RLG00000008354

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000637
Physical Location & Seq
Reverse (-)
29341214 .. 29342393
1180 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008354

Sequence Viewer

Length: 546 bp
ATGGAGTCATTACTTTTGGATGTCCCTTTTGTATGCAAGTCATGGTACAGAGCAACCCTCAACCCTTCATGCTGGCAATATCTCAAATTTCCTGATCTTACTATTGATCACTATGAGAGCCATTTCTCGGTGACTGCATTTATAGCCTGCGTTAAAGCTTCTTGCATTGCCCGGCCGTTTAGTGGACCGTATGTCAAGCACAATTCAAGAAATAATTGGAAAGTGGACAAATTTGGAGTACTCGATGAAGCAATGGCAATTATTAGCTTGCTGCCTAAGCTTAAGGAATTAATATTGAAGAATGCATATATCGATCGAGATGATCTTGTGACGCTACTGAGGGGCTGCAACGAGCTTGTGCGTTTGGATGTCAGCAATTATATAGGTTTTGATGAAGAAGATGAAGAAATAGCAAAGCTTGCTTCTCATATTGCTGATTTCAGCTCTCAGGGTTCCATACTATTTGATTATGATGATTACGGACATATTTGCCGTGATGAAGATGTTTATGGATACGACCGATTAGTCGCGCAATTATACTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

182

Amino Acids

20.81

Weight (kDa)

4.85

Isoelectric Point (pI)

40.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000637)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13771 FvH4_4g13861 FvH4_4g13862 FvH4_4g13890 FvH4_4g13890 FvH4_4g13890 FvH4_4g13901
malus_domestica MD04G1010000.v1.1
prunus_persica Prupe.1G009600_v2.0.a1 Prupe.1G010100_v2.0.a1 Prupe.1G012400_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G157400_v2.0.a1 Prupe.1G157500_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.2G138900_v2.0.a1 Prupe.6G053000_v2.0.a1
pyrus_communis pycom04g00810
rosa_chinensis RchiOBHm_Chr4g0414621 RchiOBHm_Chr4g0414631 RchiOBHm_Chr4g0414641 RchiOBHm_Chr4g0415011 RchiOBHm_Chr4g0415031
rosa_laevigata RLG00000008101 RLG00000008104 RLG00000008138 RLG00000008139 RLG00000008140 RLG00000008354
rosa_multiflora Rmu_co8247483.1_g000001 Rmu_sc0003611.1_g000009 Rmu_sc0003611.1_g000014 Rmu_sc0007034.1_g000033 Rmu_sc0007391.1_g000006 Rmu_sc0011778.1_g000017 Rmu_sc0016172.1_g000002
rosa_roxburghii Rroxscaffold_5G00358400 Rroxscaffold_5G00358430 Rroxscaffold_5G00358610 Rroxscaffold_5G00358740 Rroxscaffold_5G00358750 Rroxscaffold_5G00358770
rosa_rugosa Rorug04G0108700 Rorug04G0128400 Rorug04G0128500 Rorug04G0128900 Rorug04G0129000 Rorug04G0129100 Rorug04G0131400 Rorug04G0131500 Rorug04G0131600 Rorug04G0131800 Rorug04G0131900
rosa_samantha Rh4AG187100 Rh4AG187200 Rh4AG190700 Rh4AG191200 Rh4BG185800 Rh4BG186100 Rh4BG188700 Rh4BG188900 Rh4BG189300 Rh4CG199200 Rh4CG199700 Rh4CG201900 Rh4CG202100 Rh4DG185400 Rh4DG185700 Rh4DG189300 Rh4DG189700 Rh6CG237600
rosa_wichuraiana Rw4G015970 Rw4G016000 Rw4G016240 Rw4G016260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 524
AccII CGCG 1 cut(s) 530
AcoI YGGCCR 1 cut(s) 173
AcsI RAATTY 2 cut(s) 86, 230
AfaI GTAC 2 cut(s) 47, 240
AfiI CCNNNNNNNGG 2 cut(s) 127, 182
AflII CTTAAG 1 cut(s) 281
AgsI TTSAA 2 cut(s) 207, 298
AhdI GACNNNNNGTC 1 cut(s) 191
AluBI AGCT 6 cut(s) 158, 267, 280, 355, 418, 444
AluI AGCT 6 cut(s) 158, 267, 280, 355, 418, 444
AoxI GGCC 1 cut(s) 173
ApeKI GCWGC 2 cut(s) 271, 345
ApoI RAATTY 2 cut(s) 86, 230
AseI ATTAAT 1 cut(s) 290
AspLEI GCGC 1 cut(s) 532
AspS9I GGNCC 1 cut(s) 185
AsuC2I CCSGG 1 cut(s) 172
AsuHPI GGTGA 1 cut(s) 142
AvaII GGWCC 1 cut(s) 185
BbvI GCAGC 2 cut(s) 258, 332
BceAI ACGGC 2 cut(s) 160, 477
BciVI GTATCC 1 cut(s) 506
BclI TGATCA 1 cut(s) 106
BcnI CCSGG 1 cut(s) 172
BfaI CTAG 1 cut(s) 544
BfrI CTTAAG 1 cut(s) 281
BfuI GTATCC 1 cut(s) 506
BisI GCNGC 2 cut(s) 272, 346
BlsI GCNGC 2 cut(s) 273, 347
BmcAI AGTACT 1 cut(s) 240
Bme1390I CCNGG 1 cut(s) 172
Bme18I GGWCC 1 cut(s) 185
BmeRI GACNNNNNGTC 1 cut(s) 191
BmgT120I GGNCC 1 cut(s) 185
BmiI GGNNCC 1 cut(s) 454
BmrFI CCNGG 1 cut(s) 172
BplI GAGNNNNNCTC 2 cut(s) 42, 74
Bpu10I CCTNAGC 1 cut(s) 276
BpuMI CCSGG 1 cut(s) 172
Bsa29I ATCGAT 1 cut(s) 312
Bsc4I CCNNNNNNNGG 2 cut(s) 127, 182
Bse3DI GCAATG 2 cut(s) 165, 258
BseCI ATCGAT 1 cut(s) 312
BseGI GGATG 2 cut(s) 25, 373
BseLI CCNNNNNNNGG 2 cut(s) 127, 182
BseMI GCAATG 2 cut(s) 165, 258
BseMII CTCAG 2 cut(s) 329, 461
BseX3I CGGCCG 1 cut(s) 173
BseXI GCAGC 2 cut(s) 258, 332
Bsh1236I CGCG 1 cut(s) 530
Bsh1285I CGRYCG 3 cut(s) 176, 316, 520
BshFI GGCC 1 cut(s) 175
BshVI ATCGAT 1 cut(s) 312
BsiEI CGRYCG 3 cut(s) 176, 316, 520
BsiSI CCGG 1 cut(s) 172
BslFI GGGAC 1 cut(s) 8
BslI CCNNNNNNNGG 2 cut(s) 127, 182
BsmFI GGGAC 1 cut(s) 8
BsmI GAATGC 1 cut(s) 307
BsnI GGCC 1 cut(s) 175
Bsp143I GATC 4 cut(s) 94, 106, 313, 322
BspANI GGCC 1 cut(s) 175
BspCNI CTCAG 2 cut(s) 330, 460
BspDI ATCGAT 1 cut(s) 312
BspFNI CGCG 1 cut(s) 530
BspLI GGNNCC 1 cut(s) 454
BspTI CTTAAG 1 cut(s) 281
BsrDI GCAATG 2 cut(s) 165, 258
BssMI GATC 4 cut(s) 94, 106, 313, 322
Bst4CI ACNGT 1 cut(s) 189
BstAFI CTTAAG 1 cut(s) 281
BstAPI GCANNNNNTGC 1 cut(s) 419
BstC8I GCNNGC 4 cut(s) 74, 148, 269, 420
BstDEI CTNAG 3 cut(s) 276, 338, 447
BstF5I GGATG 2 cut(s) 25, 373
BstFNI CGCG 1 cut(s) 530
BstHHI GCGC 1 cut(s) 532
BstKTI GATC 4 cut(s) 97, 109, 316, 325
BstMBI GATC 4 cut(s) 94, 106, 313, 322
BstMCI CGRYCG 3 cut(s) 176, 316, 520
BstMWI GCNNNNNNNGC 3 cut(s) 143, 277, 419
BstSCI CCNGG 1 cut(s) 170
BstUI CGCG 1 cut(s) 530
BstV1I GCAGC 2 cut(s) 258, 332
BstZI CGGCCG 1 cut(s) 173
Bsu15I ATCGAT 1 cut(s) 312
BsuI GTATCC 1 cut(s) 506
BsuRI GGCC 1 cut(s) 175
BsuTUI ATCGAT 1 cut(s) 312
BtsCI GGATG 2 cut(s) 25, 373
Cac8I GCNNGC 4 cut(s) 74, 148, 269, 420
CfoI GCGC 1 cut(s) 532
Cfr13I GGNCC 1 cut(s) 185
ClaI ATCGAT 1 cut(s) 312
CseI GACGC 1 cut(s) 340
Csp6I GTAC 2 cut(s) 46, 239
CviAII CATG 2 cut(s) 42, 69
CviQI GTAC 2 cut(s) 46, 239
DdeI CTNAG 3 cut(s) 276, 338, 447
DpnI GATC 4 cut(s) 96, 108, 315, 324
DpnII GATC 4 cut(s) 94, 106, 313, 322
DrdI GACNNNNNNGTC 1 cut(s) 524
DriI GACNNNNNGTC 1 cut(s) 191
DseDI GACNNNNNNGTC 1 cut(s) 524
EaeI YGGCCR 1 cut(s) 173
EagI CGGCCG 1 cut(s) 173
Eam1105I GACNNNNNGTC 1 cut(s) 191
EclXI CGGCCG 1 cut(s) 173
Eco47I GGWCC 1 cut(s) 185
Eco52I CGGCCG 1 cut(s) 173
EcoT22I ATGCAT 1 cut(s) 307
FaeI CATG 2 cut(s) 45, 72
FaqI GGGAC 1 cut(s) 8
FatI CATG 2 cut(s) 41, 68
FbaI TGATCA 1 cut(s) 106
Fnu4HI GCNGC 2 cut(s) 272, 346
FokI GGATG 2 cut(s) 32, 380
Fsp4HI GCNGC 2 cut(s) 272, 346
FspBI CTAG 1 cut(s) 544
GlaI GCGC 1 cut(s) 531
GluI GCNGC 2 cut(s) 272, 346
HaeIII GGCC 1 cut(s) 175
HapII CCGG 1 cut(s) 172
HgaI GACGC 1 cut(s) 340
HhaI GCGC 1 cut(s) 532
Hin1II CATG 2 cut(s) 45, 72
Hin6I GCGC 1 cut(s) 530
HinP1I GCGC 1 cut(s) 530
HindIII AAGCTT 3 cut(s) 156, 278, 416
HinfI GANTC 1 cut(s) 5
HpaII CCGG 1 cut(s) 172
HphI GGTGA 1 cut(s) 142
Hpy166II GTNNAC 2 cut(s) 185, 226
Hpy188III TCNNGA 3 cut(s) 92, 207, 317
Hpy8I GTNNAC 2 cut(s) 185, 226
HpyAV CCTTC 1 cut(s) 75
HpyCH4III ACNGT 1 cut(s) 189
HpyCH4V TGCA 5 cut(s) 36, 137, 165, 305, 348
HpyF10VI GCNNNNNNNGC 3 cut(s) 143, 277, 419
HpyF3I CTNAG 3 cut(s) 276, 338, 447
Hsp92II CATG 2 cut(s) 45, 72
HspAI GCGC 1 cut(s) 530
Ksp22I TGATCA 1 cut(s) 106
Kzo9I GATC 4 cut(s) 94, 106, 313, 322
LpnPI CCDG 5 cut(s) 58, 105, 160, 185, 434
Lsp1109I GCAGC 2 cut(s) 258, 332
MaeI CTAG 1 cut(s) 544
MaeIII GTNAC 2 cut(s) 130, 328
MalI GATC 4 cut(s) 96, 108, 315, 324
MboI GATC 4 cut(s) 94, 106, 313, 322
MboII GAAGA 5 cut(s) 310, 407, 410, 416, 512
MluCI AATT 8 cut(s) 86, 202, 214, 230, 258, 287, 376, 533
MlyI GAGTC 1 cut(s) 14
MnlI CCTC 2 cut(s) 68, 333
Mph1103I ATGCAT 1 cut(s) 307
MseI TTAA 3 cut(s) 153, 282, 290
MspCI CTTAAG 1 cut(s) 281
MspI CCGG 1 cut(s) 172
MspR9I CCNGG 1 cut(s) 172
Mva1269I GAATGC 1 cut(s) 307
MvnI CGCG 1 cut(s) 530
MwoI GCNNNNNNNGC 3 cut(s) 143, 277, 419
NciI CCSGG 1 cut(s) 172
NdeII GATC 4 cut(s) 94, 106, 313, 322
NlaIII CATG 2 cut(s) 45, 72
NlaIV GGNNCC 1 cut(s) 454
NmuCI GTSAC 2 cut(s) 130, 328
NsiI ATGCAT 1 cut(s) 307
PctI GAATGC 1 cut(s) 307
PkrI GCNGC 2 cut(s) 273, 347
Ple19I CGATCG 1 cut(s) 316
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PshBI ATTAAT 1 cut(s) 290
PspN4I GGNNCC 1 cut(s) 454
PspPI GGNCC 1 cut(s) 185
PvuI CGATCG 1 cut(s) 316
RsaI GTAC 2 cut(s) 47, 240
RsaNI GTAC 2 cut(s) 46, 239
SaqAI TTAA 3 cut(s) 153, 282, 290
SatI GCNGC 2 cut(s) 272, 346
Sau3AI GATC 4 cut(s) 94, 106, 313, 322
Sau96I GGNCC 1 cut(s) 185
ScaI AGTACT 1 cut(s) 240
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 1 cut(s) 172
SetI ASST 7 cut(s) 160, 269, 282, 357, 388, 420, 446
SinI GGWCC 1 cut(s) 185
SmlI CTYRAG 1 cut(s) 281
SmoI CTYRAG 1 cut(s) 281
Sse9I AATT 8 cut(s) 86, 202, 214, 230, 258, 287, 376, 533
SspI AATATT 1 cut(s) 294
SspMI CTAG 1 cut(s) 544
StyD4I CCNGG 1 cut(s) 170
TaaI ACNGT 1 cut(s) 189
TaqI TCGA 3 cut(s) 243, 312, 316
TaqII GACCGA 1 cut(s) 534
TasI AATT 8 cut(s) 86, 202, 214, 230, 258, 287, 376, 533
TatI WGTACW 1 cut(s) 238
Tru1I TTAA 3 cut(s) 153, 282, 290
Tru9I TTAA 3 cut(s) 153, 282, 290
TseFI GTSAC 2 cut(s) 130, 328
TseI GCWGC 2 cut(s) 271, 345
Tsp45I GTSAC 2 cut(s) 130, 328
TspDTI ATGAA 5 cut(s) 57, 261, 408, 417, 513
TspGWI ACGGA 1 cut(s) 495
Vha464I CTTAAG 1 cut(s) 281
VpaK11BI GGWCC 1 cut(s) 185
VspI ATTAAT 1 cut(s) 290
XapI RAATTY 2 cut(s) 86, 230
XspI CTAG 1 cut(s) 544
ZrmI AGTACT 1 cut(s) 240
Zsp2I ATGCAT 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.