Rh4BG188900

F-box LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Reverse (-)
32891129 .. 32892709
1581 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG188900.1

Sequence Viewer

Length: 381 bp
ATGGAGGATCAACGAATGTGGGAAGACTTAAACACGGACTGCTTGGTGAATATTTTTGGAAGAGTTGGAATGGAGTCACTGCTTTTGGATATCCCTTTTGTGTGCAAGTCATGGTACAAAGCAAGCCTCATTCCTTCTTGCTGGCAATGTATCATTTTTCCCGACTTTTCAGCTGATCAAACTTTTGACTTTAGTCACCAAGGTGTTGAACCTAATACCATTTGTCAAAGATTTGTTTCTGAATTTCGAATTGATAAGAGTCATTTCTCCTCGACTGCTTTTATGAAGTGTGTCATCAATCATAGCCGAGGAAAAGTTACTTCTATCACACTACCTGCATATTGTACTCAAGAGGCAGTTGAGTTTGTTGCCCATGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

126

Amino Acids

14.48

Weight (kDa)

5.2

Isoelectric Point (pI)

31.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000637)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13771 FvH4_4g13861 FvH4_4g13862 FvH4_4g13890 FvH4_4g13890 FvH4_4g13890 FvH4_4g13901
malus_domestica MD04G1010000.v1.1
prunus_persica Prupe.1G009600_v2.0.a1 Prupe.1G010100_v2.0.a1 Prupe.1G012400_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G157400_v2.0.a1 Prupe.1G157500_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.2G138900_v2.0.a1 Prupe.6G053000_v2.0.a1
pyrus_communis pycom04g00810
rosa_chinensis RchiOBHm_Chr4g0414621 RchiOBHm_Chr4g0414631 RchiOBHm_Chr4g0414641 RchiOBHm_Chr4g0415011 RchiOBHm_Chr4g0415031
rosa_laevigata RLG00000008101 RLG00000008104 RLG00000008138 RLG00000008139 RLG00000008140 RLG00000008354
rosa_multiflora Rmu_co8247483.1_g000001 Rmu_sc0003611.1_g000009 Rmu_sc0003611.1_g000014 Rmu_sc0007034.1_g000033 Rmu_sc0007391.1_g000006 Rmu_sc0011778.1_g000017 Rmu_sc0016172.1_g000002
rosa_roxburghii Rroxscaffold_5G00358400 Rroxscaffold_5G00358430 Rroxscaffold_5G00358610 Rroxscaffold_5G00358740 Rroxscaffold_5G00358750 Rroxscaffold_5G00358770
rosa_rugosa Rorug04G0108700 Rorug04G0128400 Rorug04G0128500 Rorug04G0128900 Rorug04G0129000 Rorug04G0129100 Rorug04G0131400 Rorug04G0131500 Rorug04G0131600 Rorug04G0131800 Rorug04G0131900
rosa_samantha Rh4AG187100 Rh4AG187200 Rh4AG190700 Rh4AG191200 Rh4BG185800 Rh4BG186100 Rh4BG188700 Rh4BG188900 Rh4BG189300 Rh4CG199200 Rh4CG199700 Rh4CG201900 Rh4CG202100 Rh4DG185400 Rh4DG185700 Rh4DG189300 Rh4DG189700 Rh6CG237600
rosa_wichuraiana Rw4G015970 Rw4G016000 Rw4G016240 Rw4G016260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 343
AclWI GGATC 1 cut(s) 15
AcsI RAATTY 1 cut(s) 242
AfaI GTAC 2 cut(s) 116, 346
AgsI TTSAA 1 cut(s) 209
AleI CACNNNNGTG 1 cut(s) 201
AluBI AGCT 1 cut(s) 173
AluI AGCT 1 cut(s) 173
AlwI GGATC 1 cut(s) 15
ApoI RAATTY 1 cut(s) 242
AsuHPI GGTGA 2 cut(s) 58, 188
AsuII TTCGAA 1 cut(s) 247
BbsI GAAGAC 1 cut(s) 30
BclI TGATCA 1 cut(s) 175
BfuAI ACCTGC 1 cut(s) 343
BoxI GACNNNNGTC 1 cut(s) 192
BpiI GAAGAC 1 cut(s) 30
Bpu14I TTCGAA 1 cut(s) 247
BpuEI CTTGAG 1 cut(s) 333
BsaJI CCNNGG 2 cut(s) 199, 307
Bse3DI GCAATG 1 cut(s) 152
BseDI CCNNGG 2 cut(s) 199, 307
BseMI GCAATG 1 cut(s) 152
BseRI GAGGAG 1 cut(s) 259
Bsp119I TTCGAA 1 cut(s) 247
Bsp143I GATC 2 cut(s) 7, 175
BspMI ACCTGC 1 cut(s) 343
BspPI GGATC 1 cut(s) 15
BspT104I TTCGAA 1 cut(s) 247
BsrDI GCAATG 1 cut(s) 152
BssECI CCNNGG 2 cut(s) 199, 307
BssMI GATC 2 cut(s) 7, 175
BssT1I CCWWGG 1 cut(s) 199
Bst6I CTCTTC 1 cut(s) 55
BstBI TTCGAA 1 cut(s) 247
BstC8I GCNNGC 2 cut(s) 124, 143
BstKTI GATC 2 cut(s) 10, 178
BstMBI GATC 2 cut(s) 7, 175
BstPAI GACNNNNGTC 1 cut(s) 192
BstV2I GAAGAC 1 cut(s) 30
BtsI GCAGTG 1 cut(s) 77
BtsIMutI CAGTG 1 cut(s) 77
BveI ACCTGC 1 cut(s) 343
Cac8I GCNNGC 2 cut(s) 124, 143
Csp6I GTAC 2 cut(s) 115, 345
CspCI CAANNNNNGTGG 1 cut(s) 34
CviAII CATG 2 cut(s) 111, 374
CviJI RGCY 3 cut(s) 126, 173, 306
CviKI_1 RGCY 3 cut(s) 126, 173, 306
CviQI GTAC 2 cut(s) 115, 345
DpnI GATC 2 cut(s) 9, 177
DpnII GATC 2 cut(s) 7, 175
Eam1104I CTCTTC 1 cut(s) 55
EarI CTCTTC 1 cut(s) 55
Eco130I CCWWGG 1 cut(s) 199
Eco32I GATATC 1 cut(s) 91
EcoRV GATATC 1 cut(s) 91
EcoT14I CCWWGG 1 cut(s) 199
ErhI CCWWGG 1 cut(s) 199
FaeI CATG 2 cut(s) 114, 377
FaiI YATR 5 cut(s) 112, 284, 303, 340, 375
FatI CATG 2 cut(s) 110, 373
FbaI TGATCA 1 cut(s) 175
Hin1II CATG 2 cut(s) 114, 377
HinfI GANTC 2 cut(s) 74, 259
HphI GGTGA 2 cut(s) 58, 188
Hpy188I TCNGA 1 cut(s) 241
Hpy188III TCNNGA 2 cut(s) 161, 350
HpyAV CCTTC 1 cut(s) 144
HpyCH4V TGCA 2 cut(s) 105, 338
Hsp92II CATG 2 cut(s) 114, 377
Ksp22I TGATCA 1 cut(s) 175
Kzo9I GATC 2 cut(s) 7, 175
LpnPI CCDG 2 cut(s) 127, 348
MaeIII GTNAC 3 cut(s) 75, 194, 316
MalI GATC 2 cut(s) 9, 177
MboI GATC 2 cut(s) 7, 175
MboII GAAGA 2 cut(s) 35, 72
MluCI AATT 2 cut(s) 242, 249
MlyI GAGTC 2 cut(s) 83, 268
MmeI TCCRAC 1 cut(s) 46
MnlI CCTC 4 cut(s) 137, 280, 302, 346
MseI TTAA 1 cut(s) 29
MslI CAYNNNNRTG 1 cut(s) 201
MspA1I CMGCKG 1 cut(s) 173
NdeII GATC 2 cut(s) 7, 175
NlaIII CATG 2 cut(s) 114, 377
NmeAIII GCCGAG 1 cut(s) 332
NmuCI GTSAC 2 cut(s) 75, 194
NspV TTCGAA 1 cut(s) 247
OliI CACNNNNGTG 1 cut(s) 201
PleI GAGTC 2 cut(s) 82, 267
PpsI GAGTC 2 cut(s) 82, 267
PshAI GACNNNNGTC 1 cut(s) 192
PvuII CAGCTG 1 cut(s) 173
RsaI GTAC 2 cut(s) 116, 346
RsaNI GTAC 2 cut(s) 115, 345
RseI CAYNNNNRTG 1 cut(s) 201
SaqAI TTAA 1 cut(s) 29
Sau3AI GATC 2 cut(s) 7, 175
SchI GAGTC 2 cut(s) 83, 268
SetI ASST 4 cut(s) 175, 205, 214, 337
SfuI TTCGAA 1 cut(s) 247
SmiMI CAYNNNNRTG 1 cut(s) 201
SmlI CTYRAG 1 cut(s) 348
SmoI CTYRAG 1 cut(s) 348
Sse9I AATT 2 cut(s) 242, 249
SspI AATATT 1 cut(s) 52
StyI CCWWGG 1 cut(s) 199
TaqI TCGA 2 cut(s) 247, 272
TasI AATT 2 cut(s) 242, 249
TatI WGTACW 1 cut(s) 344
Tru1I TTAA 1 cut(s) 29
Tru9I TTAA 1 cut(s) 29
TscAI CASTG 1 cut(s) 84
TseFI GTSAC 2 cut(s) 75, 194
Tsp45I GTSAC 2 cut(s) 75, 194
TspDTI ATGAA 1 cut(s) 299
TspGWI ACGGA 1 cut(s) 50
TspRI CASTG 1 cut(s) 84
XapI RAATTY 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.