Prupe.1G012700_v2.0.a1

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000637
Physical Location & Seq
Forward (+)
964699 .. 966234
1536 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G012700.1

Sequence Viewer

Length: 936 bp
ATGGACGAACGAAGATGGGAGGACTTACAAATGGACTGCTTGGTCAAAGTGTTGGTGAAAGTTGGACTGGAGTCACTGCTTTTGGATGTCCCTTTTGTGTGCAAGTCATGGTACATGCCGACCCTCAATCCTTCATGCTGGCAATCTCTCATTTTCCCGGACAACGAATGTATTGAAGTCTGGCCTTGGGATGTGTCTGAATGTCCAAATTTTCAAAATCTTATGGACAGATTTGCGAGTGAGTATCAAATTGATGGGGATCGTTGCTCTGTCACCGCTTTTCTAAAGTTTGTGATCAATCGGAGCAGCGGAAATGCTACTGTGCTCAAGCTTCCCAAATGCTGCACAGTAGAAGCCTTTGAATTTGCTGCAAATGCGTGTCCTGGCCTTGTGACTTTGAGTTTACCAGGAGATGTATTGGACAACAAACACACAAACCTAGAGCTGATTGGCAATTGGAAAAATTTGGAGGTGTTATCATTGGGTTCATGCTTAAATTTGGCGAAAATACTTGTAATTATACAAACACATTGCAAGAATTTGTATGGTTTAGATTTGTCCAAAGGCTCTGTTCATGGACGTGAGGCATTGTCAATTGTGAAGTTGGTGCCTAATATCAAGTACTTAAATTTGAAGGGTGCAAAAGTAAGACGGGATAGTCTTGTCACGTTGCTGTGCGGATGCAAAGATCTAGTGATGTTGGACGCCAGAGATTGTTCTGGTTTCAATGAGAACGACGATGAATTATCAAAGCTTGCGTCTCATATTAGTAAATTTATGTGCGAGGGTTCTGAATTTCCTGAATTTCTTTGTGGTATGGACAATTTTGTTCTTCCTGTTGTTGGATACTCATTTCAACAACTTGTGGAGGAGAATTGGGATGAAATGCTCAATGATTTGCGCGATGCGTTCAACGATTTGAGTGACGAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

312

Amino Acids

35.09

Weight (kDa)

4.64

Isoelectric Point (pI)

42.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000637)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13771 FvH4_4g13861 FvH4_4g13862 FvH4_4g13890 FvH4_4g13890 FvH4_4g13890 FvH4_4g13901
malus_domestica MD04G1010000.v1.1
prunus_persica Prupe.1G009600_v2.0.a1 Prupe.1G010100_v2.0.a1 Prupe.1G012400_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G157400_v2.0.a1 Prupe.1G157500_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.2G138900_v2.0.a1 Prupe.6G053000_v2.0.a1
pyrus_communis pycom04g00810
rosa_chinensis RchiOBHm_Chr4g0414621 RchiOBHm_Chr4g0414631 RchiOBHm_Chr4g0414641 RchiOBHm_Chr4g0415011 RchiOBHm_Chr4g0415031
rosa_laevigata RLG00000008101 RLG00000008104 RLG00000008138 RLG00000008139 RLG00000008140 RLG00000008354
rosa_multiflora Rmu_co8247483.1_g000001 Rmu_sc0003611.1_g000009 Rmu_sc0003611.1_g000014 Rmu_sc0007034.1_g000033 Rmu_sc0007391.1_g000006 Rmu_sc0011778.1_g000017 Rmu_sc0016172.1_g000002
rosa_roxburghii Rroxscaffold_5G00358400 Rroxscaffold_5G00358430 Rroxscaffold_5G00358610 Rroxscaffold_5G00358740 Rroxscaffold_5G00358750 Rroxscaffold_5G00358770
rosa_rugosa Rorug04G0108700 Rorug04G0128400 Rorug04G0128500 Rorug04G0128900 Rorug04G0129000 Rorug04G0129100 Rorug04G0131400 Rorug04G0131500 Rorug04G0131600 Rorug04G0131800 Rorug04G0131900
rosa_samantha Rh4AG187100 Rh4AG187200 Rh4AG190700 Rh4AG191200 Rh4BG185800 Rh4BG186100 Rh4BG188700 Rh4BG188900 Rh4BG189300 Rh4CG199200 Rh4CG199700 Rh4CG201900 Rh4CG202100 Rh4DG185400 Rh4DG185700 Rh4DG189300 Rh4DG189700 Rh6CG237600
rosa_wichuraiana Rw4G015970 Rw4G016000 Rw4G016240 Rw4G016260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 41, 657
AccB1I GGYRCC 1 cut(s) 607
AccII CGCG 1 cut(s) 903
AciI CCGC 3 cut(s) 276, 309, 678
AclWI GGATC 1 cut(s) 267
AcsI RAATTY 9 cut(s) 208, 362, 463, 496, 538, 628, 773, 794, 803
AcyI GRCGYC 1 cut(s) 705
AfaI GTAC 2 cut(s) 113, 623
AfiI CCNNNNNNNGG 1 cut(s) 842
AgsI TTSAA 7 cut(s) 176, 215, 362, 634, 727, 857, 913
AjiI CACGTC 1 cut(s) 581
AjnI CCWGG 2 cut(s) 382, 406
AluBI AGCT 3 cut(s) 331, 445, 754
AluI AGCT 3 cut(s) 331, 445, 754
Alw21I GWGCWC 1 cut(s) 327
Alw26I GTCTC 1 cut(s) 765
AlwI GGATC 1 cut(s) 267
AoxI GGCC 2 cut(s) 182, 385
ApeKI GCWGC 3 cut(s) 306, 342, 368
ApoI RAATTY 9 cut(s) 208, 362, 463, 496, 538, 628, 773, 794, 803
ArsI GACNNNNNNTTYG 2 cut(s) 743, 775
AspLEI GCGC 1 cut(s) 903
AsuC2I CCSGG 1 cut(s) 158
AsuHPI GGTGA 2 cut(s) 67, 265
BanI GGYRCC 1 cut(s) 607
Bbv12I GWGCWC 1 cut(s) 327
BbvI GCAGC 3 cut(s) 318, 329, 355
BccI CCATC 2 cut(s) 9, 248
BciT130I CCWGG 2 cut(s) 384, 408
BciVI GTATCC 1 cut(s) 839
BclI TGATCA 1 cut(s) 294
BcnI CCSGG 1 cut(s) 158
BcoDI GTCTC 1 cut(s) 765
BfaI CTAG 2 cut(s) 440, 692
BfuI GTATCC 1 cut(s) 839
BglII AGATCT 1 cut(s) 688
BisI GCNGC 3 cut(s) 307, 343, 369
BlsI GCNGC 3 cut(s) 308, 344, 370
BmcAI AGTACT 1 cut(s) 623
Bme1390I CCNGG 3 cut(s) 158, 384, 408
BmgBI CACGTC 1 cut(s) 581
BmiI GGNNCC 1 cut(s) 609
BmrFI CCNGG 3 cut(s) 158, 384, 408
BmsI GCATC 2 cut(s) 671, 895
BoxI GACNNNNGTC 1 cut(s) 70
BpmI CTGGAG 1 cut(s) 89
BpuEI CTTGAG 1 cut(s) 311
BpuMI CCSGG 1 cut(s) 158
BsaBI GATNNNNATC 1 cut(s) 258
BsaHI GRCGYC 1 cut(s) 705
BsaJI CCNNGG 1 cut(s) 185
Bsc4I CCNNNNNNNGG 1 cut(s) 842
Bse1I ACTGG 1 cut(s) 72
Bse3DI GCAATG 1 cut(s) 529
Bse8I GATNNNNATC 1 cut(s) 258
BseBI CCWGG 2 cut(s) 384, 408
BseDI CCNNGG 1 cut(s) 185
BseGI GGATG 4 cut(s) 91, 196, 686, 886
BseJI GATNNNNATC 1 cut(s) 258
BseLI CCNNNNNNNGG 1 cut(s) 842
BseMI GCAATG 1 cut(s) 529
BseNI ACTGG 1 cut(s) 72
BseRI GAGGAG 1 cut(s) 884
BseXI GCAGC 3 cut(s) 318, 329, 355
BsgI GTGCAG 1 cut(s) 328
Bsh1236I CGCG 1 cut(s) 903
BshFI GGCC 2 cut(s) 184, 387
BshNI GGYRCC 1 cut(s) 607
BsiHKAI GWGCWC 1 cut(s) 327
BsiSI CCGG 1 cut(s) 158
BslFI GGGAC 1 cut(s) 74
BslI CCNNNNNNNGG 1 cut(s) 842
BsmAI GTCTC 1 cut(s) 765
BsmBI CGTCTC 1 cut(s) 765
BsmFI GGGAC 1 cut(s) 74
BsnI GGCC 2 cut(s) 184, 387
Bsp1286I GDGCHC 1 cut(s) 327
Bsp143I GATC 3 cut(s) 259, 294, 688
BspACI CCGC 3 cut(s) 276, 309, 678
BspANI GGCC 2 cut(s) 184, 387
BspFNI CGCG 1 cut(s) 903
BspLI GGNNCC 1 cut(s) 609
BspPI GGATC 1 cut(s) 267
BspT107I GGYRCC 1 cut(s) 607
BsrDI GCAATG 1 cut(s) 529
BsrI ACTGG 1 cut(s) 72
BssECI CCNNGG 1 cut(s) 185
BssMI GATC 3 cut(s) 259, 294, 688
BssNI GRCGYC 1 cut(s) 705
BssT1I CCWWGG 1 cut(s) 185
Bst2UI CCWGG 2 cut(s) 384, 408
Bst4CI ACNGT 2 cut(s) 322, 349
BstACI GRCGYC 1 cut(s) 705
BstC8I GCNNGC 2 cut(s) 140, 756
BstF5I GGATG 4 cut(s) 91, 196, 686, 886
BstFNI CGCG 1 cut(s) 903
BstHHI GCGC 1 cut(s) 903
BstKTI GATC 3 cut(s) 262, 297, 691
BstMAI GTCTC 1 cut(s) 765
BstMBI GATC 3 cut(s) 259, 294, 688
BstMWI GCNNNNNNNGC 1 cut(s) 374
BstNI CCWGG 2 cut(s) 384, 408
BstNSI RCATGY 1 cut(s) 118
BstPAI GACNNNNGTC 1 cut(s) 70
BstSCI CCNGG 3 cut(s) 156, 382, 406
BstUI CGCG 1 cut(s) 903
BstV1I GCAGC 3 cut(s) 318, 329, 355
BstX2I RGATCY 1 cut(s) 688
BstYI RGATCY 1 cut(s) 688
BsuI GTATCC 1 cut(s) 839
BsuRI GGCC 2 cut(s) 184, 387
BtgZI GCGATG 1 cut(s) 918
BtrI CACGTC 1 cut(s) 581
BtsCI GGATG 4 cut(s) 91, 196, 686, 886
BtsI GCAGTG 1 cut(s) 74
BtsIMutI CAGTG 1 cut(s) 74
Cac8I GCNNGC 2 cut(s) 140, 756
CfoI GCGC 1 cut(s) 903
CseI GACGC 2 cut(s) 713, 747
Csp6I GTAC 2 cut(s) 112, 622
CviAII CATG 5 cut(s) 108, 115, 135, 489, 575
CviJI RGCY 7 cut(s) 184, 331, 356, 387, 445, 567, 754
CviKI_1 RGCY 7 cut(s) 184, 331, 356, 387, 445, 567, 754
CviQI GTAC 2 cut(s) 112, 622
DpnI GATC 3 cut(s) 261, 296, 690
DpnII GATC 3 cut(s) 259, 294, 688
DrdI GACNNNNNNGTC 2 cut(s) 41, 657
DseDI GACNNNNNNGTC 2 cut(s) 41, 657
Eco130I CCWWGG 1 cut(s) 185
EcoRII CCWGG 2 cut(s) 382, 406
EcoT14I CCWWGG 1 cut(s) 185
ErhI CCWWGG 1 cut(s) 185
Esp3I CGTCTC 1 cut(s) 765
FaeI CATG 5 cut(s) 111, 118, 138, 492, 578
FaqI GGGAC 1 cut(s) 74
FatI CATG 5 cut(s) 107, 114, 134, 488, 574
FbaI TGATCA 1 cut(s) 294
Fnu4HI GCNGC 3 cut(s) 307, 343, 369
FokI GGATG 4 cut(s) 98, 203, 693, 893
Fsp4HI GCNGC 3 cut(s) 307, 343, 369
FspBI CTAG 2 cut(s) 440, 692
GlaI GCGC 1 cut(s) 902
GluI GCNGC 3 cut(s) 307, 343, 369
GsuI CTGGAG 1 cut(s) 89
HaeIII GGCC 2 cut(s) 184, 387
HapII CCGG 1 cut(s) 158
HgaI GACGC 2 cut(s) 713, 747
HhaI GCGC 1 cut(s) 903
Hin1I GRCGYC 1 cut(s) 705
Hin1II CATG 5 cut(s) 111, 118, 138, 492, 578
Hin6I GCGC 1 cut(s) 901
HinP1I GCGC 1 cut(s) 901
HindIII AAGCTT 2 cut(s) 329, 752
HinfI GANTC 1 cut(s) 71
HpaII CCGG 1 cut(s) 158
HphI GGTGA 2 cut(s) 67, 265
Hpy166II GTNNAC 1 cut(s) 404
Hpy188I TCNGA 3 cut(s) 199, 303, 793
Hpy188III TCNNGA 1 cut(s) 800
Hpy8I GTNNAC 1 cut(s) 404
Hpy99I CGWCG 1 cut(s) 740
HpyAV CCTTC 2 cut(s) 141, 628
HpyCH4III ACNGT 2 cut(s) 322, 349
HpyCH4IV ACGT 2 cut(s) 580, 668
HpyCH4V TGCA 6 cut(s) 102, 345, 371, 534, 641, 684
HpyF10VI GCNNNNNNNGC 1 cut(s) 374
HpySE526I ACGT 2 cut(s) 580, 668
Hsp92I GRCGYC 1 cut(s) 705
Hsp92II CATG 5 cut(s) 111, 118, 138, 492, 578
HspAI GCGC 1 cut(s) 901
Ksp22I TGATCA 1 cut(s) 294
Kzo9I GATC 3 cut(s) 259, 294, 688
LmnI GCTCC 1 cut(s) 303
Lsp1109I GCAGC 3 cut(s) 318, 329, 355
LweI GCATC 2 cut(s) 671, 895
MaeI CTAG 2 cut(s) 440, 692
MaeII ACGT 2 cut(s) 580, 668
MaeIII GTNAC 5 cut(s) 72, 271, 391, 664, 923
MalI GATC 3 cut(s) 261, 296, 690
MboI GATC 3 cut(s) 259, 294, 688
MboII GAAGA 2 cut(s) 24, 824
MfeI CAATTG 2 cut(s) 454, 594
MflI RGATCY 1 cut(s) 688
MhlI GDGCHC 1 cut(s) 327
MlyI GAGTC 1 cut(s) 80
MmeI TCCRAC 3 cut(s) 43, 681, 823
MnlI CCTC 7 cut(s) 13, 134, 463, 577, 778, 862, 922
MseI TTAA 2 cut(s) 494, 626
MslI CAYNNNNRTG 1 cut(s) 579
MspA1I CMGCKG 1 cut(s) 309
MspI CCGG 1 cut(s) 158
MspR9I CCNGG 3 cut(s) 158, 384, 408
MunI CAATTG 2 cut(s) 454, 594
MvaI CCWGG 2 cut(s) 384, 408
MvnI CGCG 1 cut(s) 903
MwoI GCNNNNNNNGC 1 cut(s) 374
NciI CCSGG 1 cut(s) 158
NdeII GATC 3 cut(s) 259, 294, 688
NlaIII CATG 5 cut(s) 111, 118, 138, 492, 578
NlaIV GGNNCC 1 cut(s) 609
NmuCI GTSAC 5 cut(s) 72, 271, 391, 664, 923
NspI RCATGY 1 cut(s) 118
PfoI TCCNGGA 1 cut(s) 156
PkrI GCNGC 3 cut(s) 308, 344, 370
PleI GAGTC 1 cut(s) 79
PpsI GAGTC 1 cut(s) 79
PshAI GACNNNNGTC 1 cut(s) 70
Psp6I CCWGG 2 cut(s) 382, 406
PspGI CCWGG 2 cut(s) 382, 406
PspN4I GGNNCC 1 cut(s) 609
PsuI RGATCY 1 cut(s) 688
RsaI GTAC 2 cut(s) 113, 623
RsaNI GTAC 2 cut(s) 112, 622
RseI CAYNNNNRTG 1 cut(s) 579
SaqAI TTAA 2 cut(s) 494, 626
SatI GCNGC 3 cut(s) 307, 343, 369
Sau3AI GATC 3 cut(s) 259, 294, 688
ScaI AGTACT 1 cut(s) 623
SchI GAGTC 1 cut(s) 80
ScrFI CCNGG 3 cut(s) 158, 384, 408
SduI GDGCHC 1 cut(s) 327
SetI ASST 7 cut(s) 333, 441, 447, 474, 583, 671, 756
SfaNI GCATC 2 cut(s) 671, 895
SmiMI CAYNNNNRTG 1 cut(s) 579
SmlI CTYRAG 1 cut(s) 326
SmoI CTYRAG 1 cut(s) 326
SsiI CCGC 3 cut(s) 276, 309, 678
SspMI CTAG 2 cut(s) 440, 692
StyD4I CCNGG 3 cut(s) 156, 382, 406
StyI CCWWGG 1 cut(s) 185
TaaI ACNGT 2 cut(s) 322, 349
TaiI ACGT 2 cut(s) 583, 671
TatI WGTACW 1 cut(s) 621
Tru1I TTAA 2 cut(s) 494, 626
Tru9I TTAA 2 cut(s) 494, 626
TscAI CASTG 1 cut(s) 81
TseFI GTSAC 5 cut(s) 72, 271, 391, 664, 923
TseI GCWGC 3 cut(s) 306, 342, 368
Tsp45I GTSAC 5 cut(s) 72, 271, 391, 664, 923
TspDTI ATGAA 5 cut(s) 123, 477, 563, 756, 897
TspRI CASTG 1 cut(s) 81
XapI RAATTY 9 cut(s) 208, 362, 463, 496, 538, 628, 773, 794, 803
XceI RCATGY 1 cut(s) 118
XspI CTAG 2 cut(s) 440, 692
ZrmI AGTACT 1 cut(s) 623
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.