Rh4BG186100

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000637
Physical Location & Seq
Reverse (-)
32522102 .. 32523715
1614 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG186100.1

Sequence Viewer

Length: 1068 bp
ATGTTCGTAGGTGAAAGCATTTTCTTTAGTGATGGGTTTGTCGACTCGCTTGTGACAGGTCTTTTACCCTATTGGCTTGAGATACCAATAAATGAAGATGCTGGTAAAACTTCATATATATTTGATGATTTTCCAAGCACAGAAGCACAAAAACCGTTCCCGGAAGATCACCGAGCACAAAATACTTGTTACGAGATGGAAGACGAACGAAGATGGGAGGAATTAGAGGTTGACTGTTTGGTGAATATATTTGGAAGAGTGGGAATGGAGTCATTGCTTTTGGATGTCCCTTTCGTATGCAAGTCATGGTACAGAGCAACCCTCAACCCTTCATGCTGGCAATATCTCATATTTCCTGATGATCTAAGTGATCGTACTTTTAGTTTTGACCTTGAAGATATACATTGGTGTACCCTTATTCAAAGATTTATAGATGAGTATCGACTTGATAAGAGCCGTTTCTCGGTGACTGCATTTGTTGAGTTTATAATCAGTCGTAGCAAAGGAAAGGCTATTTATCTCAGGCTATCCCCATGTGCTTCAGAAGATGTCTTGAAATATGCTGCAGATGAGTGTCCTGCGTTAAAGCTTCTTGCATTGCCCAGCCGTTTAGTGAACCGTAAGTCGAGCATAATTCAAGAAATAATTGGAAAGTGGACAAATTTGGAGTACTTGGTATTGGGAAGCAGCTATAATTTGGAGAACTTCCTTGGACAGATCTCCATTCACTGCAAGAACTTGTGTCTTTTGAATGTGGCTAATGCAAACATTGGGAAAGATAAAGCAATGGCAATTGTCAGCTTGCTGCCTAAGCTTAAGCAATTGATCTTGAAGAATGCAAATATTGATCGGGGTGCTCTTGTGACGCTACTGCAGGGCTTCAACGAGCTTGAGCGTTTGGATGTCAGCAATTGTATAGGTTTTGATGAGGGAGATGAAGAAATAGCAAAGCTTGCTTCTCATATTGCTAATTTCATCTCTGGGGGTTCTACACTATTTGATTATGATGATTACGATGACGGACATATTTCCCATGATGAAATGGTTTATGGATATGGTTCCGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

355

Amino Acids

40.39

Weight (kDa)

4.59

Isoelectric Point (pI)

42.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000637)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13771 FvH4_4g13861 FvH4_4g13862 FvH4_4g13890 FvH4_4g13890 FvH4_4g13890 FvH4_4g13901
malus_domestica MD04G1010000.v1.1
prunus_persica Prupe.1G009600_v2.0.a1 Prupe.1G010100_v2.0.a1 Prupe.1G012400_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G157400_v2.0.a1 Prupe.1G157500_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.2G138900_v2.0.a1 Prupe.6G053000_v2.0.a1
pyrus_communis pycom04g00810
rosa_chinensis RchiOBHm_Chr4g0414621 RchiOBHm_Chr4g0414631 RchiOBHm_Chr4g0414641 RchiOBHm_Chr4g0415011 RchiOBHm_Chr4g0415031
rosa_laevigata RLG00000008101 RLG00000008104 RLG00000008138 RLG00000008139 RLG00000008140 RLG00000008354
rosa_multiflora Rmu_co8247483.1_g000001 Rmu_sc0003611.1_g000009 Rmu_sc0003611.1_g000014 Rmu_sc0007034.1_g000033 Rmu_sc0007391.1_g000006 Rmu_sc0011778.1_g000017 Rmu_sc0016172.1_g000002
rosa_roxburghii Rroxscaffold_5G00358400 Rroxscaffold_5G00358430 Rroxscaffold_5G00358610 Rroxscaffold_5G00358740 Rroxscaffold_5G00358750 Rroxscaffold_5G00358770
rosa_rugosa Rorug04G0108700 Rorug04G0128400 Rorug04G0128500 Rorug04G0128900 Rorug04G0129000 Rorug04G0129100 Rorug04G0131400 Rorug04G0131500 Rorug04G0131600 Rorug04G0131800 Rorug04G0131900
rosa_samantha Rh4AG187100 Rh4AG187200 Rh4AG190700 Rh4AG191200 Rh4BG185800 Rh4BG186100 Rh4BG188700 Rh4BG188900 Rh4BG189300 Rh4CG199200 Rh4CG199700 Rh4CG201900 Rh4CG202100 Rh4DG185400 Rh4DG185700 Rh4DG189300 Rh4DG189700 Rh6CG237600
rosa_wichuraiana Rw4G015970 Rw4G016000 Rw4G016240 Rw4G016260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 488
AccI GTMKAC 1 cut(s) 42
AcsI RAATTY 1 cut(s) 661
AcuI CTGAAG 1 cut(s) 525
AfaI GTAC 4 cut(s) 311, 376, 412, 671
AfiI CCNNNNNNNGG 1 cut(s) 463
AflII CTTAAG 1 cut(s) 815
AgsI TTSAA 7 cut(s) 395, 422, 556, 638, 751, 832, 883
AluBI AGCT 6 cut(s) 589, 690, 801, 814, 889, 952
AluI AGCT 6 cut(s) 589, 690, 801, 814, 889, 952
Alw21I GWGCWC 2 cut(s) 178, 859
ApeKI GCWGC 3 cut(s) 563, 687, 805
ApoI RAATTY 1 cut(s) 661
AsuC2I CCSGG 1 cut(s) 161
AsuHPI GGTGA 4 cut(s) 23, 161, 253, 478
BbsI GAAGAC 1 cut(s) 207
Bbv12I GWGCWC 2 cut(s) 178, 859
BbvI GCAGC 3 cut(s) 550, 699, 792
BccI CCATC 3 cut(s) 26, 190, 207
BceAI ACGGC 2 cut(s) 441, 591
BcnI CCSGG 1 cut(s) 161
BfmI CTRYAG 2 cut(s) 564, 872
BfrI CTTAAG 1 cut(s) 815
BglII AGATCT 1 cut(s) 717
BisI GCNGC 3 cut(s) 564, 688, 806
BlsI GCNGC 3 cut(s) 565, 689, 807
BmcAI AGTACT 1 cut(s) 671
Bme1390I CCNGG 1 cut(s) 161
BmiI GGNNCC 1 cut(s) 1060
BmrFI CCNGG 1 cut(s) 161
BmsI GCATC 1 cut(s) 88
BpiI GAAGAC 1 cut(s) 207
BplI GAGNNNNNCTC 2 cut(s) 306, 338
Bpu10I CCTNAGC 1 cut(s) 810
BpuEI CTTGAG 2 cut(s) 98, 911
BpuMI CCSGG 1 cut(s) 161
BsaBI GATNNNNATC 1 cut(s) 438
BsaJI CCNNGG 1 cut(s) 709
Bsc4I CCNNNNNNNGG 1 cut(s) 463
Bse3DI GCAATG 3 cut(s) 272, 596, 792
Bse8I GATNNNNATC 1 cut(s) 438
BseDI CCNNGG 1 cut(s) 709
BseGI GGATG 2 cut(s) 289, 907
BseJI GATNNNNATC 1 cut(s) 438
BseLI CCNNNNNNNGG 1 cut(s) 463
BseMI GCAATG 3 cut(s) 272, 596, 792
BseMII CTCAG 1 cut(s) 535
BseXI GCAGC 3 cut(s) 550, 699, 792
BseYI CCCAGC 1 cut(s) 602
BsiHKAI GWGCWC 2 cut(s) 178, 859
BsiSI CCGG 1 cut(s) 161
BslFI GGGAC 1 cut(s) 272
BslI CCNNNNNNNGG 1 cut(s) 463
BsmFI GGGAC 1 cut(s) 272
BsmI GAATGC 1 cut(s) 841
Bsp1286I GDGCHC 2 cut(s) 178, 859
Bsp143I GATC 6 cut(s) 166, 361, 370, 717, 825, 847
BspCNI CTCAG 1 cut(s) 534
BspLI GGNNCC 1 cut(s) 1060
BspMAI CTGCAG 2 cut(s) 568, 876
BspTI CTTAAG 1 cut(s) 815
BsrDI GCAATG 3 cut(s) 272, 596, 792
BssECI CCNNGG 1 cut(s) 709
BssMI GATC 6 cut(s) 166, 361, 370, 717, 825, 847
BssT1I CCWWGG 1 cut(s) 709
Bst4CI ACNGT 3 cut(s) 156, 236, 620
Bst6I CTCTTC 1 cut(s) 250
BstAFI CTTAAG 1 cut(s) 815
BstAPI GCANNNNNTGC 1 cut(s) 953
BstC8I GCNNGC 3 cut(s) 338, 803, 954
BstDEI CTNAG 3 cut(s) 365, 521, 810
BstF5I GGATG 2 cut(s) 289, 907
BstKTI GATC 6 cut(s) 169, 364, 373, 720, 828, 850
BstMBI GATC 6 cut(s) 166, 361, 370, 717, 825, 847
BstMWI GCNNNNNNNGC 2 cut(s) 811, 953
BstSCI CCNGG 1 cut(s) 159
BstSFI CTRYAG 2 cut(s) 564, 872
BstV1I GCAGC 3 cut(s) 550, 699, 792
BstV2I GAAGAC 1 cut(s) 207
BstX2I RGATCY 1 cut(s) 717
BstYI RGATCY 1 cut(s) 717
BtsCI GGATG 2 cut(s) 289, 907
BtsI GCAGTG 1 cut(s) 727
BtsIMutI CAGTG 1 cut(s) 727
Cac8I GCNNGC 3 cut(s) 338, 803, 954
CseI GACGC 1 cut(s) 874
Csp6I GTAC 4 cut(s) 310, 375, 411, 670
CviAII CATG 4 cut(s) 306, 333, 534, 1034
CviQI GTAC 4 cut(s) 310, 375, 411, 670
DdeI CTNAG 3 cut(s) 365, 521, 810
DpnI GATC 6 cut(s) 168, 363, 372, 719, 827, 849
DpnII GATC 6 cut(s) 166, 361, 370, 717, 825, 847
Eam1104I CTCTTC 1 cut(s) 250
EarI CTCTTC 1 cut(s) 250
Eco130I CCWWGG 1 cut(s) 709
Eco57I CTGAAG 1 cut(s) 525
EcoT14I CCWWGG 1 cut(s) 709
ErhI CCWWGG 1 cut(s) 709
FaeI CATG 4 cut(s) 309, 336, 537, 1037
FaqI GGGAC 1 cut(s) 272
FatI CATG 4 cut(s) 305, 332, 533, 1033
FblI GTMKAC 1 cut(s) 42
Fnu4HI GCNGC 3 cut(s) 564, 688, 806
FokI GGATG 2 cut(s) 296, 914
Fsp4HI GCNGC 3 cut(s) 564, 688, 806
GluI GCNGC 3 cut(s) 564, 688, 806
GsaI CCCAGC 1 cut(s) 606
HapII CCGG 1 cut(s) 161
HgaI GACGC 1 cut(s) 874
Hin1II CATG 4 cut(s) 309, 336, 537, 1037
HincII GTYRAC 2 cut(s) 43, 232
HindII GTYRAC 2 cut(s) 43, 232
HindIII AAGCTT 3 cut(s) 587, 812, 950
HinfI GANTC 2 cut(s) 44, 269
HpaII CCGG 1 cut(s) 161
HphI GGTGA 4 cut(s) 23, 161, 253, 478
Hpy166II GTNNAC 5 cut(s) 43, 232, 411, 616, 657
Hpy188I TCNGA 2 cut(s) 544, 1063
Hpy188III TCNNGA 4 cut(s) 356, 553, 638, 829
Hpy8I GTNNAC 5 cut(s) 43, 232, 411, 616, 657
HpyAV CCTTC 1 cut(s) 339
HpyCH4III ACNGT 3 cut(s) 156, 236, 620
HpyCH4V TGCA 8 cut(s) 300, 473, 566, 596, 732, 764, 839, 874
HpyF10VI GCNNNNNNNGC 2 cut(s) 811, 953
HpyF3I CTNAG 3 cut(s) 365, 521, 810
Hsp92II CATG 4 cut(s) 309, 336, 537, 1037
Kzo9I GATC 6 cut(s) 166, 361, 370, 717, 825, 847
Lsp1109I GCAGC 3 cut(s) 550, 699, 792
LweI GCATC 1 cut(s) 88
MaeIII GTNAC 4 cut(s) 52, 188, 466, 862
MalI GATC 6 cut(s) 168, 363, 372, 719, 827, 849
MboI GATC 6 cut(s) 166, 361, 370, 717, 825, 847
MboII GAAGA 9 cut(s) 107, 176, 212, 222, 267, 407, 557, 844, 950
MfeI CAATTG 3 cut(s) 792, 821, 910
MflI RGATCY 1 cut(s) 717
MhlI GDGCHC 2 cut(s) 178, 859
MluCI AATT 9 cut(s) 221, 633, 645, 661, 694, 792, 821, 910, 970
MlyI GAGTC 2 cut(s) 38, 278
MnlI CCTC 4 cut(s) 211, 220, 332, 922
MseI TTAA 3 cut(s) 584, 816, 1066
MspCI CTTAAG 1 cut(s) 815
MspI CCGG 1 cut(s) 161
MspR9I CCNGG 1 cut(s) 161
MunI CAATTG 3 cut(s) 792, 821, 910
Mva1269I GAATGC 1 cut(s) 841
MwoI GCNNNNNNNGC 2 cut(s) 811, 953
NciI CCSGG 1 cut(s) 161
NdeII GATC 6 cut(s) 166, 361, 370, 717, 825, 847
NlaIII CATG 4 cut(s) 309, 336, 537, 1037
NlaIV GGNNCC 1 cut(s) 1060
NmuCI GTSAC 3 cut(s) 52, 466, 862
PctI GAATGC 1 cut(s) 841
PfoI TCCNGGA 1 cut(s) 159
PkrI GCNGC 3 cut(s) 565, 689, 807
PleI GAGTC 2 cut(s) 38, 277
PpsI GAGTC 2 cut(s) 38, 277
PsiI TTATAA 1 cut(s) 488
PspFI CCCAGC 1 cut(s) 602
PspN4I GGNNCC 1 cut(s) 1060
PstI CTGCAG 2 cut(s) 568, 876
PsuI RGATCY 1 cut(s) 717
RsaI GTAC 4 cut(s) 311, 376, 412, 671
RsaNI GTAC 4 cut(s) 310, 375, 411, 670
SalI GTCGAC 1 cut(s) 41
SaqAI TTAA 3 cut(s) 584, 816, 1066
SatI GCNGC 3 cut(s) 564, 688, 806
Sau3AI GATC 6 cut(s) 166, 361, 370, 717, 825, 847
ScaI AGTACT 1 cut(s) 671
SchI GAGTC 2 cut(s) 38, 278
ScrFI CCNGG 1 cut(s) 161
SduI GDGCHC 2 cut(s) 178, 859
SfaNI GCATC 1 cut(s) 88
SfcI CTRYAG 2 cut(s) 564, 872
SmlI CTYRAG 3 cut(s) 77, 815, 890
SmoI CTYRAG 3 cut(s) 77, 815, 890
Sse9I AATT 9 cut(s) 221, 633, 645, 661, 694, 792, 821, 910, 970
SspI AATATT 1 cut(s) 844
StyD4I CCNGG 1 cut(s) 159
StyI CCWWGG 1 cut(s) 709
TaaI ACNGT 3 cut(s) 156, 236, 620
TaqI TCGA 3 cut(s) 42, 442, 626
TasI AATT 9 cut(s) 221, 633, 645, 661, 694, 792, 821, 910, 970
TatI WGTACW 1 cut(s) 669
Tru1I TTAA 3 cut(s) 584, 816, 1066
Tru9I TTAA 3 cut(s) 584, 816, 1066
TscAI CASTG 1 cut(s) 734
TseFI GTSAC 3 cut(s) 52, 466, 862
TseI GCWGC 3 cut(s) 563, 687, 805
Tsp45I GTSAC 3 cut(s) 52, 466, 862
TspDTI ATGAA 6 cut(s) 102, 108, 321, 951, 964, 1053
TspGWI ACGGA 1 cut(s) 1035
TspRI CASTG 1 cut(s) 734
Vha464I CTTAAG 1 cut(s) 815
XapI RAATTY 1 cut(s) 661
XmiI GTMKAC 1 cut(s) 42
ZrmI AGTACT 1 cut(s) 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.