Rroxscaffold_5G00358770

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000637
Physical Location & Seq
Forward (+)
38905795 .. 38908185
2391 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00358770.1

Sequence Viewer

Length: 948 bp
ATGGATCAACGAAGATGGGAGGACTTAGATAAGGACTGTTTGGTGAAAGTGTTTGAGAAAGTTGATATGGAGTCACTACTCTTGGATATTCCTTTTGTGTGCAAGTCATGGCACAAAGAAACACTAAATCCTTCTTGCTGGAAAAGTCTTATCTTTCCGGAATTTGAACCTGAATTTCCTTATGAATTTGATTATCCAATCTATGAAAGATTTGTTTCTGAATTTGGCCTTGATAGGAATCGTGTCTCCGAAACTGCCTTTATAAAGTTTGTTGTCAATCGTAGCCAGGGAAATGCTGTTTTTCTCAAGCTACCTGGATGCTCTACCGTAGAAGCCTTTGAATATGTTGCAGATGCGTGCCCTAACCTTGTGATTTTGGGTTTACCAAGATGTTTGTTGTGGAAAGAAGACATCGATCTCGAATCGATTGGCAAGTTCAAGTACTTGTATATGTTGTCATTGGGCAGCTGCGATAAATTGGACAGAGTTCTTGCAGTAGTCAGCAAACAATGCAAGTTGCTTTCTCATTTAACACTGTCTAATGCCCAAATTGGTCAAGAAGAGGTTATGGCAATTGTCAACTTAGTCCCTGATATTAAGCGCTTGAGCTTGAATAGGGCACAAATTGATCGGGATAATCTCATCATATTACTGAAGGGCTGCAAAAAACTTTCGTTCTTGGAGGCCAAGGATTGCATTGGTTTCAATGAGGGTGATGATGAAATAGCAGAGCTGGCTTCTCATATCAGTAAATTTCACTGTGAGGGATCTAAAGAGCGCATTGAATTTCCATTTGATATATTTTCTCCTGAATCTTTTTCTCAATTTCTTTCTTCATTAACGGAAGATTCTGTCAAAGAAATGGCTTCAATGTTTGCAGAGGTTGATGAAGAGGCAGAGGTTGATGGCGAGGGAGAGGGTGATATTGAAGAAAGTGTTGAACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

315

Amino Acids

35.98

Weight (kDa)

4.54

Isoelectric Point (pI)

48.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000637)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13771 FvH4_4g13861 FvH4_4g13862 FvH4_4g13890 FvH4_4g13890 FvH4_4g13890 FvH4_4g13901
malus_domestica MD04G1010000.v1.1
prunus_persica Prupe.1G009600_v2.0.a1 Prupe.1G010100_v2.0.a1 Prupe.1G012400_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G157400_v2.0.a1 Prupe.1G157500_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.2G138900_v2.0.a1 Prupe.6G053000_v2.0.a1
pyrus_communis pycom04g00810
rosa_chinensis RchiOBHm_Chr4g0414621 RchiOBHm_Chr4g0414631 RchiOBHm_Chr4g0414641 RchiOBHm_Chr4g0415011 RchiOBHm_Chr4g0415031
rosa_laevigata RLG00000008101 RLG00000008104 RLG00000008138 RLG00000008139 RLG00000008140 RLG00000008354
rosa_multiflora Rmu_co8247483.1_g000001 Rmu_sc0003611.1_g000009 Rmu_sc0003611.1_g000014 Rmu_sc0007034.1_g000033 Rmu_sc0007391.1_g000006 Rmu_sc0011778.1_g000017 Rmu_sc0016172.1_g000002
rosa_roxburghii Rroxscaffold_5G00358400 Rroxscaffold_5G00358430 Rroxscaffold_5G00358610 Rroxscaffold_5G00358740 Rroxscaffold_5G00358750 Rroxscaffold_5G00358770
rosa_rugosa Rorug04G0108700 Rorug04G0128400 Rorug04G0128500 Rorug04G0128900 Rorug04G0129000 Rorug04G0129100 Rorug04G0131400 Rorug04G0131500 Rorug04G0131600 Rorug04G0131800 Rorug04G0131900
rosa_samantha Rh4AG187100 Rh4AG187200 Rh4AG190700 Rh4AG191200 Rh4BG185800 Rh4BG186100 Rh4BG188700 Rh4BG188900 Rh4BG189300 Rh4CG199200 Rh4CG199700 Rh4CG201900 Rh4CG202100 Rh4DG185400 Rh4DG185700 Rh4DG189300 Rh4DG189700 Rh6CG237600
rosa_wichuraiana Rw4G015970 Rw4G016000 Rw4G016240 Rw4G016260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 263
AccIII TCCGGA 1 cut(s) 157
AclWI GGATC 2 cut(s) 12, 775
AcsI RAATTY 6 cut(s) 161, 173, 185, 221, 752, 785
AcuI CTGAAG 1 cut(s) 674
AfaI GTAC 1 cut(s) 443
AfeI AGCGCT 1 cut(s) 602
AgsI TTSAA 9 cut(s) 167, 341, 439, 613, 706, 785, 870, 929, 941
AjnI CCWGG 2 cut(s) 285, 313
AluBI AGCT 4 cut(s) 310, 468, 609, 733
AluI AGCT 4 cut(s) 310, 468, 609, 733
Alw26I GTCTC 1 cut(s) 250
AlwI GGATC 2 cut(s) 12, 775
Aor13HI TCCGGA 1 cut(s) 157
Aor51HI AGCGCT 1 cut(s) 602
AoxI GGCC 2 cut(s) 226, 684
ApeKI GCWGC 3 cut(s) 465, 468, 660
ApoI RAATTY 6 cut(s) 161, 173, 185, 221, 752, 785
AspLEI GCGC 2 cut(s) 603, 780
AsuHPI GGTGA 3 cut(s) 55, 725, 932
BaeGI GKGCMC 2 cut(s) 362, 622
BbsI GAAGAC 1 cut(s) 414
BbvI GCAGC 3 cut(s) 455, 477, 647
BccI CCATC 2 cut(s) 9, 899
BciT130I CCWGG 2 cut(s) 287, 315
BcoDI GTCTC 1 cut(s) 250
BfoI RGCGCY 1 cut(s) 604
BisI GCNGC 3 cut(s) 466, 469, 661
BlsI GCNGC 3 cut(s) 467, 470, 662
BmcAI AGTACT 1 cut(s) 443
Bme1390I CCNGG 2 cut(s) 287, 315
BmrFI CCNGG 2 cut(s) 287, 315
BmsI GCATC 2 cut(s) 308, 343
BpiI GAAGAC 1 cut(s) 414
BpuEI CTTGAG 2 cut(s) 290, 625
Bsa29I ATCGAT 2 cut(s) 414, 425
BsaBI GATNNNNATC 1 cut(s) 237
BsaJI CCNNGG 2 cut(s) 286, 687
BsaWI WCCGGW 1 cut(s) 157
Bse8I GATNNNNATC 1 cut(s) 237
BseAI TCCGGA 1 cut(s) 157
BseBI CCWGG 2 cut(s) 287, 315
BseCI ATCGAT 2 cut(s) 414, 425
BseDI CCNNGG 2 cut(s) 286, 687
BseGI GGATG 1 cut(s) 323
BseJI GATNNNNATC 1 cut(s) 237
BseSI GKGCMC 2 cut(s) 362, 622
BseXI GCAGC 3 cut(s) 455, 477, 647
BshFI GGCC 2 cut(s) 228, 686
BshVI ATCGAT 2 cut(s) 414, 425
BsiSI CCGG 1 cut(s) 158
BslFI GGGAC 1 cut(s) 572
BsmAI GTCTC 1 cut(s) 250
BsmFI GGGAC 1 cut(s) 572
BsnI GGCC 2 cut(s) 228, 686
Bsp1286I GDGCHC 2 cut(s) 362, 622
Bsp13I TCCGGA 1 cut(s) 157
Bsp143I GATC 4 cut(s) 4, 415, 628, 767
BspANI GGCC 2 cut(s) 228, 686
BspDI ATCGAT 2 cut(s) 414, 425
BspEI TCCGGA 1 cut(s) 157
BspPI GGATC 2 cut(s) 12, 775
BssECI CCNNGG 2 cut(s) 286, 687
BssMI GATC 4 cut(s) 4, 415, 628, 767
BssT1I CCWWGG 1 cut(s) 687
Bst2UI CCWGG 2 cut(s) 287, 315
Bst4CI ACNGT 4 cut(s) 38, 328, 537, 761
Bst6I CTCTTC 2 cut(s) 555, 885
BstAPI GCANNNNNTGC 1 cut(s) 510
BstC8I GCNNGC 2 cut(s) 358, 735
BstDEI CTNAG 2 cut(s) 25, 583
BstF5I GGATG 1 cut(s) 323
BstH2I RGCGCY 1 cut(s) 604
BstHHI GCGC 2 cut(s) 603, 780
BstKTI GATC 4 cut(s) 7, 418, 631, 770
BstMAI GTCTC 1 cut(s) 250
BstMBI GATC 4 cut(s) 4, 415, 628, 767
BstMWI GCNNNNNNNGC 2 cut(s) 510, 734
BstNI CCWGG 2 cut(s) 287, 315
BstSCI CCNGG 2 cut(s) 285, 313
BstSLI GKGCMC 2 cut(s) 362, 622
BstV1I GCAGC 3 cut(s) 455, 477, 647
BstV2I GAAGAC 1 cut(s) 414
BstX2I RGATCY 1 cut(s) 767
BstYI RGATCY 1 cut(s) 767
Bsu15I ATCGAT 2 cut(s) 414, 425
BsuRI GGCC 2 cut(s) 228, 686
BsuTUI ATCGAT 2 cut(s) 414, 425
BtsCI GGATG 1 cut(s) 323
BtsIMutI CAGTG 2 cut(s) 533, 757
Cac8I GCNNGC 2 cut(s) 358, 735
CfoI GCGC 2 cut(s) 603, 780
ClaI ATCGAT 2 cut(s) 414, 425
Csp6I GTAC 1 cut(s) 442
CviAII CATG 1 cut(s) 108
CviQI GTAC 1 cut(s) 442
DdeI CTNAG 2 cut(s) 25, 583
DpnI GATC 4 cut(s) 6, 417, 630, 769
DpnII GATC 4 cut(s) 4, 415, 628, 767
Eam1104I CTCTTC 2 cut(s) 555, 885
EarI CTCTTC 2 cut(s) 555, 885
Eco130I CCWWGG 1 cut(s) 687
Eco47III AGCGCT 1 cut(s) 602
Eco57I CTGAAG 1 cut(s) 674
EcoRII CCWGG 2 cut(s) 285, 313
EcoT14I CCWWGG 1 cut(s) 687
ErhI CCWWGG 1 cut(s) 687
FaeI CATG 1 cut(s) 111
FaqI GGGAC 1 cut(s) 572
FatI CATG 1 cut(s) 107
Fnu4HI GCNGC 3 cut(s) 466, 469, 661
FokI GGATG 1 cut(s) 330
Fsp4HI GCNGC 3 cut(s) 466, 469, 661
GlaI GCGC 2 cut(s) 602, 779
GluI GCNGC 3 cut(s) 466, 469, 661
HaeII RGCGCY 1 cut(s) 604
HaeIII GGCC 2 cut(s) 228, 686
HapII CCGG 1 cut(s) 158
HhaI GCGC 2 cut(s) 603, 780
Hin1II CATG 1 cut(s) 111
Hin6I GCGC 2 cut(s) 601, 778
HinP1I GCGC 2 cut(s) 601, 778
HincII GTYRAC 1 cut(s) 580
HindII GTYRAC 1 cut(s) 580
HinfI GANTC 5 cut(s) 71, 238, 422, 812, 848
HpaII CCGG 1 cut(s) 158
HphI GGTGA 3 cut(s) 55, 725, 932
Hpy166II GTNNAC 2 cut(s) 383, 580
Hpy188I TCNGA 2 cut(s) 220, 250
Hpy188III TCNNGA 5 cut(s) 158, 419, 557, 632, 809
Hpy8I GTNNAC 2 cut(s) 383, 580
HpyAV CCTTC 2 cut(s) 141, 649
HpyCH4III ACNGT 4 cut(s) 38, 328, 537, 761
HpyCH4V TGCA 7 cut(s) 102, 350, 494, 513, 663, 696, 878
HpyF10VI GCNNNNNNNGC 2 cut(s) 510, 734
HpyF3I CTNAG 2 cut(s) 25, 583
Hsp92II CATG 1 cut(s) 111
HspAI GCGC 2 cut(s) 601, 778
Kpn2I TCCGGA 1 cut(s) 157
Kzo9I GATC 4 cut(s) 4, 415, 628, 767
Lsp1109I GCAGC 3 cut(s) 455, 477, 647
LweI GCATC 2 cut(s) 308, 343
MaeIII GTNAC 1 cut(s) 72
MalI GATC 4 cut(s) 6, 417, 630, 769
MboI GATC 4 cut(s) 4, 415, 628, 767
MboII GAAGA 7 cut(s) 24, 419, 572, 825, 857, 902, 941
MfeI CAATTG 1 cut(s) 573
MflI RGATCY 1 cut(s) 767
MhlI GDGCHC 2 cut(s) 362, 622
MlyI GAGTC 1 cut(s) 80
MroI TCCGGA 1 cut(s) 157
MseI TTAA 3 cut(s) 530, 597, 839
MspA1I CMGCKG 1 cut(s) 468
MspI CCGG 1 cut(s) 158
MspR9I CCNGG 2 cut(s) 287, 315
MunI CAATTG 1 cut(s) 573
MvaI CCWGG 2 cut(s) 287, 315
MwoI GCNNNNNNNGC 2 cut(s) 510, 734
NdeII GATC 4 cut(s) 4, 415, 628, 767
NlaIII CATG 1 cut(s) 111
NmuCI GTSAC 1 cut(s) 72
PfeI GAWTC 4 cut(s) 238, 422, 812, 848
PkrI GCNGC 3 cut(s) 467, 470, 662
PleI GAGTC 1 cut(s) 79
PpsI GAGTC 1 cut(s) 79
PsiI TTATAA 1 cut(s) 263
Psp6I CCWGG 2 cut(s) 285, 313
PspGI CCWGG 2 cut(s) 285, 313
PsuI RGATCY 1 cut(s) 767
PvuII CAGCTG 1 cut(s) 468
RsaI GTAC 1 cut(s) 443
RsaNI GTAC 1 cut(s) 442
SaqAI TTAA 3 cut(s) 530, 597, 839
SatI GCNGC 3 cut(s) 466, 469, 661
Sau3AI GATC 4 cut(s) 4, 415, 628, 767
ScaI AGTACT 1 cut(s) 443
SchI GAGTC 1 cut(s) 80
ScrFI CCNGG 2 cut(s) 287, 315
SduI GDGCHC 2 cut(s) 362, 622
SfaNI GCATC 2 cut(s) 308, 343
SmlI CTYRAG 2 cut(s) 305, 604
SmoI CTYRAG 2 cut(s) 305, 604
StyD4I CCNGG 2 cut(s) 285, 313
StyI CCWWGG 1 cut(s) 687
TaaI ACNGT 4 cut(s) 38, 328, 537, 761
TaqI TCGA 3 cut(s) 414, 420, 425
TatI WGTACW 1 cut(s) 441
TfiI GAWTC 4 cut(s) 238, 422, 812, 848
Tru1I TTAA 3 cut(s) 530, 597, 839
Tru9I TTAA 3 cut(s) 530, 597, 839
TscAI CASTG 2 cut(s) 540, 764
TseFI GTSAC 1 cut(s) 72
TseI GCWGC 3 cut(s) 465, 468, 660
Tsp45I GTSAC 1 cut(s) 72
TspDTI ATGAA 5 cut(s) 198, 219, 735, 825, 903
TspGWI ACGGA 1 cut(s) 857
TspRI CASTG 2 cut(s) 540, 764
XapI RAATTY 6 cut(s) 161, 173, 185, 221, 752, 785
ZrmI AGTACT 1 cut(s) 443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.