Rroxscaffold_5G00358430

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000637
Physical Location & Seq
Reverse (-)
38521461 .. 38523529
2069 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00358430.1

Sequence Viewer

Length: 870 bp
ATGGAAGATGAACGAAAATGGGAGGAATTAGAGGTTGACTGTTTGATGAATATATTTGGAAGAGTGGGAATGGAGTCATTGCTTTTGGACGTCCCTTTCGTATGCAAGTCATGGTACAGAGCAACCCTCAACCCTTCATGCTGGCAATATCTCAAATTTCCTGATCTTACTATTGACGATGTTTTTGACTTTGATGAAGACGGATATTGGTGTACCCTTATTCAAAGATTTATAGGTGAGTATCGACTTGATGAGACCCGTTTCTCGGTGACTGCATTTGTTAAGTTTATAATCAGTCATAGCAAAGGAAAGGCTATTTACCTCAGGCTATCCCCATGTGCTTCAGAAGATGTCTTGAAATATGCTGCAGATGAGTGTCCTGCGTTAAAGCTTCTTGCATTGCCCAGCCGTTTAGTGAACCGTACGTCAAGCATAATTCAAGAAATAATTGGAAAGTGGACAAATTTGGAGTACTTGGTATTGGGAAGTAGCTATAATTTGGAGAACTTCCTTGGACAGATCTCCATTCACTGCAAGAACTTGTGTCTTTTGAATGTGGCTAATGCAACCATTGGGAAAGATAAAGCAATGGCAATTGTTAGCTTGCTGCCTAAGCTTAAGCAATTGATCTTGAAGAAAGCAAATATTGATCGGGATGCTCTTGTGACGCTACTGCAGGGCTGCAACGAGCTTGAGCGTTTGGATGTCAGCAATTGTATAGGTTTTGATGAGGGAGATGAAGAAATCGCAAAGCTTGCTTCTCATATTGCTAATTTCAGCTCTGGGGGTTCTACACTATATTATTATGATGATTACGATGACGGACATATTTCCCATGATGAAATGGTTTATGGATATGGTTCCGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

289

Amino Acids

32.81

Weight (kDa)

4.74

Isoelectric Point (pI)

36.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 167 - 239 6.7e-06 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000637)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13771 FvH4_4g13861 FvH4_4g13862 FvH4_4g13890 FvH4_4g13890 FvH4_4g13890 FvH4_4g13901
malus_domestica MD04G1010000.v1.1
prunus_persica Prupe.1G009600_v2.0.a1 Prupe.1G010100_v2.0.a1 Prupe.1G012400_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G157400_v2.0.a1 Prupe.1G157500_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.2G138900_v2.0.a1 Prupe.6G053000_v2.0.a1
pyrus_communis pycom04g00810
rosa_chinensis RchiOBHm_Chr4g0414621 RchiOBHm_Chr4g0414631 RchiOBHm_Chr4g0414641 RchiOBHm_Chr4g0415011 RchiOBHm_Chr4g0415031
rosa_laevigata RLG00000008101 RLG00000008104 RLG00000008138 RLG00000008139 RLG00000008140 RLG00000008354
rosa_multiflora Rmu_co8247483.1_g000001 Rmu_sc0003611.1_g000009 Rmu_sc0003611.1_g000014 Rmu_sc0007034.1_g000033 Rmu_sc0007391.1_g000006 Rmu_sc0011778.1_g000017 Rmu_sc0016172.1_g000002
rosa_roxburghii Rroxscaffold_5G00358400 Rroxscaffold_5G00358430 Rroxscaffold_5G00358610 Rroxscaffold_5G00358740 Rroxscaffold_5G00358750 Rroxscaffold_5G00358770
rosa_rugosa Rorug04G0108700 Rorug04G0128400 Rorug04G0128500 Rorug04G0128900 Rorug04G0129000 Rorug04G0129100 Rorug04G0131400 Rorug04G0131500 Rorug04G0131600 Rorug04G0131800 Rorug04G0131900
rosa_samantha Rh4AG187100 Rh4AG187200 Rh4AG190700 Rh4AG191200 Rh4BG185800 Rh4BG186100 Rh4BG188700 Rh4BG188900 Rh4BG189300 Rh4CG199200 Rh4CG199700 Rh4CG201900 Rh4CG202100 Rh4DG185400 Rh4DG185700 Rh4DG189300 Rh4DG189700 Rh6CG237600
rosa_wichuraiana Rw4G015970 Rw4G016000 Rw4G016240 Rw4G016260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 290
AatII GACGTC 1 cut(s) 93
AcsI RAATTY 2 cut(s) 155, 463
AcuI CTGAAG 1 cut(s) 327
AcyI GRCGYC 1 cut(s) 90
AfaI GTAC 4 cut(s) 116, 214, 424, 473
AfiI CCNNNNNNNGG 1 cut(s) 265
AflII CTTAAG 1 cut(s) 617
AgsI TTSAA 5 cut(s) 224, 358, 440, 553, 634
AluBI AGCT 7 cut(s) 391, 492, 603, 616, 691, 754, 780
AluI AGCT 7 cut(s) 391, 492, 603, 616, 691, 754, 780
Alw26I GTCTC 1 cut(s) 248
ApeKI GCWGC 3 cut(s) 365, 607, 681
ApoI RAATTY 2 cut(s) 155, 463
ArsI GACNNNNNNTTYG 4 cut(s) 80, 112, 167, 199
AsuHPI GGTGA 2 cut(s) 248, 280
AxyI CCTNAGG 1 cut(s) 323
BbsI GAAGAC 1 cut(s) 204
BbvI GCAGC 3 cut(s) 352, 594, 668
BceAI ACGGC 1 cut(s) 393
BcoDI GTCTC 1 cut(s) 248
BfmI CTRYAG 2 cut(s) 366, 674
BfrI CTTAAG 1 cut(s) 617
BglII AGATCT 1 cut(s) 519
BisI GCNGC 3 cut(s) 366, 608, 682
BlsI GCNGC 3 cut(s) 367, 609, 683
BmcAI AGTACT 1 cut(s) 473
BmiI GGNNCC 1 cut(s) 862
BmsI GCATC 1 cut(s) 646
BpiI GAAGAC 1 cut(s) 204
BplI GAGNNNNNCTC 2 cut(s) 111, 143
Bpu10I CCTNAGC 1 cut(s) 612
BpuEI CTTGAG 1 cut(s) 713
BsaHI GRCGYC 1 cut(s) 90
BsaI GGTCTC 1 cut(s) 248
BsaJI CCNNGG 1 cut(s) 511
Bsc4I CCNNNNNNNGG 1 cut(s) 265
Bse21I CCTNAGG 1 cut(s) 323
Bse3DI GCAATG 3 cut(s) 77, 398, 594
BseDI CCNNGG 1 cut(s) 511
BseGI GGATG 2 cut(s) 661, 709
BseLI CCNNNNNNNGG 1 cut(s) 265
BseMI GCAATG 3 cut(s) 77, 398, 594
BseMII CTCAG 1 cut(s) 337
BseXI GCAGC 3 cut(s) 352, 594, 668
BseYI CCCAGC 1 cut(s) 404
BsiWI CGTACG 1 cut(s) 422
BslFI GGGAC 1 cut(s) 77
BslI CCNNNNNNNGG 1 cut(s) 265
BsmAI GTCTC 1 cut(s) 248
BsmFI GGGAC 1 cut(s) 77
Bso31I GGTCTC 1 cut(s) 248
Bsp143I GATC 4 cut(s) 163, 519, 627, 649
BspCNI CTCAG 1 cut(s) 336
BspLI GGNNCC 1 cut(s) 862
BspMAI CTGCAG 2 cut(s) 370, 678
BspTI CTTAAG 1 cut(s) 617
BspTNI GGTCTC 1 cut(s) 248
BsrDI GCAATG 3 cut(s) 77, 398, 594
BssECI CCNNGG 1 cut(s) 511
BssMI GATC 4 cut(s) 163, 519, 627, 649
BssNI GRCGYC 1 cut(s) 90
BssT1I CCWWGG 1 cut(s) 511
Bst4CI ACNGT 2 cut(s) 41, 422
Bst6I CTCTTC 1 cut(s) 55
BstACI GRCGYC 1 cut(s) 90
BstAFI CTTAAG 1 cut(s) 617
BstAPI GCANNNNNTGC 1 cut(s) 755
BstC8I GCNNGC 3 cut(s) 143, 605, 756
BstDEI CTNAG 2 cut(s) 323, 612
BstF5I GGATG 2 cut(s) 661, 709
BstKTI GATC 4 cut(s) 166, 522, 630, 652
BstMAI GTCTC 1 cut(s) 248
BstMBI GATC 4 cut(s) 163, 519, 627, 649
BstMWI GCNNNNNNNGC 2 cut(s) 613, 755
BstSFI CTRYAG 2 cut(s) 366, 674
BstV1I GCAGC 3 cut(s) 352, 594, 668
BstV2I GAAGAC 1 cut(s) 204
BstX2I RGATCY 1 cut(s) 519
BstYI RGATCY 1 cut(s) 519
Bsu36I CCTNAGG 1 cut(s) 323
BtsCI GGATG 2 cut(s) 661, 709
BtsI GCAGTG 1 cut(s) 529
BtsIMutI CAGTG 1 cut(s) 529
Cac8I GCNNGC 3 cut(s) 143, 605, 756
CseI GACGC 1 cut(s) 676
Csp6I GTAC 4 cut(s) 115, 213, 423, 472
CviAII CATG 4 cut(s) 111, 138, 336, 836
CviQI GTAC 4 cut(s) 115, 213, 423, 472
DdeI CTNAG 2 cut(s) 323, 612
DpnI GATC 4 cut(s) 165, 521, 629, 651
DpnII GATC 4 cut(s) 163, 519, 627, 649
Eam1104I CTCTTC 1 cut(s) 55
EarI CTCTTC 1 cut(s) 55
Eco130I CCWWGG 1 cut(s) 511
Eco31I GGTCTC 1 cut(s) 248
Eco57I CTGAAG 1 cut(s) 327
Eco81I CCTNAGG 1 cut(s) 323
EcoT14I CCWWGG 1 cut(s) 511
ErhI CCWWGG 1 cut(s) 511
FaeI CATG 4 cut(s) 114, 141, 339, 839
FaqI GGGAC 1 cut(s) 77
FatI CATG 4 cut(s) 110, 137, 335, 835
Fnu4HI GCNGC 3 cut(s) 366, 608, 682
FokI GGATG 2 cut(s) 668, 716
Fsp4HI GCNGC 3 cut(s) 366, 608, 682
GluI GCNGC 3 cut(s) 366, 608, 682
GsaI CCCAGC 1 cut(s) 408
HgaI GACGC 1 cut(s) 676
Hin1I GRCGYC 1 cut(s) 90
Hin1II CATG 4 cut(s) 114, 141, 339, 839
HincII GTYRAC 1 cut(s) 37
HindII GTYRAC 1 cut(s) 37
HindIII AAGCTT 3 cut(s) 389, 614, 752
HinfI GANTC 1 cut(s) 74
HphI GGTGA 2 cut(s) 248, 280
Hpy166II GTNNAC 4 cut(s) 37, 213, 418, 459
Hpy188I TCNGA 2 cut(s) 346, 865
Hpy188III TCNNGA 5 cut(s) 161, 355, 440, 631, 653
Hpy8I GTNNAC 4 cut(s) 37, 213, 418, 459
HpyAV CCTTC 1 cut(s) 144
HpyCH4III ACNGT 2 cut(s) 41, 422
HpyCH4IV ACGT 2 cut(s) 90, 425
HpyCH4V TGCA 8 cut(s) 105, 275, 368, 398, 534, 566, 676, 684
HpyF10VI GCNNNNNNNGC 2 cut(s) 613, 755
HpyF3I CTNAG 2 cut(s) 323, 612
HpySE526I ACGT 2 cut(s) 90, 425
Hsp92I GRCGYC 1 cut(s) 90
Hsp92II CATG 4 cut(s) 114, 141, 339, 839
Kzo9I GATC 4 cut(s) 163, 519, 627, 649
LpnPI CCDG 7 cut(s) 127, 174, 310, 393, 418, 662, 768
Lsp1109I GCAGC 3 cut(s) 352, 594, 668
LweI GCATC 1 cut(s) 646
MaeII ACGT 2 cut(s) 90, 425
MaeIII GTNAC 2 cut(s) 268, 664
MalI GATC 4 cut(s) 165, 521, 629, 651
MboI GATC 4 cut(s) 163, 519, 627, 649
MboII GAAGA 6 cut(s) 17, 72, 209, 359, 646, 752
MfeI CAATTG 3 cut(s) 594, 623, 712
MflI RGATCY 1 cut(s) 519
MlyI GAGTC 1 cut(s) 83
MnlI CCTC 5 cut(s) 16, 25, 137, 332, 724
MseI TTAA 4 cut(s) 282, 386, 618, 868
MspCI CTTAAG 1 cut(s) 617
MunI CAATTG 3 cut(s) 594, 623, 712
MwoI GCNNNNNNNGC 2 cut(s) 613, 755
NdeII GATC 4 cut(s) 163, 519, 627, 649
NlaIII CATG 4 cut(s) 114, 141, 339, 839
NlaIV GGNNCC 1 cut(s) 862
NmuCI GTSAC 2 cut(s) 268, 664
PcsI WCGNNNNNNNCGW 1 cut(s) 96
Pfl23II CGTACG 1 cut(s) 422
PkrI GCNGC 3 cut(s) 367, 609, 683
PleI GAGTC 1 cut(s) 82
PpsI GAGTC 1 cut(s) 82
PsiI TTATAA 1 cut(s) 290
PspFI CCCAGC 1 cut(s) 404
PspLI CGTACG 1 cut(s) 422
PspN4I GGNNCC 1 cut(s) 862
PstI CTGCAG 2 cut(s) 370, 678
PsuI RGATCY 1 cut(s) 519
RsaI GTAC 4 cut(s) 116, 214, 424, 473
RsaNI GTAC 4 cut(s) 115, 213, 423, 472
SaqAI TTAA 4 cut(s) 282, 386, 618, 868
SatI GCNGC 3 cut(s) 366, 608, 682
Sau3AI GATC 4 cut(s) 163, 519, 627, 649
ScaI AGTACT 1 cut(s) 473
SchI GAGTC 1 cut(s) 83
SfaNI GCATC 1 cut(s) 646
SfcI CTRYAG 2 cut(s) 366, 674
SmlI CTYRAG 2 cut(s) 617, 692
SmoI CTYRAG 2 cut(s) 617, 692
SspI AATATT 1 cut(s) 646
StyI CCWWGG 1 cut(s) 511
TaaI ACNGT 2 cut(s) 41, 422
TaiI ACGT 2 cut(s) 93, 428
TaqI TCGA 1 cut(s) 244
TatI WGTACW 1 cut(s) 471
Tru1I TTAA 4 cut(s) 282, 386, 618, 868
Tru9I TTAA 4 cut(s) 282, 386, 618, 868
TscAI CASTG 1 cut(s) 536
TseFI GTSAC 2 cut(s) 268, 664
TseI GCWGC 3 cut(s) 365, 607, 681
Tsp45I GTSAC 2 cut(s) 268, 664
TspDTI ATGAA 6 cut(s) 24, 62, 126, 210, 753, 855
TspGWI ACGGA 2 cut(s) 216, 837
TspRI CASTG 1 cut(s) 536
Vha464I CTTAAG 1 cut(s) 617
XapI RAATTY 2 cut(s) 155, 463
ZraI GACGTC 1 cut(s) 91
ZrmI AGTACT 1 cut(s) 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.