Rroxscaffold_5G00358400

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000637
Physical Location & Seq
Reverse (-)
38494604 .. 38496492
1889 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00358400.1

Sequence Viewer

Length: 975 bp
ATGAAGATGCTGGTAAAACTTTATATATATTTGATTATTTTCCAAGCAATGAAGCGCAAAAACCGTTCCGGGGAAGATCACCAAGCACAAAATACTTATTACGAGATGGAAGATGAACGAAGATGGGAGGAATTAGAGGTTGACTGTTTGATAAATATATTTGGAAGAGTGGGAATGGAGTCATTGCTTTTGGATGTCCCTTTCGTATGCAAGACATGGTACAGAGCAACCCTCGACCCTTCATGCTGGCAATATCTCAAATTTCCTGATGATCTGAGTGACTGTACTTTTAGTTATGACCTTAAAGATCTATATTGGTGTACCCTTATTCAAAGAGTTATAGATGAGTATCGACTTGATGAGACTCGTTTCTCTGTGACTGCATTTGTTAAGTTCATAATCAGGCGTAGCAAAGGAAAGGCTATTTATCTCAGGCTACCCCCATGTGCTTCAGAAGATGTCTTGAAATATGCTGCAGATGAGTGTCCTGCCTTAAAGCTTCTTGCATTGCCCAGCCGTTTAGTGAACCGTAAGTCGAGCATAGTTCAAGAAATAATTGGAAAGTGGACAAATTTGGAGTACTTGGTATTGGGAAGCAGCTATAATTTGGAAAATTTCCTTGGACAGATCTCCATTCACTGCAAGAACTCGTGTGTTTTGCGTGTGGCTGATGCAAACATTGGTAAAGAAGAAGCAATGGCAATTGTTAGCTTGCTGCCTAAGCTTAAGCAATTAATCTTGAAGAATGCATATATTGATCGGGATGATCTTGTGACGCTACTGCGGGGCTGCAACGAGCTTGTGCGTTTGGATGTCAGCAATTGTATAGGTTTTGATGAGGAAGATGAAGAAATAGCAAAGCTTGCTTCTCATATTGCTGATTTCAGCTCTCAGGGTTCCACTCTAGATGATTATGATGATTACGATGGACATATTTCCCATGATGAAGATGTTTATGGATACGGTTCCGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

324

Amino Acids

37.43

Weight (kDa)

4.88

Isoelectric Point (pI)

46.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000637)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13771 FvH4_4g13861 FvH4_4g13862 FvH4_4g13890 FvH4_4g13890 FvH4_4g13890 FvH4_4g13901
malus_domestica MD04G1010000.v1.1
prunus_persica Prupe.1G009600_v2.0.a1 Prupe.1G010100_v2.0.a1 Prupe.1G012400_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G157400_v2.0.a1 Prupe.1G157500_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.2G138900_v2.0.a1 Prupe.6G053000_v2.0.a1
pyrus_communis pycom04g00810
rosa_chinensis RchiOBHm_Chr4g0414621 RchiOBHm_Chr4g0414631 RchiOBHm_Chr4g0414641 RchiOBHm_Chr4g0415011 RchiOBHm_Chr4g0415031
rosa_laevigata RLG00000008101 RLG00000008104 RLG00000008138 RLG00000008139 RLG00000008140 RLG00000008354
rosa_multiflora Rmu_co8247483.1_g000001 Rmu_sc0003611.1_g000009 Rmu_sc0003611.1_g000014 Rmu_sc0007034.1_g000033 Rmu_sc0007391.1_g000006 Rmu_sc0011778.1_g000017 Rmu_sc0016172.1_g000002
rosa_roxburghii Rroxscaffold_5G00358400 Rroxscaffold_5G00358430 Rroxscaffold_5G00358610 Rroxscaffold_5G00358740 Rroxscaffold_5G00358750 Rroxscaffold_5G00358770
rosa_rugosa Rorug04G0108700 Rorug04G0128400 Rorug04G0128500 Rorug04G0128900 Rorug04G0129000 Rorug04G0129100 Rorug04G0131400 Rorug04G0131500 Rorug04G0131600 Rorug04G0131800 Rorug04G0131900
rosa_samantha Rh4AG187100 Rh4AG187200 Rh4AG190700 Rh4AG191200 Rh4BG185800 Rh4BG186100 Rh4BG188700 Rh4BG188900 Rh4BG189300 Rh4CG199200 Rh4CG199700 Rh4CG201900 Rh4CG202100 Rh4DG185400 Rh4DG185700 Rh4DG189300 Rh4DG189700 Rh6CG237600
rosa_wichuraiana Rw4G015970 Rw4G016000 Rw4G016240 Rw4G016260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 784
AcsI RAATTY 3 cut(s) 260, 571, 613
AcuI CTGAAG 1 cut(s) 435
AfaI GTAC 4 cut(s) 221, 286, 322, 581
AfiI CCNNNNNNNGG 1 cut(s) 70
AflII CTTAAG 1 cut(s) 725
AgsI TTSAA 4 cut(s) 332, 466, 548, 742
AjuI GAANNNNNNNTTGG 2 cut(s) 603, 635
AluBI AGCT 7 cut(s) 499, 600, 711, 724, 799, 862, 888
AluI AGCT 7 cut(s) 499, 600, 711, 724, 799, 862, 888
Alw26I GTCTC 1 cut(s) 356
ApeKI GCWGC 4 cut(s) 473, 597, 715, 789
ApoI RAATTY 3 cut(s) 260, 571, 613
AseI ATTAAT 1 cut(s) 734
AspLEI GCGC 1 cut(s) 57
AsuC2I CCSGG 1 cut(s) 70
AsuHPI GGTGA 1 cut(s) 71
BauI CACGAG 1 cut(s) 649
BbvI GCAGC 4 cut(s) 460, 609, 702, 776
BccI CCATC 3 cut(s) 100, 117, 920
BceAI ACGGC 1 cut(s) 501
BciVI GTATCC 1 cut(s) 953
BcnI CCSGG 1 cut(s) 70
BcoDI GTCTC 1 cut(s) 356
BfaI CTAG 1 cut(s) 905
BfmI CTRYAG 1 cut(s) 474
BfrI CTTAAG 1 cut(s) 725
BfuI GTATCC 1 cut(s) 953
BglII AGATCT 2 cut(s) 307, 627
BisI GCNGC 4 cut(s) 474, 598, 716, 790
BlsI GCNGC 4 cut(s) 475, 599, 717, 791
BmcAI AGTACT 1 cut(s) 581
Bme1390I CCNGG 1 cut(s) 70
BmiI GGNNCC 2 cut(s) 898, 967
BmrFI CCNGG 1 cut(s) 70
BmsI GCATC 1 cut(s) 661
BplI GAGNNNNNCTC 2 cut(s) 216, 248
Bpu10I CCTNAGC 1 cut(s) 720
BpuMI CCSGG 1 cut(s) 70
BsaBI GATNNNNATC 1 cut(s) 348
BsaJI CCNNGG 2 cut(s) 69, 619
Bsc4I CCNNNNNNNGG 1 cut(s) 70
Bse3DI GCAATG 4 cut(s) 54, 182, 506, 702
Bse8I GATNNNNATC 1 cut(s) 348
BseDI CCNNGG 2 cut(s) 69, 619
BseGI GGATG 3 cut(s) 199, 769, 817
BseJI GATNNNNATC 1 cut(s) 348
BseLI CCNNNNNNNGG 1 cut(s) 70
BseMI GCAATG 4 cut(s) 54, 182, 506, 702
BseMII CTCAG 3 cut(s) 266, 445, 905
BseXI GCAGC 4 cut(s) 460, 609, 702, 776
BseYI CCCAGC 1 cut(s) 512
BsiSI CCGG 1 cut(s) 69
BslFI GGGAC 1 cut(s) 182
BslI CCNNNNNNNGG 1 cut(s) 70
BsmAI GTCTC 1 cut(s) 356
BsmFI GGGAC 1 cut(s) 182
BsmI GAATGC 1 cut(s) 751
Bsp143I GATC 6 cut(s) 76, 271, 307, 627, 757, 766
BspACI CCGC 1 cut(s) 784
BspCNI CTCAG 3 cut(s) 267, 444, 904
BspLI GGNNCC 2 cut(s) 898, 967
BspMAI CTGCAG 1 cut(s) 478
BspTI CTTAAG 1 cut(s) 725
BsrDI GCAATG 4 cut(s) 54, 182, 506, 702
BssECI CCNNGG 2 cut(s) 69, 619
BssMI GATC 6 cut(s) 76, 271, 307, 627, 757, 766
BssSI CACGAG 1 cut(s) 649
BssT1I CCWWGG 1 cut(s) 619
Bst2BI CACGAG 1 cut(s) 649
Bst4CI ACNGT 5 cut(s) 65, 146, 284, 530, 965
Bst6I CTCTTC 1 cut(s) 160
BstAFI CTTAAG 1 cut(s) 725
BstAPI GCANNNNNTGC 1 cut(s) 863
BstC8I GCNNGC 3 cut(s) 248, 713, 864
BstDEI CTNAG 4 cut(s) 275, 431, 720, 891
BstF5I GGATG 3 cut(s) 199, 769, 817
BstHHI GCGC 1 cut(s) 57
BstKTI GATC 6 cut(s) 79, 274, 310, 630, 760, 769
BstMAI GTCTC 1 cut(s) 356
BstMBI GATC 6 cut(s) 76, 271, 307, 627, 757, 766
BstMWI GCNNNNNNNGC 2 cut(s) 721, 863
BstSCI CCNGG 1 cut(s) 68
BstSFI CTRYAG 1 cut(s) 474
BstV1I GCAGC 4 cut(s) 460, 609, 702, 776
BstX2I RGATCY 2 cut(s) 307, 627
BstYI RGATCY 2 cut(s) 307, 627
BsuI GTATCC 1 cut(s) 953
BtsCI GGATG 3 cut(s) 199, 769, 817
BtsI GCAGTG 1 cut(s) 637
BtsIMutI CAGTG 1 cut(s) 637
Cac8I GCNNGC 3 cut(s) 248, 713, 864
CfoI GCGC 1 cut(s) 57
CseI GACGC 1 cut(s) 784
Csp6I GTAC 4 cut(s) 220, 285, 321, 580
CviAII CATG 4 cut(s) 216, 243, 444, 941
CviQI GTAC 4 cut(s) 220, 285, 321, 580
DdeI CTNAG 4 cut(s) 275, 431, 720, 891
DpnI GATC 6 cut(s) 78, 273, 309, 629, 759, 768
DpnII GATC 6 cut(s) 76, 271, 307, 627, 757, 766
Eam1104I CTCTTC 1 cut(s) 160
EarI CTCTTC 1 cut(s) 160
Eco130I CCWWGG 1 cut(s) 619
Eco57I CTGAAG 1 cut(s) 435
EcoT14I CCWWGG 1 cut(s) 619
EcoT22I ATGCAT 1 cut(s) 751
ErhI CCWWGG 1 cut(s) 619
FaeI CATG 4 cut(s) 219, 246, 447, 944
FaqI GGGAC 1 cut(s) 182
FatI CATG 4 cut(s) 215, 242, 443, 940
FauI CCCGC 1 cut(s) 777
Fnu4HI GCNGC 4 cut(s) 474, 598, 716, 790
FokI GGATG 3 cut(s) 206, 776, 824
Fsp4HI GCNGC 4 cut(s) 474, 598, 716, 790
FspBI CTAG 1 cut(s) 905
GlaI GCGC 1 cut(s) 56
GluI GCNGC 4 cut(s) 474, 598, 716, 790
GsaI CCCAGC 1 cut(s) 516
HapII CCGG 1 cut(s) 69
HgaI GACGC 1 cut(s) 784
HhaI GCGC 1 cut(s) 57
Hin1II CATG 4 cut(s) 219, 246, 447, 944
Hin6I GCGC 1 cut(s) 55
HinP1I GCGC 1 cut(s) 55
HincII GTYRAC 1 cut(s) 142
HindII GTYRAC 1 cut(s) 142
HindIII AAGCTT 3 cut(s) 497, 722, 860
HinfI GANTC 2 cut(s) 179, 364
HpaII CCGG 1 cut(s) 69
HphI GGTGA 1 cut(s) 71
Hpy166II GTNNAC 4 cut(s) 142, 321, 526, 567
Hpy188I TCNGA 3 cut(s) 276, 454, 970
Hpy188III TCNNGA 6 cut(s) 266, 463, 548, 739, 761, 905
Hpy8I GTNNAC 4 cut(s) 142, 321, 526, 567
HpyAV CCTTC 1 cut(s) 249
HpyCH4III ACNGT 5 cut(s) 65, 146, 284, 530, 965
HpyCH4V TGCA 8 cut(s) 210, 383, 476, 506, 642, 674, 749, 792
HpyF10VI GCNNNNNNNGC 2 cut(s) 721, 863
HpyF3I CTNAG 4 cut(s) 275, 431, 720, 891
Hsp92II CATG 4 cut(s) 219, 246, 447, 944
HspAI GCGC 1 cut(s) 55
Kzo9I GATC 6 cut(s) 76, 271, 307, 627, 757, 766
LpnPI CCDG 8 cut(s) 82, 232, 279, 388, 418, 501, 526, 878
Lsp1109I GCAGC 4 cut(s) 460, 609, 702, 776
LweI GCATC 1 cut(s) 661
MaeI CTAG 1 cut(s) 905
MaeIII GTNAC 3 cut(s) 278, 376, 772
MalI GATC 6 cut(s) 78, 273, 309, 629, 759, 768
MboI GATC 6 cut(s) 76, 271, 307, 627, 757, 766
MfeI CAATTG 2 cut(s) 702, 820
MflI RGATCY 2 cut(s) 307, 627
MluCI AATT 9 cut(s) 131, 260, 555, 571, 604, 613, 702, 731, 820
MlyI GAGTC 2 cut(s) 188, 358
MnlI CCTC 4 cut(s) 121, 130, 242, 832
Mph1103I ATGCAT 1 cut(s) 751
MseI TTAA 6 cut(s) 303, 390, 494, 726, 734, 973
MspCI CTTAAG 1 cut(s) 725
MspI CCGG 1 cut(s) 69
MspR9I CCNGG 1 cut(s) 70
MunI CAATTG 2 cut(s) 702, 820
Mva1269I GAATGC 1 cut(s) 751
MwoI GCNNNNNNNGC 2 cut(s) 721, 863
NciI CCSGG 1 cut(s) 70
NdeII GATC 6 cut(s) 76, 271, 307, 627, 757, 766
NlaIII CATG 4 cut(s) 219, 246, 447, 944
NlaIV GGNNCC 2 cut(s) 898, 967
NmuCI GTSAC 3 cut(s) 278, 376, 772
NsiI ATGCAT 1 cut(s) 751
PctI GAATGC 1 cut(s) 751
PkrI GCNGC 4 cut(s) 475, 599, 717, 791
PleI GAGTC 2 cut(s) 187, 358
PpsI GAGTC 2 cut(s) 187, 358
PshBI ATTAAT 1 cut(s) 734
PspFI CCCAGC 1 cut(s) 512
PspN4I GGNNCC 2 cut(s) 898, 967
PstI CTGCAG 1 cut(s) 478
PsuI RGATCY 2 cut(s) 307, 627
RsaI GTAC 4 cut(s) 221, 286, 322, 581
RsaNI GTAC 4 cut(s) 220, 285, 321, 580
SaqAI TTAA 6 cut(s) 303, 390, 494, 726, 734, 973
SatI GCNGC 4 cut(s) 474, 598, 716, 790
Sau3AI GATC 6 cut(s) 76, 271, 307, 627, 757, 766
ScaI AGTACT 1 cut(s) 581
SchI GAGTC 2 cut(s) 188, 358
ScrFI CCNGG 1 cut(s) 70
SfaNI GCATC 1 cut(s) 661
SfcI CTRYAG 1 cut(s) 474
SmlI CTYRAG 1 cut(s) 725
SmoI CTYRAG 1 cut(s) 725
Sse9I AATT 9 cut(s) 131, 260, 555, 571, 604, 613, 702, 731, 820
SsiI CCGC 1 cut(s) 784
SspMI CTAG 1 cut(s) 905
StyD4I CCNGG 1 cut(s) 68
StyI CCWWGG 1 cut(s) 619
TaaI ACNGT 5 cut(s) 65, 146, 284, 530, 965
TaqI TCGA 3 cut(s) 234, 352, 536
TasI AATT 9 cut(s) 131, 260, 555, 571, 604, 613, 702, 731, 820
TatI WGTACW 2 cut(s) 284, 579
Tru1I TTAA 6 cut(s) 303, 390, 494, 726, 734, 973
Tru9I TTAA 6 cut(s) 303, 390, 494, 726, 734, 973
TscAI CASTG 1 cut(s) 644
TseFI GTSAC 3 cut(s) 278, 376, 772
TseI GCWGC 4 cut(s) 473, 597, 715, 789
Tsp45I GTSAC 3 cut(s) 278, 376, 772
TspDTI ATGAA 7 cut(s) 17, 65, 129, 231, 385, 861, 960
TspRI CASTG 1 cut(s) 644
Vha464I CTTAAG 1 cut(s) 725
VspI ATTAAT 1 cut(s) 734
XapI RAATTY 3 cut(s) 260, 571, 613
XbaI TCTAGA 1 cut(s) 904
XspI CTAG 1 cut(s) 905
ZrmI AGTACT 1 cut(s) 581
Zsp2I ATGCAT 1 cut(s) 751
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.