Rmu_sc0016172.1_g000002

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0016172.1
OG0000637
Physical Location & Seq
Reverse (-)
1593 .. 1877
285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0016172.1_g000002.1.cds

Sequence Viewer

Length: 285 bp
atggcaattgttagcttgctgcctaagcttaagcaattaatcttgaagaatgcaaatattgatcgggatgatcttgtgacgctactgcggggctgcaacgagcttgtgcgtttggatgtcagcaattgtataggttttgatgaggaagatgaagaaatagcaaagcttgcttctcatattgctgatttcagctctcagggttccacactagatgattatgatgattacgatggatatgaattgaattcccatgatgcaattttttatggatacggttccgattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

94

Amino Acids

10.51

Weight (kDa)

4.14

Isoelectric Point (pI)

40.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000637)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13771 FvH4_4g13861 FvH4_4g13862 FvH4_4g13890 FvH4_4g13890 FvH4_4g13890 FvH4_4g13901
malus_domestica MD04G1010000.v1.1
prunus_persica Prupe.1G009600_v2.0.a1 Prupe.1G010100_v2.0.a1 Prupe.1G012400_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G157400_v2.0.a1 Prupe.1G157500_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.2G138900_v2.0.a1 Prupe.6G053000_v2.0.a1
pyrus_communis pycom04g00810
rosa_chinensis RchiOBHm_Chr4g0414621 RchiOBHm_Chr4g0414631 RchiOBHm_Chr4g0414641 RchiOBHm_Chr4g0415011 RchiOBHm_Chr4g0415031
rosa_laevigata RLG00000008101 RLG00000008104 RLG00000008138 RLG00000008139 RLG00000008140 RLG00000008354
rosa_multiflora Rmu_co8247483.1_g000001 Rmu_sc0003611.1_g000009 Rmu_sc0003611.1_g000014 Rmu_sc0007034.1_g000033 Rmu_sc0007391.1_g000006 Rmu_sc0011778.1_g000017 Rmu_sc0016172.1_g000002
rosa_roxburghii Rroxscaffold_5G00358400 Rroxscaffold_5G00358430 Rroxscaffold_5G00358610 Rroxscaffold_5G00358740 Rroxscaffold_5G00358750 Rroxscaffold_5G00358770
rosa_rugosa Rorug04G0108700 Rorug04G0128400 Rorug04G0128500 Rorug04G0128900 Rorug04G0129000 Rorug04G0129100 Rorug04G0131400 Rorug04G0131500 Rorug04G0131600 Rorug04G0131800 Rorug04G0131900
rosa_samantha Rh4AG187100 Rh4AG187200 Rh4AG190700 Rh4AG191200 Rh4BG185800 Rh4BG186100 Rh4BG188700 Rh4BG188900 Rh4BG189300 Rh4CG199200 Rh4CG199700 Rh4CG201900 Rh4CG202100 Rh4DG185400 Rh4DG185700 Rh4DG189300 Rh4DG189700 Rh6CG237600
rosa_wichuraiana Rw4G015970 Rw4G016000 Rw4G016240 Rw4G016260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 88
AcsI RAATTY 1 cut(s) 244
AflII CTTAAG 1 cut(s) 29
AgsI TTSAA 2 cut(s) 46, 244
AluBI AGCT 5 cut(s) 15, 28, 103, 166, 192
AluI AGCT 5 cut(s) 15, 28, 103, 166, 192
ApeKI GCWGC 2 cut(s) 19, 93
ApoI RAATTY 1 cut(s) 244
AseI ATTAAT 1 cut(s) 38
BbvI GCAGC 2 cut(s) 6, 80
BccI CCATC 1 cut(s) 224
BciVI GTATCC 1 cut(s) 263
BfaI CTAG 1 cut(s) 209
BfrI CTTAAG 1 cut(s) 29
BfuI GTATCC 1 cut(s) 263
BisI GCNGC 2 cut(s) 20, 94
BlsI GCNGC 2 cut(s) 21, 95
BmiI GGNNCC 2 cut(s) 202, 277
BmsI GCATC 1 cut(s) 244
Bpu10I CCTNAGC 1 cut(s) 24
BseGI GGATG 2 cut(s) 73, 121
BseMII CTCAG 1 cut(s) 209
BseXI GCAGC 2 cut(s) 6, 80
BsmI GAATGC 1 cut(s) 55
Bsp143I GATC 2 cut(s) 61, 70
BspACI CCGC 1 cut(s) 88
BspCNI CTCAG 1 cut(s) 208
BspLI GGNNCC 2 cut(s) 202, 277
BspTI CTTAAG 1 cut(s) 29
BssMI GATC 2 cut(s) 61, 70
Bst4CI ACNGT 1 cut(s) 275
BstAFI CTTAAG 1 cut(s) 29
BstAPI GCANNNNNTGC 1 cut(s) 167
BstC8I GCNNGC 2 cut(s) 17, 168
BstDEI CTNAG 2 cut(s) 24, 195
BstF5I GGATG 2 cut(s) 73, 121
BstKTI GATC 2 cut(s) 64, 73
BstMBI GATC 2 cut(s) 61, 70
BstMWI GCNNNNNNNGC 2 cut(s) 25, 167
BstV1I GCAGC 2 cut(s) 6, 80
BsuI GTATCC 1 cut(s) 263
BtsCI GGATG 2 cut(s) 73, 121
Cac8I GCNNGC 2 cut(s) 17, 168
CseI GACGC 1 cut(s) 88
CviAII CATG 1 cut(s) 251
CviJI RGCY 6 cut(s) 15, 28, 93, 103, 166, 192
CviKI_1 RGCY 6 cut(s) 15, 28, 93, 103, 166, 192
DdeI CTNAG 2 cut(s) 24, 195
DpnI GATC 2 cut(s) 63, 72
DpnII GATC 2 cut(s) 61, 70
EcoRI GAATTC 1 cut(s) 244
FaeI CATG 1 cut(s) 254
FaiI YATR 6 cut(s) 131, 177, 219, 237, 252, 267
FatI CATG 1 cut(s) 250
FauI CCCGC 1 cut(s) 81
Fnu4HI GCNGC 2 cut(s) 20, 94
FokI GGATG 2 cut(s) 80, 128
Fsp4HI GCNGC 2 cut(s) 20, 94
FspBI CTAG 1 cut(s) 209
GluI GCNGC 2 cut(s) 20, 94
HgaI GACGC 1 cut(s) 88
Hin1II CATG 1 cut(s) 254
HindIII AAGCTT 2 cut(s) 26, 164
Hpy188I TCNGA 1 cut(s) 280
Hpy188III TCNNGA 2 cut(s) 43, 65
HpyCH4III ACNGT 1 cut(s) 275
HpyCH4V TGCA 3 cut(s) 53, 96, 257
HpyF10VI GCNNNNNNNGC 2 cut(s) 25, 167
HpyF3I CTNAG 2 cut(s) 24, 195
Hsp92II CATG 1 cut(s) 254
Kzo9I GATC 2 cut(s) 61, 70
LpnPI CCDG 1 cut(s) 182
Lsp1109I GCAGC 2 cut(s) 6, 80
LweI GCATC 1 cut(s) 244
MaeI CTAG 1 cut(s) 209
MaeIII GTNAC 1 cut(s) 76
MalI GATC 2 cut(s) 63, 72
MboI GATC 2 cut(s) 61, 70
MboII GAAGA 3 cut(s) 58, 158, 164
MfeI CAATTG 2 cut(s) 6, 124
MluCI AATT 6 cut(s) 6, 35, 124, 239, 244, 258
MnlI CCTC 1 cut(s) 136
MseI TTAA 2 cut(s) 30, 38
MspCI CTTAAG 1 cut(s) 29
MunI CAATTG 2 cut(s) 6, 124
Mva1269I GAATGC 1 cut(s) 55
MwoI GCNNNNNNNGC 2 cut(s) 25, 167
NdeII GATC 2 cut(s) 61, 70
NlaIII CATG 1 cut(s) 254
NlaIV GGNNCC 2 cut(s) 202, 277
NmuCI GTSAC 1 cut(s) 76
PctI GAATGC 1 cut(s) 55
PkrI GCNGC 2 cut(s) 21, 95
PshBI ATTAAT 1 cut(s) 38
PspN4I GGNNCC 2 cut(s) 202, 277
SaqAI TTAA 2 cut(s) 30, 38
SatI GCNGC 2 cut(s) 20, 94
Sau3AI GATC 2 cut(s) 61, 70
SetI ASST 6 cut(s) 17, 30, 105, 136, 168, 194
SfaNI GCATC 1 cut(s) 244
SmlI CTYRAG 1 cut(s) 29
SmoI CTYRAG 1 cut(s) 29
Sse9I AATT 6 cut(s) 6, 35, 124, 239, 244, 258
SsiI CCGC 1 cut(s) 88
SspI AATATT 1 cut(s) 58
SspMI CTAG 1 cut(s) 209
TaaI ACNGT 1 cut(s) 275
TasI AATT 6 cut(s) 6, 35, 124, 239, 244, 258
Tru1I TTAA 2 cut(s) 30, 38
Tru9I TTAA 2 cut(s) 30, 38
TseFI GTSAC 1 cut(s) 76
TseI GCWGC 2 cut(s) 19, 93
Tsp45I GTSAC 1 cut(s) 76
TspDTI ATGAA 2 cut(s) 165, 252
Vha464I CTTAAG 1 cut(s) 29
VspI ATTAAT 1 cut(s) 38
XapI RAATTY 1 cut(s) 244
XspI CTAG 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.