MD04G1010000.v1.1

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0000637
Physical Location & Seq
Reverse (-)
1122046 .. 1123972
1927 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1010000.v1.1.491

Sequence Viewer

Length: 876 bp
ATGGACTGCTTGGTGAAAGTATTTGAAAGAGTTGGAGTGGAGTCGCTGCTGTTGGATGTCCCTTTTGTGTGCAAGTCGTGGCACAAAGCAACCCTAAATCCTTCATGCTGGAAAAATCTTGTTTTCCCTGAATTTGAACCCGAACCTTTTGAGTTCGATCCATATCCCTTTTACGATAGATTTCTTACTGAATATCGGGTCGGTGAGGATCGCTTCTCTGTCACTGATTTTATAAAGCTTGTAGTCAATCGTAGCCGCGGAAGTGCTGTTTCTGTCAAGCTACCTGGTTGCTGCACAGATGAAGCGTTTGAGCATGTTGCTAATGTGTGTCCTGACATTGTGATTCTGGGTTTACCCAGATTTCTGCTGTATGGTAGCATAAATGTAGAATTAATTGGAAAGTTCAAATGGTTGGCGATACTGTCTTTGGGCTGCTGCCACAAATTGGAGAATATACTTGCCGTGGTTAGCGTCCGCTGCAAGTTTCTTCTTCATTTAATCTTGTCGAATGCAAACGTTGGAAAAGATGAGGCAACGGCGATTGTCAACTTGGTGCCTAATATCAAGCGGCTTACCCTGCATCGGGCAAACATTGATAGGGACAGTCTCGTCGTTTTACTGCAGGGCTGCAAAGATCTTGATTATTTGGATGCCAGTGATTGTATTGGGTTTAATGAGGACGATGAGGAGATATCTCAGCTAGCTTCCAACATTAAGATGTTTATGTGCGAGGGATCAAAAGAGCGCTCTGAAATTTCTGTTGCTATGGAAGCTATGATGTCGGAAATGCAGAACTTTGATTTCTCTCAATTCTCTACAATGTTTGCTGAGGTTGATGGTGATGAAGAAGAGGTTGACGAGGAGGTTAATGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

292

Amino Acids

32.97

Weight (kDa)

4.58

Isoelectric Point (pI)

48.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000637)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13771 FvH4_4g13861 FvH4_4g13862 FvH4_4g13890 FvH4_4g13890 FvH4_4g13890 FvH4_4g13901
malus_domestica MD04G1010000.v1.1
prunus_persica Prupe.1G009600_v2.0.a1 Prupe.1G010100_v2.0.a1 Prupe.1G012400_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G157400_v2.0.a1 Prupe.1G157500_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.2G138900_v2.0.a1 Prupe.6G053000_v2.0.a1
pyrus_communis pycom04g00810
rosa_chinensis RchiOBHm_Chr4g0414621 RchiOBHm_Chr4g0414631 RchiOBHm_Chr4g0414641 RchiOBHm_Chr4g0415011 RchiOBHm_Chr4g0415031
rosa_laevigata RLG00000008101 RLG00000008104 RLG00000008138 RLG00000008139 RLG00000008140 RLG00000008354
rosa_multiflora Rmu_co8247483.1_g000001 Rmu_sc0003611.1_g000009 Rmu_sc0003611.1_g000014 Rmu_sc0007034.1_g000033 Rmu_sc0007391.1_g000006 Rmu_sc0011778.1_g000017 Rmu_sc0016172.1_g000002
rosa_roxburghii Rroxscaffold_5G00358400 Rroxscaffold_5G00358430 Rroxscaffold_5G00358610 Rroxscaffold_5G00358740 Rroxscaffold_5G00358750 Rroxscaffold_5G00358770
rosa_rugosa Rorug04G0108700 Rorug04G0128400 Rorug04G0128500 Rorug04G0128900 Rorug04G0129000 Rorug04G0129100 Rorug04G0131400 Rorug04G0131500 Rorug04G0131600 Rorug04G0131800 Rorug04G0131900
rosa_samantha Rh4AG187100 Rh4AG187200 Rh4AG190700 Rh4AG191200 Rh4BG185800 Rh4BG186100 Rh4BG188700 Rh4BG188900 Rh4BG189300 Rh4CG199200 Rh4CG199700 Rh4CG201900 Rh4CG202100 Rh4DG185400 Rh4DG185700 Rh4DG189300 Rh4DG189700 Rh6CG237600
rosa_wichuraiana Rw4G015970 Rw4G016000 Rw4G016240 Rw4G016260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 233
AasI GACNNNNNNGTC 1 cut(s) 608
AccB1I GGYRCC 1 cut(s) 553
AccB7I CCANNNNNTGG 1 cut(s) 445
AccII CGCG 1 cut(s) 258
AciI CCGC 4 cut(s) 256, 258, 475, 568
AclI AACGTT 1 cut(s) 516
AclWI GGATC 3 cut(s) 152, 216, 742
AcsI RAATTY 2 cut(s) 131, 753
AfeI AGCGCT 1 cut(s) 746
AfiI CCNNNNNNNGG 3 cut(s) 445, 582, 583
AgsI TTSAA 3 cut(s) 26, 137, 406
AjnI CCWGG 1 cut(s) 283
AluBI AGCT 5 cut(s) 238, 280, 700, 704, 773
AluI AGCT 5 cut(s) 238, 280, 700, 704, 773
Alw26I GTCTC 1 cut(s) 611
AlwI GGATC 3 cut(s) 152, 216, 742
Aor51HI AGCGCT 1 cut(s) 746
ApeKI GCWGC 6 cut(s) 46, 291, 432, 435, 477, 627
ApoI RAATTY 2 cut(s) 131, 753
AseI ATTAAT 1 cut(s) 392
AspLEI GCGC 1 cut(s) 747
AsuHPI GGTGA 3 cut(s) 25, 215, 851
AsuNHI GCTAGC 1 cut(s) 700
BanI GGYRCC 1 cut(s) 553
BbvCI CCTCAGC 1 cut(s) 828
BbvI GCAGC 6 cut(s) 33, 278, 419, 422, 464, 614
BccI CCATC 1 cut(s) 830
BceAI ACGGC 2 cut(s) 446, 552
BciT130I CCWGG 1 cut(s) 285
BcoDI GTCTC 1 cut(s) 611
BfaI CTAG 1 cut(s) 701
BfmI CTRYAG 1 cut(s) 620
BfoI RGCGCY 1 cut(s) 748
BglII AGATCT 1 cut(s) 634
BisI GCNGC 8 cut(s) 47, 256, 292, 433, 436, 478, 569, 628
BlsI GCNGC 8 cut(s) 48, 257, 293, 434, 437, 479, 570, 629
Bme1390I CCNGG 1 cut(s) 285
BmiI GGNNCC 1 cut(s) 555
BmrFI CCNGG 1 cut(s) 285
BmsI GCATC 2 cut(s) 589, 640
BmtI GCTAGC 1 cut(s) 704
Bpu10I CCTNAGC 1 cut(s) 828
BsaBI GATNNNNATC 1 cut(s) 162
BsaJI CCNNGG 2 cut(s) 256, 462
Bsc4I CCNNNNNNNGG 3 cut(s) 445, 582, 583
Bse1I ACTGG 1 cut(s) 654
Bse8I GATNNNNATC 1 cut(s) 162
BseBI CCWGG 1 cut(s) 285
BseDI CCNNGG 2 cut(s) 256, 462
BseGI GGATG 2 cut(s) 61, 655
BseJI GATNNNNATC 1 cut(s) 162
BseLI CCNNNNNNNGG 3 cut(s) 445, 582, 583
BseMII CTCAG 2 cut(s) 710, 819
BseNI ACTGG 1 cut(s) 654
BseRI GAGGAG 2 cut(s) 701, 875
BseXI GCAGC 6 cut(s) 33, 278, 419, 422, 464, 614
BsgI GTGCAG 1 cut(s) 277
Bsh1236I CGCG 1 cut(s) 258
BshNI GGYRCC 1 cut(s) 553
BslFI GGGAC 2 cut(s) 44, 614
BslI CCNNNNNNNGG 3 cut(s) 445, 582, 583
BsmAI GTCTC 1 cut(s) 611
BsmFI GGGAC 2 cut(s) 44, 614
BsmI GAATGC 1 cut(s) 514
Bsp143I GATC 4 cut(s) 157, 208, 634, 734
BspACI CCGC 4 cut(s) 256, 258, 475, 568
BspCNI CTCAG 2 cut(s) 709, 820
BspFNI CGCG 1 cut(s) 258
BspLI GGNNCC 1 cut(s) 555
BspMAI CTGCAG 1 cut(s) 624
BspOI GCTAGC 1 cut(s) 704
BspPI GGATC 3 cut(s) 152, 216, 742
BspT107I GGYRCC 1 cut(s) 553
BsrI ACTGG 1 cut(s) 654
BssECI CCNNGG 2 cut(s) 256, 462
BssMI GATC 4 cut(s) 157, 208, 634, 734
Bst2UI CCWGG 1 cut(s) 285
Bst4CI ACNGT 2 cut(s) 423, 605
Bst6I CTCTTC 1 cut(s) 843
BstC8I GCNNGC 1 cut(s) 702
BstDEI CTNAG 2 cut(s) 696, 828
BstDSI CCRYGG 2 cut(s) 256, 462
BstF5I GGATG 2 cut(s) 61, 655
BstFNI CGCG 1 cut(s) 258
BstH2I RGCGCY 1 cut(s) 748
BstHHI GCGC 1 cut(s) 747
BstKTI GATC 4 cut(s) 160, 211, 637, 737
BstMAI GTCTC 1 cut(s) 611
BstMBI GATC 4 cut(s) 157, 208, 634, 734
BstMWI GCNNNNNNNGC 3 cut(s) 477, 577, 770
BstNI CCWGG 1 cut(s) 285
BstNSI RCATGY 1 cut(s) 317
BstSCI CCNGG 1 cut(s) 283
BstSFI CTRYAG 1 cut(s) 620
BstUI CGCG 1 cut(s) 258
BstV1I GCAGC 6 cut(s) 33, 278, 419, 422, 464, 614
BstX2I RGATCY 1 cut(s) 634
BstYI RGATCY 1 cut(s) 634
BtgI CCRYGG 2 cut(s) 256, 462
BtsCI GGATG 2 cut(s) 61, 655
BtsIMutI CAGTG 2 cut(s) 222, 661
Cac8I GCNNGC 1 cut(s) 702
CfoI GCGC 1 cut(s) 747
Cfr42I CCGCGG 1 cut(s) 259
CseI GACGC 1 cut(s) 460
CsiI ACCWGGT 1 cut(s) 283
CviAII CATG 2 cut(s) 105, 314
CviJI RGCY 9 cut(s) 238, 255, 280, 432, 571, 627, 700, 704, 773
CviKI_1 RGCY 9 cut(s) 238, 255, 280, 432, 571, 627, 700, 704, 773
DdeI CTNAG 2 cut(s) 696, 828
DpnI GATC 4 cut(s) 159, 210, 636, 736
DpnII GATC 4 cut(s) 157, 208, 634, 734
DrdI GACNNNNNNGTC 1 cut(s) 608
DseDI GACNNNNNNGTC 1 cut(s) 608
Eam1104I CTCTTC 1 cut(s) 843
EarI CTCTTC 1 cut(s) 843
Eco32I GATATC 1 cut(s) 693
Eco47III AGCGCT 1 cut(s) 746
EcoRII CCWGG 1 cut(s) 283
EcoRV GATATC 1 cut(s) 693
FaeI CATG 2 cut(s) 108, 317
FaqI GGGAC 2 cut(s) 44, 614
FatI CATG 2 cut(s) 104, 313
Fnu4HI GCNGC 8 cut(s) 47, 256, 292, 433, 436, 478, 569, 628
FokI GGATG 2 cut(s) 68, 662
Fsp4HI GCNGC 8 cut(s) 47, 256, 292, 433, 436, 478, 569, 628
FspBI CTAG 1 cut(s) 701
GlaI GCGC 1 cut(s) 746
GluI GCNGC 8 cut(s) 47, 256, 292, 433, 436, 478, 569, 628
HaeII RGCGCY 1 cut(s) 748
HgaI GACGC 1 cut(s) 460
HhaI GCGC 1 cut(s) 747
Hin1II CATG 2 cut(s) 108, 317
Hin6I GCGC 1 cut(s) 745
HinP1I GCGC 1 cut(s) 745
HincII GTYRAC 2 cut(s) 547, 856
HindII GTYRAC 2 cut(s) 547, 856
HindIII AAGCTT 1 cut(s) 236
HinfI GANTC 2 cut(s) 41, 343
HphI GGTGA 3 cut(s) 25, 215, 851
Hpy166II GTNNAC 3 cut(s) 353, 547, 856
Hpy188I TCNGA 2 cut(s) 751, 784
Hpy188III TCNNGA 2 cut(s) 332, 638
Hpy8I GTNNAC 3 cut(s) 353, 547, 856
Hpy99I CGWCG 1 cut(s) 614
HpyAV CCTTC 1 cut(s) 111
HpyCH4III ACNGT 2 cut(s) 423, 605
HpyCH4IV ACGT 1 cut(s) 516
HpyCH4V TGCA 8 cut(s) 72, 294, 480, 512, 580, 622, 630, 790
HpyF10VI GCNNNNNNNGC 3 cut(s) 477, 577, 770
HpyF3I CTNAG 2 cut(s) 696, 828
HpySE526I ACGT 1 cut(s) 516
Hsp92II CATG 2 cut(s) 108, 317
HspAI GCGC 1 cut(s) 745
KspI CCGCGG 1 cut(s) 259
Kzo9I GATC 4 cut(s) 157, 208, 634, 734
Lsp1109I GCAGC 6 cut(s) 33, 278, 419, 422, 464, 614
LweI GCATC 2 cut(s) 589, 640
MabI ACCWGGT 1 cut(s) 283
MaeI CTAG 1 cut(s) 701
MaeII ACGT 1 cut(s) 516
MaeIII GTNAC 1 cut(s) 220
MalI GATC 4 cut(s) 159, 210, 636, 736
MboI GATC 4 cut(s) 157, 208, 634, 734
MboII GAAGA 4 cut(s) 479, 482, 857, 860
MflI RGATCY 1 cut(s) 634
MluCI AATT 6 cut(s) 131, 389, 393, 443, 753, 809
MlyI GAGTC 1 cut(s) 50
MmeI TCCRAC 5 cut(s) 13, 33, 499, 732, 762
MnlI CCTC 9 cut(s) 199, 523, 670, 679, 724, 823, 844, 853, 856
MseI TTAA 5 cut(s) 392, 497, 672, 714, 867
MslI CAYNNNNRTG 1 cut(s) 716
MspA1I CMGCKG 2 cut(s) 258, 477
MspR9I CCNGG 1 cut(s) 285
Mva1269I GAATGC 1 cut(s) 514
MvaI CCWGG 1 cut(s) 285
MvnI CGCG 1 cut(s) 258
MwoI GCNNNNNNNGC 3 cut(s) 477, 577, 770
NdeII GATC 4 cut(s) 157, 208, 634, 734
NheI GCTAGC 1 cut(s) 700
NlaIII CATG 2 cut(s) 108, 317
NlaIV GGNNCC 1 cut(s) 555
NmuCI GTSAC 1 cut(s) 220
NspI RCATGY 1 cut(s) 317
PctI GAATGC 1 cut(s) 514
PfeI GAWTC 1 cut(s) 343
PflMI CCANNNNNTGG 1 cut(s) 445
PkrI GCNGC 8 cut(s) 48, 257, 293, 434, 437, 479, 570, 629
PleI GAGTC 1 cut(s) 49
PpsI GAGTC 1 cut(s) 49
PshBI ATTAAT 1 cut(s) 392
PsiI TTATAA 1 cut(s) 233
Psp1406I AACGTT 1 cut(s) 516
Psp6I CCWGG 1 cut(s) 283
PspGI CCWGG 1 cut(s) 283
PspN4I GGNNCC 1 cut(s) 555
PstI CTGCAG 1 cut(s) 624
PsuI RGATCY 1 cut(s) 634
RseI CAYNNNNRTG 1 cut(s) 716
SacII CCGCGG 1 cut(s) 259
SaqAI TTAA 5 cut(s) 392, 497, 672, 714, 867
SatI GCNGC 8 cut(s) 47, 256, 292, 433, 436, 478, 569, 628
Sau3AI GATC 4 cut(s) 157, 208, 634, 734
SchI GAGTC 1 cut(s) 50
ScrFI CCNGG 1 cut(s) 285
SexAI ACCWGGT 1 cut(s) 283
SfaNI GCATC 2 cut(s) 589, 640
SfcI CTRYAG 1 cut(s) 620
Sfr303I CCGCGG 1 cut(s) 259
SgrBI CCGCGG 1 cut(s) 259
SmiMI CAYNNNNRTG 1 cut(s) 716
Sse9I AATT 6 cut(s) 131, 389, 393, 443, 753, 809
SsiI CCGC 4 cut(s) 256, 258, 475, 568
SspMI CTAG 1 cut(s) 701
StyD4I CCNGG 1 cut(s) 283
TaaI ACNGT 2 cut(s) 423, 605
TaiI ACGT 1 cut(s) 519
TaqI TCGA 2 cut(s) 156, 506
TasI AATT 6 cut(s) 131, 389, 393, 443, 753, 809
TauI GCSGC 2 cut(s) 258, 571
TfiI GAWTC 1 cut(s) 343
Tru1I TTAA 5 cut(s) 392, 497, 672, 714, 867
Tru9I TTAA 5 cut(s) 392, 497, 672, 714, 867
TscAI CASTG 2 cut(s) 229, 661
TseFI GTSAC 1 cut(s) 220
TseI GCWGC 6 cut(s) 46, 291, 432, 435, 477, 627
Tsp45I GTSAC 1 cut(s) 220
TspDTI ATGAA 4 cut(s) 93, 315, 482, 858
TspRI CASTG 2 cut(s) 229, 661
Van91I CCANNNNNTGG 1 cut(s) 445
VspI ATTAAT 1 cut(s) 392
XapI RAATTY 2 cut(s) 131, 753
XceI RCATGY 1 cut(s) 317
XspI CTAG 1 cut(s) 701
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.