Prupe.1G157500_v2.0.a1

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000637
Physical Location & Seq
Forward (+)
12502139 .. 12503197
1059 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G157500.1

Sequence Viewer

Length: 735 bp
ATGGATGAAAGAAGATGGGAAGACTTAAACATAGACTGTATGGTGAATATTTTGGGAAGAGTTGGTATGGAGTCGCTGCTTTTGGATGTGCCTTTCGTATGCAAGTCGTGTCACTTCTCGACCACTGCGTTTATTAAGTTCGTCGTCAATCGTAGCAAAGGACATGCTACTGCTCTCAGGCTACCTCCATATGCTTCAGAAACAGACTTGAAATATGTTTCAGATGTGTGTGGTGACCTCAAGAGTGTTGGATTTCCTGCGGATTTAGTTTACGACAAATCAGGTGTAATAACAGAGCTGATTGGTAAGTGGAAACGTTTGGAGTGGTTGACGTTGGGAAGCAGCTATGATTTGGTGAAAATCCTCTCACAGATCAGCATTCACTGCAAAGATTTTTGGGGCTTACGTGTGTCTAATTCTAATATTTTTAACGATGAGGCTATTGCAATTGTCAACTTCCTGCCTAAGATTAAGCATTTGATCTTGAGGGATGCACATATTGATCGGGATGCTCTTATGAAGTTACTGCAAGGTTGCACGGAGCTTCAGGTTCTGGATGTCCGTGATTGTATTGGTTTTAGTGAGGATGATGGGGAAATTTTAAAGCTTGCTTCTCATATTACTAATTTCAGCTGCAAGGGCTCTAGAGAGTATGATTATGATGATGATGGTTTCTATGAAGGAGGCAGTTTTTTGTTTGACGATGTGGTATATGATGGATATTATTCTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

245

Amino Acids

27.67

Weight (kDa)

4.85

Isoelectric Point (pI)

53.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000637)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13771 FvH4_4g13861 FvH4_4g13862 FvH4_4g13890 FvH4_4g13890 FvH4_4g13890 FvH4_4g13901
malus_domestica MD04G1010000.v1.1
prunus_persica Prupe.1G009600_v2.0.a1 Prupe.1G010100_v2.0.a1 Prupe.1G012400_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G157400_v2.0.a1 Prupe.1G157500_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.2G138900_v2.0.a1 Prupe.6G053000_v2.0.a1
pyrus_communis pycom04g00810
rosa_chinensis RchiOBHm_Chr4g0414621 RchiOBHm_Chr4g0414631 RchiOBHm_Chr4g0414641 RchiOBHm_Chr4g0415011 RchiOBHm_Chr4g0415031
rosa_laevigata RLG00000008101 RLG00000008104 RLG00000008138 RLG00000008139 RLG00000008140 RLG00000008354
rosa_multiflora Rmu_co8247483.1_g000001 Rmu_sc0003611.1_g000009 Rmu_sc0003611.1_g000014 Rmu_sc0007034.1_g000033 Rmu_sc0007391.1_g000006 Rmu_sc0011778.1_g000017 Rmu_sc0016172.1_g000002
rosa_roxburghii Rroxscaffold_5G00358400 Rroxscaffold_5G00358430 Rroxscaffold_5G00358610 Rroxscaffold_5G00358740 Rroxscaffold_5G00358750 Rroxscaffold_5G00358770
rosa_rugosa Rorug04G0108700 Rorug04G0128400 Rorug04G0128500 Rorug04G0128900 Rorug04G0129000 Rorug04G0129100 Rorug04G0131400 Rorug04G0131500 Rorug04G0131600 Rorug04G0131800 Rorug04G0131900
rosa_samantha Rh4AG187100 Rh4AG187200 Rh4AG190700 Rh4AG191200 Rh4BG185800 Rh4BG186100 Rh4BG188700 Rh4BG188900 Rh4BG189300 Rh4CG199200 Rh4CG199700 Rh4CG201900 Rh4CG202100 Rh4DG185400 Rh4DG185700 Rh4DG189300 Rh4DG189700 Rh6CG237600
rosa_wichuraiana Rw4G015970 Rw4G016000 Rw4G016240 Rw4G016260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 260
AclI AACGTT 1 cut(s) 316
AcsI RAATTY 1 cut(s) 597
AcuI CTGAAG 2 cut(s) 180, 530
AflIII ACRYGT 1 cut(s) 406
AgsI TTSAA 1 cut(s) 211
AluBI AGCT 5 cut(s) 298, 345, 544, 607, 633
AluI AGCT 5 cut(s) 298, 345, 544, 607, 633
AlwNI CAGNNNCTG 1 cut(s) 553
ApeKI GCWGC 3 cut(s) 76, 342, 633
ApoI RAATTY 1 cut(s) 597
AsuHPI GGTGA 3 cut(s) 55, 245, 367
BanII GRGCYC 1 cut(s) 644
BbsI GAAGAC 1 cut(s) 27
BbvI GCAGC 3 cut(s) 63, 354, 620
BccI CCATC 4 cut(s) 9, 584, 662, 710
BfaI CTAG 1 cut(s) 645
BisI GCNGC 3 cut(s) 77, 343, 634
BlsI GCNGC 3 cut(s) 78, 344, 635
BmsI GCATC 2 cut(s) 481, 499
BpiI GAAGAC 1 cut(s) 27
BpuEI CTTGAG 2 cut(s) 224, 505
BsaAI YACGTR 1 cut(s) 407
BseGI GGATG 6 cut(s) 10, 91, 496, 514, 562, 592
BseMII CTCAG 1 cut(s) 190
BseXI GCAGC 3 cut(s) 63, 354, 620
BsmI GAATGC 1 cut(s) 378
Bsp1286I GDGCHC 1 cut(s) 644
Bsp143I GATC 3 cut(s) 372, 480, 502
BspACI CCGC 1 cut(s) 260
BspCNI CTCAG 1 cut(s) 189
BssMI GATC 3 cut(s) 372, 480, 502
Bst4CI ACNGT 1 cut(s) 38
Bst6I CTCTTC 1 cut(s) 52
BstAPI GCANNNNNTGC 1 cut(s) 384
BstBAI YACGTR 1 cut(s) 407
BstC8I GCNNGC 1 cut(s) 609
BstDEI CTNAG 2 cut(s) 176, 465
BstEII GGTNACC 1 cut(s) 233
BstF5I GGATG 6 cut(s) 10, 91, 496, 514, 562, 592
BstKTI GATC 3 cut(s) 375, 483, 505
BstMBI GATC 3 cut(s) 372, 480, 502
BstMWI GCNNNNNNNGC 2 cut(s) 384, 639
BstNSI RCATGY 1 cut(s) 167
BstPI GGTNACC 1 cut(s) 233
BstV1I GCAGC 3 cut(s) 63, 354, 620
BstV2I GAAGAC 1 cut(s) 27
BtsCI GGATG 6 cut(s) 10, 91, 496, 514, 562, 592
BtsI GCAGTG 2 cut(s) 123, 382
BtsIMutI CAGTG 2 cut(s) 123, 382
Cac8I GCNNGC 1 cut(s) 609
CaiI CAGNNNCTG 1 cut(s) 553
CviAII CATG 1 cut(s) 164
CviJI RGCY 9 cut(s) 181, 298, 345, 402, 440, 544, 607, 633, 642
CviKI_1 RGCY 9 cut(s) 181, 298, 345, 402, 440, 544, 607, 633, 642
DdeI CTNAG 2 cut(s) 176, 465
DpnI GATC 3 cut(s) 374, 482, 504
DpnII GATC 3 cut(s) 372, 480, 502
DraI TTTAAA 1 cut(s) 603
Eam1104I CTCTTC 1 cut(s) 52
EarI CTCTTC 1 cut(s) 52
Eco24I GRGCYC 1 cut(s) 644
Eco57I CTGAAG 2 cut(s) 180, 530
Eco91I GGTNACC 1 cut(s) 233
EcoO65I GGTNACC 1 cut(s) 233
EcoT38I GRGCYC 1 cut(s) 644
FaeI CATG 1 cut(s) 167
FatI CATG 1 cut(s) 163
FauNDI CATATG 1 cut(s) 190
Fnu4HI GCNGC 3 cut(s) 77, 343, 634
FokI GGATG 6 cut(s) 17, 98, 503, 521, 569, 599
FriOI GRGCYC 1 cut(s) 644
Fsp4HI GCNGC 3 cut(s) 77, 343, 634
FspBI CTAG 1 cut(s) 645
GluI GCNGC 3 cut(s) 77, 343, 634
Hin1II CATG 1 cut(s) 167
HincII GTYRAC 2 cut(s) 330, 454
HindII GTYRAC 2 cut(s) 330, 454
HindIII AAGCTT 1 cut(s) 605
HinfI GANTC 1 cut(s) 71
HphI GGTGA 3 cut(s) 55, 245, 367
Hpy166II GTNNAC 3 cut(s) 271, 330, 454
Hpy188I TCNGA 3 cut(s) 199, 223, 730
Hpy188III TCNNGA 6 cut(s) 118, 241, 484, 506, 554, 645
Hpy8I GTNNAC 3 cut(s) 271, 330, 454
Hpy99I CGWCG 1 cut(s) 146
HpyAV CCTTC 1 cut(s) 674
HpyCH4III ACNGT 1 cut(s) 38
HpyCH4IV ACGT 3 cut(s) 316, 332, 406
HpyCH4V TGCA 7 cut(s) 102, 387, 446, 494, 529, 537, 636
HpyF10VI GCNNNNNNNGC 2 cut(s) 384, 639
HpyF3I CTNAG 2 cut(s) 176, 465
HpySE526I ACGT 3 cut(s) 316, 332, 406
Hsp92II CATG 1 cut(s) 167
Kzo9I GATC 3 cut(s) 372, 480, 502
LmnI GCTCC 1 cut(s) 541
LpnPI CCDG 6 cut(s) 163, 267, 270, 473, 533, 539
Lsp1109I GCAGC 3 cut(s) 63, 354, 620
LweI GCATC 2 cut(s) 481, 499
MaeI CTAG 1 cut(s) 645
MaeII ACGT 3 cut(s) 316, 332, 406
MaeIII GTNAC 3 cut(s) 110, 233, 522
MalI GATC 3 cut(s) 374, 482, 504
MboI GATC 3 cut(s) 372, 480, 502
MboII GAAGA 3 cut(s) 24, 32, 69
MfeI CAATTG 1 cut(s) 447
MhlI GDGCHC 1 cut(s) 644
MluCI AATT 4 cut(s) 415, 447, 597, 625
MlyI GAGTC 1 cut(s) 80
MmeI TCCRAC 1 cut(s) 229
MnlI CCTC 7 cut(s) 195, 248, 374, 430, 480, 577, 677
MseI TTAA 5 cut(s) 26, 135, 429, 471, 602
MspA1I CMGCKG 1 cut(s) 633
MunI CAATTG 1 cut(s) 447
Mva1269I GAATGC 1 cut(s) 378
MwoI GCNNNNNNNGC 2 cut(s) 384, 639
NdeI CATATG 1 cut(s) 190
NdeII GATC 3 cut(s) 372, 480, 502
NlaIII CATG 1 cut(s) 167
NmuCI GTSAC 2 cut(s) 110, 233
NspI RCATGY 1 cut(s) 167
PcsI WCGNNNNNNNCGW 1 cut(s) 125
PctI GAATGC 1 cut(s) 378
PkrI GCNGC 3 cut(s) 78, 344, 635
PleI GAGTC 1 cut(s) 79
PpsI GAGTC 1 cut(s) 79
Ppu21I YACGTR 1 cut(s) 407
Psp1406I AACGTT 1 cut(s) 316
PspEI GGTNACC 1 cut(s) 233
PstNI CAGNNNCTG 1 cut(s) 553
PvuII CAGCTG 1 cut(s) 633
SaqAI TTAA 5 cut(s) 26, 135, 429, 471, 602
SatI GCNGC 3 cut(s) 77, 343, 634
Sau3AI GATC 3 cut(s) 372, 480, 502
SchI GAGTC 1 cut(s) 80
SduI GDGCHC 1 cut(s) 644
SfaNI GCATC 2 cut(s) 481, 499
SmlI CTYRAG 2 cut(s) 239, 484
SmoI CTYRAG 2 cut(s) 239, 484
Sse9I AATT 4 cut(s) 415, 447, 597, 625
SsiI CCGC 1 cut(s) 260
SspI AATATT 2 cut(s) 49, 424
SspMI CTAG 1 cut(s) 645
TaaI ACNGT 1 cut(s) 38
TaiI ACGT 3 cut(s) 319, 335, 409
TaqI TCGA 1 cut(s) 119
TasI AATT 4 cut(s) 415, 447, 597, 625
Tru1I TTAA 5 cut(s) 26, 135, 429, 471, 602
Tru9I TTAA 5 cut(s) 26, 135, 429, 471, 602
TscAI CASTG 2 cut(s) 130, 389
TseFI GTSAC 2 cut(s) 110, 233
TseI GCWGC 3 cut(s) 76, 342, 633
Tsp45I GTSAC 2 cut(s) 110, 233
TspDTI ATGAA 3 cut(s) 21, 533, 693
TspGWI ACGGA 2 cut(s) 551, 554
TspRI CASTG 2 cut(s) 130, 389
XapI RAATTY 1 cut(s) 597
XbaI TCTAGA 1 cut(s) 644
XceI RCATGY 1 cut(s) 167
XspI CTAG 1 cut(s) 645
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.