATCC 1 cut(s) 662
BglII AGATCT 1 cut(s) 511
BisI GCNGC 3 cut(s) 109, 253, 288
BlsI GCNGC 3 cut(s) 110, 254, 289
BmcAI AGTACT 1 cut(s) 446
Bme1390I CCNGG 2 cut(s) 300, 324
BmgBI CACGTC 1 cut(s) 404
BmiI GGNNCC 1 cut(s) 432
BmrFI CCNGG 2 cut(s) 300, 324
BmsI GCATC 3 cut(s) 319, 419, 494
BplI GAGNNNNNCTC 2 cut(s) 398, 430
BpuEI CTTGAG 1 cut(s) 257
BsaBI GATNNNNATC 1 cut(s) 204
BsaHI GRCGYC 1 cut(s) 528
BsaJI CCNNGG 1 cut(s) 131
Bsc4I CCNNNNNNNGG 1 cut(s) 665
Bse8I GATNNNNATC 1 cut(s) 204
BseBI CCWGG 2 cut(s) 300, 324
BseDI CCNNGG 1 cut(s) 131
BseGI GGATG 5 cut(s) 61, 142, 410, 509, 709
BseJI GATNNNNATC 1 cut(s) 204
BseLI CCNNNNNNNGG 1 cut(s) 665
BseRI GAGGAG 1 cut(s) 707
BseXI GCAGC 3 cut(s) 95, 264, 274
BsgI GTGCAG 1 cut(s) 273
BshFI GGCC 2 cut(s) 130, 303
BshNI GGYRCC 1 cut(s) 430
BsiHKAI GWGCWC 1 cut(s) 273
BslFI GGGAC 1 cut(s) 44
BslI CCNNNNNNNGG 1 cut(s) 665
BsmFI GGGAC 1 cut(s) 44
BsmI GAATGC 1 cut(s) 289
BsnI GGCC 2 cut(s) 130, 303
Bsp1286I GDGCHC 1 cut(s) 273
Bsp143I GATC 3 cut(s) 205, 240, 511
BspACI CCGC 2 cut(s) 222, 501
BspANI GGCC 2 cut(s) 130, 303
BspLI GGNNCC 1 cut(s) 432
BspPI GGATC 1 cut(s) 213
BspT107I GGYRCC 1 cut(s) 430
BssECI CCNNGG 1 cut(s) 131
BssMI GATC 3 cut(s) 205, 240, 511
BssNI GRCGYC 1 cut(s) 528
BssT1I CCWWGG 1 cut(s) 131
Bst2UI CCWGG 2 cut(s) 300, 324
Bst4CI ACNGT 2 cut(s) 268, 294
BstACI GRCGYC 1 cut(s) 528
BstC8I GCNNGC 1 cut(s) 579
BstF5I GGATG 5 cut(s) 61, 142, 410, 509, 709
BstKTI GATC 3 cut(s) 208, 243, 514
BstMBI GATC 3 cut(s) 205, 240, 511
BstNI CCWGG 2 cut(s) 300, 324
BstNSI RCATGY 1 cut(s) 689
BstSCI CCNGG 2 cut(s) 298, 322
BstV1I GCAGC 3 cut(s) 95, 264, 274
BstX2I RGATCY 1 cut(s) 511
BstYI RGATCY 1 cut(s) 511
BsuI GTATCC 1 cut(s) 662
BsuRI GGCC 2 cut(s) 130, 303
BtrI CACGTC 1 cut(s) 404
BtsCI GGATG 5 cut(s) 61, 142, 410, 509, 709
BtsI GCAGTG 1 cut(s) 44
BtsIMutI CAGTG 2 cut(s) 44, 299
Cac8I GCNNGC 1 cut(s) 579
CseI GACGC 1 cut(s) 536
Csp6I GTAC 2 cut(s) 82, 445
CviAII CATG 4 cut(s) 105, 398, 490, 686
CviJI RGCY 5 cut(s) 130, 303, 361, 389, 577
CviKI_1 RGCY 5 cut(s) 130, 303, 361, 389, 577
CviQI GTAC 2 cut(s) 82, 445
DpnI GATC 3 cut(s) 207, 242, 513
DpnII GATC 3 cut(s) 205, 240, 511
DrdI GACNNNNNNGTC 1 cut(s) 11
DseDI GACNNNNNNGTC 1 cut(s) 11
Eco130I CCWWGG 1 cut(s) 131
EcoRII CCWGG 2 cut(s) 298, 322
EcoT14I CCWWGG 1 cut(s) 131
EcoT22I ATGCAT 1 cut(s) 334
ErhI CCWWGG 1 cut(s) 131
FaeI CATG 4 cut(s) 108, 401, 493, 689
FaiI YATR 9 cut(s) 106, 162, 170, 399, 491, 588, 602, 641, 687
FaqI GGGAC 1 cut(s) 44
FatI CATG 4 cut(s) 104, 397, 489, 685
FbaI TGATCA 1 cut(s) 240
Fnu4HI GCNGC 3 cut(s) 109, 253, 288
FokI GGATG 5 cut(s) 68, 149, 397, 516, 716
Fsp4HI GCNGC 3 cut(s) 109, 253, 288
FspBI CTAG 1 cut(s) 356
GluI GCNGC 3 cut(s) 109, 253, 288
HaeIII GGCC 2 cut(s) 130, 303
HgaI GACGC 1 cut(s) 536
Hin1I GRCGYC 1 cut(s) 528
Hin1II CATG 4 cut(s) 108, 401, 493, 689
HindIII AAGCTT 1 cut(s) 575
HinfI GANTC 1 cut(s) 41
HphI GGTGA 2 cut(s) 211, 529
Hpy166II GTNNAC 1 cut(s) 320
Hpy188I TCNGA 5 cut(s) 145, 153, 249, 282, 616
Hpy188III TCNNGA 3 cut(s) 476, 623, 635
Hpy8I GTNNAC 1 cut(s) 320
Hpy99I CGWCG 1 cut(s) 752
HpyAV CCTTC 1 cut(s) 111
HpyCH4III ACNGT 2 cut(s) 268, 294
HpyCH4IV ACGT 1 cut(s) 403
HpyCH4V TGCA 6 cut(s) 72, 290, 332, 464, 507, 724
HpySE526I ACGT 1 cut(s) 403
Hsp92I GRCGYC 1 cut(s) 528
Hsp92II CATG 4 cut(s) 108, 401, 493, 689
Ksp22I TGATCA 1 cut(s) 240
Kzo9I GATC 3 cut(s) 205, 240, 511
LmnI GCTCC 1 cut(s) 249
Lsp1109I GCAGC 3 cut(s) 95, 264, 274
LweI GCATC 3 cut(s) 319, 419, 494
MaeI CTAG 1 cut(s) 356
MaeII ACGT 1 cut(s) 403
MaeIII GTNAC 3 cut(s) 42, 217, 307
MalI GATC 3 cut(s) 207, 242, 513
MboI GATC 3 cut(s) 205, 240, 511
MboII GAAGA 2 cut(s) 623, 647
MfeI CAATTG 1 cut(s) 417
MflI RGATCY 1 cut(s) 511
MhlI GDGCHC 1 cut(s) 273
MlyI GAGTC 1 cut(s) 50
MmeI TCCRAC 2 cut(s) 13, 504
MnlI CCTC 8 cut(s) 104, 379, 400, 424, 592, 601, 685, 745
Mph1103I ATGCAT 1 cut(s) 334
MroXI GAANNNNTTC 1 cut(s) 630
MseI TTAA 1 cut(s) 449
MslI CAYNNNNRTG 2 cut(s) 402, 684
MspR9I CCNGG 2 cut(s) 300, 324
MunI CAATTG 1 cut(s) 417
Mva1269I GAATGC 1 cut(s) 289
MvaI CCWGG 2 cut(s) 300, 324
NdeII GATC 3 cut(s) 205, 240, 511
NlaIII CATG 4 cut(s) 108, 401, 493, 689
NlaIV GGNNCC 1 cut(s) 432
NmuCI GTSAC 3 cut(s) 42, 217, 307
NsiI ATGCAT 1 cut(s) 334
NspI RCATGY 1 cut(s) 689
PctI GAATGC 1 cut(s) 289
PdmI GAANNNNTTC 1 cut(s) 630
PkrI GCNGC 3 cut(s) 110, 254, 289
PleI GAGTC 1 cut(s) 49
PpsI GAGTC 1 cut(s) 49
PsiI TTATAA 1 cut(s) 162
Psp6I CCWGG 2 cut(s) 298, 322
PspGI CCWGG 2 cut(s) 298, 322
PspN4I GGNNCC 1 cut(s) 432
PsuI RGATCY 1 cut(s) 511
RsaI GTAC 2 cut(s) 83, 446
RsaNI GTAC 2 cut(s) 82, 445
RseI CAYNNNNRTG 2 cut(s) 402, 684
SaqAI TTAA 1 cut(s) 449
SatI GCNGC 3 cut(s) 109, 253, 288
Sau3AI GATC 3 cut(s) 205, 240, 511
ScaI AGTACT 1 cut(s) 446
SchI GAGTC 1 cut(s) 50
ScrFI CCNGG 2 cut(s) 300, 324
SduI GDGCHC 1 cut(s) 273
SetI ASST 5 cut(s) 357, 363, 406, 463, 579
SfaNI GCATC 3 cut(s) 319, 419, 494
SmiMI CAYNNNNRTG 2 cut(s) 402, 684
SmlI CTYRAG 1 cut(s) 272
SmoI CTYRAG 1 cut(s) 272
SsiI CCGC 2 cut(s) 222, 501
SspMI CTAG 1 cut(s) 356
StyD4I CCNGG 2 cut(s) 298, 322
StyI CCWWGG 1 cut(s) 131
TaaI ACNGT 2 cut(s) 268, 294
TaiI ACGT 1 cut(s) 406
TatI WGTACW 1 cut(s) 444
Tru1I TTAA 1 cut(s) 449
Tru9I TTAA 1 cut(s) 449
TscAI CASTG 2 cut(s) 51, 299
TseFI GTSAC 3 cut(s) 42, 217, 307
TseI GCWGC 3 cut(s) 108, 252, 287
Tsp45I GTSAC 3 cut(s) 42, 217, 307
TspDTI ATGAA 5 cut(s) 93, 386, 579, 668, 720
TspRI CASTG 2 cut(s) 51, 299
XapI RAATTY 5 cut(s) 155, 379, 451, 596, 626
XceI RCATGY 1 cut(s) 689
XmnI GAANNNNTTC 1 cut(s) 630
XspI CTAG 1 cut(s) 356
ZrmI AGTACT 1 cut(s) 446
Zsp2I ATGCAT 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.