Rh4BG185800

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000637
Physical Location & Seq
Reverse (-)
32485407 .. 32490506
5100 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG185800.1

Sequence Viewer

Length: 1185 bp
ATGGGTCCCCTACTATATCACTTTGCATATGTGTATGGACAAGGAGATGATATGTCTATTGAACTGAGTTTGGAGGACGTGAAGAGGGTTGCTTTACATTATGGATTTCATATAGAGAAGGAAAAGACCATTGAGACAACCTACACTACAAATCCCAGATCAATGATGCAATTCCCATCTTTGGAGAATGTCACAAGACATACTGGAAACTTATGGAAAATAATGGTTGAGAATGATGGTGAAAACATTTTCTTTAGTGTTGGGTTTGTCGACTCGCTTGTGACAGATCACCAAGCACAAAATACTTATTACGAGATGGAAGACGAACGAAGATGGGAGGAATTAGAGGTTGACTGTTTGGTGAATATATTTGGAAGAGTGGGAATGGAGTCATTGCTTTTGGATGTCCCTTTCGTATGCAAGACATGGTACAGAGCAACCCTCGACCCTTCATGCTGGCAATATCTCAAATTTCCTGATGATCTGAGTGATCGTACTTTTAGTTATGACCTTAAAGATCTATATTGGTGTACCCTTATTCAAAGATTTATAGATGAGTATCGACTTGATGAGACTCGTTTCTCGGTGACTGCATTTGTTAAGTTCATAATCAGTCGTAGCAAAGGAAAGGCTATTTATCTCAGGCTACCCCCATGTGCTTCAGAAGATGTCTTGAAATATGCTGCAGATGAGTGTCCTGCCTTAAAGCTTCTTGCATTGCCCAGCCGTTTAGTGAACCGTAAGTCGAGCATAGTTCAAGAAATAATTGGAAAGTGGACAAATTTGGAGTACTTGGTATTGGGAAGCAGCTATAATTTGGAAAATTTCCTTGGACAGATCTCCATTCACTGCAAGAACTTGTGTCTTTTGCGTGTGGCTGATGCAAACATTGGTAAAGATGAAGCAATGGCAATTGTTAGCTTGCTGCCTAAGCTTAAGCAATTAATCTTGAAGAATGCATATATTGATCGGGATGATCTTGTGACGCTACTGCGGGAATGCAACGAGCTTGTGCGCTTGGATGTCAGCAATTGTATAGGTTTTGATGATGAAGATGAAGAAATAGCAAAGCTTGCTTCTCATATTGTTGATTTCAGCTCTCAGGGTTCCACACTAGATGATTATGATGATTACGATGGACATATTTCCCATGATGAAGATGTTTATGGATACGGTTCCGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

394

Amino Acids

45.43

Weight (kDa)

4.67

Isoelectric Point (pI)

43.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CARME PF07942 1 - 57 2.5e-14 Carnosine N-methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000637)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13771 FvH4_4g13861 FvH4_4g13862 FvH4_4g13890 FvH4_4g13890 FvH4_4g13890 FvH4_4g13901
malus_domestica MD04G1010000.v1.1
prunus_persica Prupe.1G009600_v2.0.a1 Prupe.1G010100_v2.0.a1 Prupe.1G012400_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G157400_v2.0.a1 Prupe.1G157500_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.2G138900_v2.0.a1 Prupe.6G053000_v2.0.a1
pyrus_communis pycom04g00810
rosa_chinensis RchiOBHm_Chr4g0414621 RchiOBHm_Chr4g0414631 RchiOBHm_Chr4g0414641 RchiOBHm_Chr4g0415011 RchiOBHm_Chr4g0415031
rosa_laevigata RLG00000008101 RLG00000008104 RLG00000008138 RLG00000008139 RLG00000008140 RLG00000008354
rosa_multiflora Rmu_co8247483.1_g000001 Rmu_sc0003611.1_g000009 Rmu_sc0003611.1_g000014 Rmu_sc0007034.1_g000033 Rmu_sc0007391.1_g000006 Rmu_sc0011778.1_g000017 Rmu_sc0016172.1_g000002
rosa_roxburghii Rroxscaffold_5G00358400 Rroxscaffold_5G00358430 Rroxscaffold_5G00358610 Rroxscaffold_5G00358740 Rroxscaffold_5G00358750 Rroxscaffold_5G00358770
rosa_rugosa Rorug04G0108700 Rorug04G0128400 Rorug04G0128500 Rorug04G0128900 Rorug04G0129000 Rorug04G0129100 Rorug04G0131400 Rorug04G0131500 Rorug04G0131600 Rorug04G0131800 Rorug04G0131900
rosa_samantha Rh4AG187100 Rh4AG187200 Rh4AG190700 Rh4AG191200 Rh4BG185800 Rh4BG186100 Rh4BG188700 Rh4BG188900 Rh4BG189300 Rh4CG199200 Rh4CG199700 Rh4CG201900 Rh4CG202100 Rh4DG185400 Rh4DG185700 Rh4DG189300 Rh4DG189700 Rh6CG237600
rosa_wichuraiana Rw4G015970 Rw4G016000 Rw4G016240 Rw4G016260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 270
AciI CCGC 1 cut(s) 994
AcsI RAATTY 3 cut(s) 470, 781, 823
AcuI CTGAAG 1 cut(s) 645
AfaI GTAC 4 cut(s) 431, 496, 532, 791
AfiI CCNNNNNNNGG 1 cut(s) 181
AflII CTTAAG 1 cut(s) 935
AgsI TTSAA 5 cut(s) 62, 542, 676, 758, 952
AjiI CACGTC 1 cut(s) 79
AjuI GAANNNNNNNTTGG 2 cut(s) 813, 845
AluBI AGCT 7 cut(s) 709, 810, 921, 934, 1009, 1072, 1098
AluI AGCT 7 cut(s) 709, 810, 921, 934, 1009, 1072, 1098
Alw26I GTCTC 2 cut(s) 128, 566
ApeKI GCWGC 3 cut(s) 683, 807, 925
ApoI RAATTY 3 cut(s) 470, 781, 823
AseI ATTAAT 1 cut(s) 944
AspLEI GCGC 1 cut(s) 1017
AspS9I GGNCC 1 cut(s) 5
AsuHPI GGTGA 4 cut(s) 251, 281, 373, 598
AvaII GGWCC 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 327
BbvI GCAGC 3 cut(s) 670, 819, 912
BccI CCATC 5 cut(s) 184, 230, 310, 327, 1130
BceAI ACGGC 1 cut(s) 711
BciVI GTATCC 1 cut(s) 1163
BcoDI GTCTC 2 cut(s) 128, 566
BfaI CTAG 1 cut(s) 1115
BfmI CTRYAG 1 cut(s) 684
BfrI CTTAAG 1 cut(s) 935
BfuI GTATCC 1 cut(s) 1163
BglII AGATCT 2 cut(s) 517, 837
BisI GCNGC 3 cut(s) 684, 808, 926
BlsI GCNGC 3 cut(s) 685, 809, 927
BmcAI AGTACT 1 cut(s) 791
Bme18I GGWCC 1 cut(s) 5
BmgBI CACGTC 1 cut(s) 79
BmgT120I GGNCC 1 cut(s) 5
BmiI GGNNCC 4 cut(s) 6, 7, 1108, 1177
BmsI GCATC 2 cut(s) 156, 871
BpiI GAAGAC 1 cut(s) 327
BplI GAGNNNNNCTC 2 cut(s) 426, 458
Bpu10I CCTNAGC 1 cut(s) 930
BsaBI GATNNNNATC 1 cut(s) 558
BsaJI CCNNGG 1 cut(s) 829
Bsc4I CCNNNNNNNGG 1 cut(s) 181
Bse1I ACTGG 1 cut(s) 208
Bse3DI GCAATG 3 cut(s) 392, 716, 912
Bse8I GATNNNNATC 1 cut(s) 558
BseDI CCNNGG 1 cut(s) 829
BseGI GGATG 3 cut(s) 409, 979, 1027
BseJI GATNNNNATC 1 cut(s) 558
BseLI CCNNNNNNNGG 1 cut(s) 181
BseMI GCAATG 3 cut(s) 392, 716, 912
BseMII CTCAG 4 cut(s) 56, 476, 655, 1115
BseNI ACTGG 1 cut(s) 208
BseXI GCAGC 3 cut(s) 670, 819, 912
BseYI CCCAGC 1 cut(s) 722
BslFI GGGAC 1 cut(s) 392
BslI CCNNNNNNNGG 1 cut(s) 181
BsmAI GTCTC 2 cut(s) 128, 566
BsmFI GGGAC 1 cut(s) 392
BsmI GAATGC 2 cut(s) 961, 1004
Bsp143I GATC 8 cut(s) 158, 286, 481, 490, 517, 837, 967, 976
BspACI CCGC 1 cut(s) 994
BspCNI CTCAG 4 cut(s) 57, 477, 654, 1114
BspLI GGNNCC 4 cut(s) 6, 7, 1108, 1177
BspMAI CTGCAG 1 cut(s) 688
BspTI CTTAAG 1 cut(s) 935
BsrDI GCAATG 3 cut(s) 392, 716, 912
BsrI ACTGG 1 cut(s) 208
BssECI CCNNGG 1 cut(s) 829
BssMI GATC 8 cut(s) 158, 286, 481, 490, 517, 837, 967, 976
BssT1I CCWWGG 1 cut(s) 829
Bst4CI ACNGT 3 cut(s) 356, 740, 1175
Bst6I CTCTTC 2 cut(s) 77, 370
BstAFI CTTAAG 1 cut(s) 935
BstAPI GCANNNNNTGC 1 cut(s) 1073
BstC8I GCNNGC 3 cut(s) 458, 923, 1074
BstDEI CTNAG 5 cut(s) 65, 485, 641, 930, 1101
BstF5I GGATG 3 cut(s) 409, 979, 1027
BstHHI GCGC 1 cut(s) 1017
BstKTI GATC 8 cut(s) 161, 289, 484, 493, 520, 840, 970, 979
BstMAI GTCTC 2 cut(s) 128, 566
BstMBI GATC 8 cut(s) 158, 286, 481, 490, 517, 837, 967, 976
BstMWI GCNNNNNNNGC 2 cut(s) 931, 1073
BstSFI CTRYAG 1 cut(s) 684
BstV1I GCAGC 3 cut(s) 670, 819, 912
BstV2I GAAGAC 1 cut(s) 327
BstX2I RGATCY 2 cut(s) 517, 837
BstYI RGATCY 2 cut(s) 517, 837
BsuI GTATCC 1 cut(s) 1163
BtrI CACGTC 1 cut(s) 79
BtsCI GGATG 3 cut(s) 409, 979, 1027
BtsI GCAGTG 1 cut(s) 847
BtsIMutI CAGTG 1 cut(s) 847
Cac8I GCNNGC 3 cut(s) 458, 923, 1074
CfoI GCGC 1 cut(s) 1017
Cfr13I GGNCC 1 cut(s) 5
CseI GACGC 1 cut(s) 994
Csp6I GTAC 4 cut(s) 430, 495, 531, 790
CviAII CATG 4 cut(s) 426, 453, 654, 1151
CviQI GTAC 4 cut(s) 430, 495, 531, 790
DdeI CTNAG 5 cut(s) 65, 485, 641, 930, 1101
DpnI GATC 8 cut(s) 160, 288, 483, 492, 519, 839, 969, 978
DpnII GATC 8 cut(s) 158, 286, 481, 490, 517, 837, 967, 976
Eam1104I CTCTTC 2 cut(s) 77, 370
EarI CTCTTC 2 cut(s) 77, 370
Eco130I CCWWGG 1 cut(s) 829
Eco47I GGWCC 1 cut(s) 5
Eco57I CTGAAG 1 cut(s) 645
EcoO109I RGGNCCY 1 cut(s) 5
EcoT14I CCWWGG 1 cut(s) 829
EcoT22I ATGCAT 1 cut(s) 961
ErhI CCWWGG 1 cut(s) 829
FaeI CATG 4 cut(s) 429, 456, 657, 1154
FaqI GGGAC 1 cut(s) 392
FatI CATG 4 cut(s) 425, 452, 653, 1150
FauI CCCGC 1 cut(s) 987
FauNDI CATATG 1 cut(s) 28
FblI GTMKAC 1 cut(s) 270
Fnu4HI GCNGC 3 cut(s) 684, 808, 926
FokI GGATG 3 cut(s) 416, 986, 1034
Fsp4HI GCNGC 3 cut(s) 684, 808, 926
FspBI CTAG 1 cut(s) 1115
GlaI GCGC 1 cut(s) 1016
GluI GCNGC 3 cut(s) 684, 808, 926
GsaI CCCAGC 1 cut(s) 726
HgaI GACGC 1 cut(s) 994
HhaI GCGC 1 cut(s) 1017
Hin1II CATG 4 cut(s) 429, 456, 657, 1154
Hin6I GCGC 1 cut(s) 1015
HinP1I GCGC 1 cut(s) 1015
HincII GTYRAC 2 cut(s) 271, 352
HindII GTYRAC 2 cut(s) 271, 352
HindIII AAGCTT 3 cut(s) 707, 932, 1070
HinfI GANTC 3 cut(s) 272, 389, 574
HphI GGTGA 4 cut(s) 251, 281, 373, 598
Hpy166II GTNNAC 5 cut(s) 271, 352, 531, 736, 777
Hpy188I TCNGA 3 cut(s) 486, 664, 1180
Hpy188III TCNNGA 5 cut(s) 476, 673, 758, 949, 971
Hpy8I GTNNAC 5 cut(s) 271, 352, 531, 736, 777
HpyAV CCTTC 2 cut(s) 112, 459
HpyCH4III ACNGT 3 cut(s) 356, 740, 1175
HpyCH4IV ACGT 1 cut(s) 78
HpyF10VI GCNNNNNNNGC 2 cut(s) 931, 1073
HpyF3I CTNAG 5 cut(s) 65, 485, 641, 930, 1101
HpySE526I ACGT 1 cut(s) 78
Hsp92II CATG 4 cut(s) 429, 456, 657, 1154
HspAI GCGC 1 cut(s) 1015
KflI GGGWCCC 1 cut(s) 5
Kzo9I GATC 8 cut(s) 158, 286, 481, 490, 517, 837, 967, 976
LpnPI CCDG 8 cut(s) 169, 189, 442, 489, 628, 711, 736, 1088
Lsp1109I GCAGC 3 cut(s) 670, 819, 912
LweI GCATC 2 cut(s) 156, 871
MaeI CTAG 1 cut(s) 1115
MaeII ACGT 1 cut(s) 78
MaeIII GTNAC 4 cut(s) 190, 280, 586, 982
MalI GATC 8 cut(s) 160, 288, 483, 492, 519, 839, 969, 978
MboI GATC 8 cut(s) 158, 286, 481, 490, 517, 837, 967, 976
MboII GAAGA 9 cut(s) 94, 332, 342, 387, 677, 964, 1064, 1070, 1169
MfeI CAATTG 2 cut(s) 912, 1030
MflI RGATCY 2 cut(s) 517, 837
MlyI GAGTC 3 cut(s) 266, 398, 568
MnlI CCTC 5 cut(s) 67, 78, 331, 340, 452
Mph1103I ATGCAT 1 cut(s) 961
MseI TTAA 5 cut(s) 513, 600, 704, 936, 944
MspCI CTTAAG 1 cut(s) 935
MunI CAATTG 2 cut(s) 912, 1030
Mva1269I GAATGC 2 cut(s) 961, 1004
MwoI GCNNNNNNNGC 2 cut(s) 931, 1073
NdeI CATATG 1 cut(s) 28
NdeII GATC 8 cut(s) 158, 286, 481, 490, 517, 837, 967, 976
NlaIII CATG 4 cut(s) 429, 456, 657, 1154
NlaIV GGNNCC 4 cut(s) 6, 7, 1108, 1177
NmuCI GTSAC 4 cut(s) 190, 280, 586, 982
NsiI ATGCAT 1 cut(s) 961
PctI GAATGC 2 cut(s) 961, 1004
PkrI GCNGC 3 cut(s) 685, 809, 927
PleI GAGTC 3 cut(s) 266, 397, 568
PpsI GAGTC 3 cut(s) 266, 397, 568
PpuMI RGGWCCY 1 cut(s) 5
PshBI ATTAAT 1 cut(s) 944
Psp5II RGGWCCY 1 cut(s) 5
PspFI CCCAGC 1 cut(s) 722
PspN4I GGNNCC 4 cut(s) 6, 7, 1108, 1177
PspPI GGNCC 1 cut(s) 5
PspPPI RGGWCCY 1 cut(s) 5
PstI CTGCAG 1 cut(s) 688
PsuI RGATCY 2 cut(s) 517, 837
RsaI GTAC 4 cut(s) 431, 496, 532, 791
RsaNI GTAC 4 cut(s) 430, 495, 531, 790
SalI GTCGAC 1 cut(s) 269
SaqAI TTAA 5 cut(s) 513, 600, 704, 936, 944
SatI GCNGC 3 cut(s) 684, 808, 926
Sau3AI GATC 8 cut(s) 158, 286, 481, 490, 517, 837, 967, 976
Sau96I GGNCC 1 cut(s) 5
ScaI AGTACT 1 cut(s) 791
SchI GAGTC 3 cut(s) 266, 398, 568
SfaNI GCATC 2 cut(s) 156, 871
SfcI CTRYAG 1 cut(s) 684
SinI GGWCC 1 cut(s) 5
SmlI CTYRAG 1 cut(s) 935
SmoI CTYRAG 1 cut(s) 935
SsiI CCGC 1 cut(s) 994
SspMI CTAG 1 cut(s) 1115
StyI CCWWGG 1 cut(s) 829
TaaI ACNGT 3 cut(s) 356, 740, 1175
TaiI ACGT 1 cut(s) 81
TaqI TCGA 4 cut(s) 270, 444, 562, 746
TatI WGTACW 1 cut(s) 789
Tru1I TTAA 5 cut(s) 513, 600, 704, 936, 944
Tru9I TTAA 5 cut(s) 513, 600, 704, 936, 944
TscAI CASTG 1 cut(s) 854
TseFI GTSAC 4 cut(s) 190, 280, 586, 982
TseI GCWGC 3 cut(s) 683, 807, 925
Tsp45I GTSAC 4 cut(s) 190, 280, 586, 982
TspDTI ATGAA 7 cut(s) 98, 441, 595, 915, 1065, 1071, 1170
TspRI CASTG 1 cut(s) 854
Vha464I CTTAAG 1 cut(s) 935
VpaK11BI GGWCC 1 cut(s) 5
VspI ATTAAT 1 cut(s) 944
XapI RAATTY 3 cut(s) 470, 781, 823
XmiI GTMKAC 1 cut(s) 270
XspI CTAG 1 cut(s) 1115
ZrmI AGTACT 1 cut(s) 791
Zsp2I ATGCAT 1 cut(s) 961
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.