Rh4BG189300

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000637
Physical Location & Seq
Forward (+)
32936078 .. 32938273
2196 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG189300.1

Sequence Viewer

Length: 585 bp
ATGGATCAACGAAGATGGGAGGACTTAGATAATCCTTGTTTGGTGAAAGTGTTTGAGAAAGTTGATATGGAGTCACTACTCTTGGATATTCCTTTTGTGTGCAAGTCATGGCACAAAGAAACACTAAATCCTTCTTGCTGGAAAAGTCTTATCTTTCCGGAATTTGAACCTGGATTTCCTTATGAATTTGATTATCCAATCCATGAAAGATTTGTTTCTGAATTTGGCCTTGATAGGAATCGTGTCTCCGAAACTGCCTTTATAAAGTTTGTTGTCAATCGTAGCCAAGGAAAGGCTGTTTTTCTCAAGCTACCTGGATTCTCTACCGTAGAAGCCTTTGAATATGTTGCAGATGCGTGCCCTAACCTTGTGATTTTGGGTTTACCAAGATATTTGTTGTGGAAAGAAGACATCGATCTCGAATCGATTGGCAAGTTCAAGTACTTGTATGTGTTGTCATTGGGCAGCTGCGATAAATTGGACAGAGTTCTTGCAGTAGTCAGCAAACAGTGCAAGTTGTTTTCTCATTTAACACTGTCTAATGCCCAAATTGGTAAAGAAGAGGTTATGGCAATTGTCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

194

Amino Acids

22.44

Weight (kDa)

5.32

Isoelectric Point (pI)

42.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000637)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13771 FvH4_4g13861 FvH4_4g13862 FvH4_4g13890 FvH4_4g13890 FvH4_4g13890 FvH4_4g13901
malus_domestica MD04G1010000.v1.1
prunus_persica Prupe.1G009600_v2.0.a1 Prupe.1G010100_v2.0.a1 Prupe.1G012400_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G157400_v2.0.a1 Prupe.1G157500_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.2G138900_v2.0.a1 Prupe.6G053000_v2.0.a1
pyrus_communis pycom04g00810
rosa_chinensis RchiOBHm_Chr4g0414621 RchiOBHm_Chr4g0414631 RchiOBHm_Chr4g0414641 RchiOBHm_Chr4g0415011 RchiOBHm_Chr4g0415031
rosa_laevigata RLG00000008101 RLG00000008104 RLG00000008138 RLG00000008139 RLG00000008140 RLG00000008354
rosa_multiflora Rmu_co8247483.1_g000001 Rmu_sc0003611.1_g000009 Rmu_sc0003611.1_g000014 Rmu_sc0007034.1_g000033 Rmu_sc0007391.1_g000006 Rmu_sc0011778.1_g000017 Rmu_sc0016172.1_g000002
rosa_roxburghii Rroxscaffold_5G00358400 Rroxscaffold_5G00358430 Rroxscaffold_5G00358610 Rroxscaffold_5G00358740 Rroxscaffold_5G00358750 Rroxscaffold_5G00358770
rosa_rugosa Rorug04G0108700 Rorug04G0128400 Rorug04G0128500 Rorug04G0128900 Rorug04G0129000 Rorug04G0129100 Rorug04G0131400 Rorug04G0131500 Rorug04G0131600 Rorug04G0131800 Rorug04G0131900
rosa_samantha Rh4AG187100 Rh4AG187200 Rh4AG190700 Rh4AG191200 Rh4BG185800 Rh4BG186100 Rh4BG188700 Rh4BG188900 Rh4BG189300 Rh4CG199200 Rh4CG199700 Rh4CG201900 Rh4CG202100 Rh4DG185400 Rh4DG185700 Rh4DG189300 Rh4DG189700 Rh6CG237600
rosa_wichuraiana Rw4G015970 Rw4G016000 Rw4G016240 Rw4G016260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 263
AccIII TCCGGA 1 cut(s) 157
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 3 cut(s) 161, 185, 221
AfaI GTAC 1 cut(s) 443
AfiI CCNNNNNNNGG 1 cut(s) 292
AgsI TTSAA 3 cut(s) 167, 341, 439
AjnI CCWGG 2 cut(s) 169, 313
AluBI AGCT 2 cut(s) 310, 468
AluI AGCT 2 cut(s) 310, 468
Alw26I GTCTC 1 cut(s) 250
AlwI GGATC 1 cut(s) 12
Aor13HI TCCGGA 1 cut(s) 157
AoxI GGCC 1 cut(s) 226
ApeKI GCWGC 2 cut(s) 465, 468
ApoI RAATTY 3 cut(s) 161, 185, 221
AsuHPI GGTGA 1 cut(s) 55
BaeGI GKGCMC 1 cut(s) 362
BbsI GAAGAC 1 cut(s) 414
BbvI GCAGC 2 cut(s) 455, 477
BccI CCATC 1 cut(s) 9
BciT130I CCWGG 2 cut(s) 171, 315
BcoDI GTCTC 1 cut(s) 250
BisI GCNGC 2 cut(s) 466, 469
BlsI GCNGC 2 cut(s) 467, 470
BmcAI AGTACT 1 cut(s) 443
Bme1390I CCNGG 2 cut(s) 171, 315
BmrFI CCNGG 2 cut(s) 171, 315
BmsI GCATC 1 cut(s) 343
BpiI GAAGAC 1 cut(s) 414
BpuEI CTTGAG 1 cut(s) 290
Bsa29I ATCGAT 2 cut(s) 414, 425
BsaBI GATNNNNATC 1 cut(s) 237
BsaJI CCNNGG 1 cut(s) 286
BsaWI WCCGGW 1 cut(s) 157
Bsc4I CCNNNNNNNGG 1 cut(s) 292
Bse8I GATNNNNATC 1 cut(s) 237
BseAI TCCGGA 1 cut(s) 157
BseBI CCWGG 2 cut(s) 171, 315
BseCI ATCGAT 2 cut(s) 414, 425
BseDI CCNNGG 1 cut(s) 286
BseJI GATNNNNATC 1 cut(s) 237
BseLI CCNNNNNNNGG 1 cut(s) 292
BseSI GKGCMC 1 cut(s) 362
BseXI GCAGC 2 cut(s) 455, 477
BshFI GGCC 1 cut(s) 228
BshVI ATCGAT 2 cut(s) 414, 425
BsiSI CCGG 1 cut(s) 158
BslI CCNNNNNNNGG 1 cut(s) 292
BsmAI GTCTC 1 cut(s) 250
BsnI GGCC 1 cut(s) 228
Bsp1286I GDGCHC 1 cut(s) 362
Bsp13I TCCGGA 1 cut(s) 157
Bsp143I GATC 2 cut(s) 4, 415
BspANI GGCC 1 cut(s) 228
BspDI ATCGAT 2 cut(s) 414, 425
BspEI TCCGGA 1 cut(s) 157
BspPI GGATC 1 cut(s) 12
BssECI CCNNGG 1 cut(s) 286
BssMI GATC 2 cut(s) 4, 415
BssT1I CCWWGG 1 cut(s) 286
Bst2UI CCWGG 2 cut(s) 171, 315
Bst4CI ACNGT 3 cut(s) 328, 510, 537
Bst6I CTCTTC 1 cut(s) 555
BstAPI GCANNNNNTGC 1 cut(s) 510
BstC8I GCNNGC 1 cut(s) 358
BstDEI CTNAG 1 cut(s) 25
BstKTI GATC 2 cut(s) 7, 418
BstMAI GTCTC 1 cut(s) 250
BstMBI GATC 2 cut(s) 4, 415
BstMWI GCNNNNNNNGC 1 cut(s) 510
BstNI CCWGG 2 cut(s) 171, 315
BstSCI CCNGG 2 cut(s) 169, 313
BstSLI GKGCMC 1 cut(s) 362
BstV1I GCAGC 2 cut(s) 455, 477
BstV2I GAAGAC 1 cut(s) 414
Bsu15I ATCGAT 2 cut(s) 414, 425
BsuRI GGCC 1 cut(s) 228
BsuTUI ATCGAT 2 cut(s) 414, 425
BtsIMutI CAGTG 2 cut(s) 515, 533
Cac8I GCNNGC 1 cut(s) 358
ClaI ATCGAT 2 cut(s) 414, 425
Csp6I GTAC 1 cut(s) 442
CviAII CATG 2 cut(s) 108, 203
CviJI RGCY 6 cut(s) 228, 285, 296, 310, 335, 468
CviKI_1 RGCY 6 cut(s) 228, 285, 296, 310, 335, 468
CviQI GTAC 1 cut(s) 442
DdeI CTNAG 1 cut(s) 25
DpnI GATC 2 cut(s) 6, 417
DpnII GATC 2 cut(s) 4, 415
Eam1104I CTCTTC 1 cut(s) 555
EarI CTCTTC 1 cut(s) 555
Eco130I CCWWGG 1 cut(s) 286
EcoRII CCWGG 2 cut(s) 169, 313
EcoT14I CCWWGG 1 cut(s) 286
ErhI CCWWGG 1 cut(s) 286
FaeI CATG 2 cut(s) 111, 206
FaiI YATR 8 cut(s) 68, 109, 183, 204, 263, 345, 450, 569
FatI CATG 2 cut(s) 107, 202
Fnu4HI GCNGC 2 cut(s) 466, 469
Fsp4HI GCNGC 2 cut(s) 466, 469
GluI GCNGC 2 cut(s) 466, 469
HaeIII GGCC 1 cut(s) 228
HapII CCGG 1 cut(s) 158
Hin1II CATG 2 cut(s) 111, 206
HincII GTYRAC 1 cut(s) 580
HindII GTYRAC 1 cut(s) 580
HinfI GANTC 4 cut(s) 71, 238, 318, 422
HpaII CCGG 1 cut(s) 158
HphI GGTGA 1 cut(s) 55
Hpy166II GTNNAC 2 cut(s) 383, 580
Hpy188I TCNGA 2 cut(s) 220, 250
Hpy188III TCNNGA 2 cut(s) 158, 419
Hpy8I GTNNAC 2 cut(s) 383, 580
HpyAV CCTTC 1 cut(s) 141
HpyCH4III ACNGT 3 cut(s) 328, 510, 537
HpyCH4V TGCA 4 cut(s) 102, 350, 494, 513
HpyF10VI GCNNNNNNNGC 1 cut(s) 510
HpyF3I CTNAG 1 cut(s) 25
Hsp92II CATG 2 cut(s) 111, 206
Kpn2I TCCGGA 1 cut(s) 157
Kzo9I GATC 2 cut(s) 4, 415
LpnPI CCDG 6 cut(s) 124, 156, 171, 183, 300, 327
Lsp1109I GCAGC 2 cut(s) 455, 477
LweI GCATC 1 cut(s) 343
MaeIII GTNAC 1 cut(s) 72
MalI GATC 2 cut(s) 6, 417
MboI GATC 2 cut(s) 4, 415
MboII GAAGA 3 cut(s) 24, 419, 572
MfeI CAATTG 1 cut(s) 573
MhlI GDGCHC 1 cut(s) 362
MluCI AATT 6 cut(s) 161, 185, 221, 476, 549, 573
MlyI GAGTC 1 cut(s) 80
MnlI CCTC 2 cut(s) 13, 556
MroI TCCGGA 1 cut(s) 157
MseI TTAA 1 cut(s) 530
MspA1I CMGCKG 1 cut(s) 468
MspI CCGG 1 cut(s) 158
MspR9I CCNGG 2 cut(s) 171, 315
MunI CAATTG 1 cut(s) 573
MvaI CCWGG 2 cut(s) 171, 315
MwoI GCNNNNNNNGC 1 cut(s) 510
NdeII GATC 2 cut(s) 4, 415
NlaIII CATG 2 cut(s) 111, 206
NmuCI GTSAC 1 cut(s) 72
PfeI GAWTC 3 cut(s) 238, 318, 422
PkrI GCNGC 2 cut(s) 467, 470
PleI GAGTC 1 cut(s) 79
PpsI GAGTC 1 cut(s) 79
PsiI TTATAA 1 cut(s) 263
Psp6I CCWGG 2 cut(s) 169, 313
PspGI CCWGG 2 cut(s) 169, 313
PvuII CAGCTG 1 cut(s) 468
RsaI GTAC 1 cut(s) 443
RsaNI GTAC 1 cut(s) 442
SaqAI TTAA 1 cut(s) 530
SatI GCNGC 2 cut(s) 466, 469
Sau3AI GATC 2 cut(s) 4, 415
ScaI AGTACT 1 cut(s) 443
SchI GAGTC 1 cut(s) 80
ScrFI CCNGG 2 cut(s) 171, 315
SduI GDGCHC 1 cut(s) 362
SetI ASST 6 cut(s) 172, 312, 316, 369, 470, 567
SfaNI GCATC 1 cut(s) 343
SmlI CTYRAG 1 cut(s) 305
SmoI CTYRAG 1 cut(s) 305
Sse9I AATT 6 cut(s) 161, 185, 221, 476, 549, 573
StyD4I CCNGG 2 cut(s) 169, 313
StyI CCWWGG 1 cut(s) 286
TaaI ACNGT 3 cut(s) 328, 510, 537
TaqI TCGA 3 cut(s) 414, 420, 425
TasI AATT 6 cut(s) 161, 185, 221, 476, 549, 573
TatI WGTACW 1 cut(s) 441
TfiI GAWTC 3 cut(s) 238, 318, 422
Tru1I TTAA 1 cut(s) 530
Tru9I TTAA 1 cut(s) 530
TscAI CASTG 2 cut(s) 515, 540
TseFI GTSAC 1 cut(s) 72
TseI GCWGC 2 cut(s) 465, 468
Tsp45I GTSAC 1 cut(s) 72
TspDTI ATGAA 2 cut(s) 198, 219
TspRI CASTG 2 cut(s) 515, 540
XapI RAATTY 3 cut(s) 161, 185, 221
ZrmI AGTACT 1 cut(s) 443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.