Rorug04G0131400

F-box LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
21064673 .. 21065064
392 bp
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UTR
Exon/CDS
Intron
Rorug04G0131400.1

Sequence Viewer

Length: 231 bp
ATGAAGCCTTTGGATCTCTTCGCCGAGGTACTGCTCTGTTTCTTAACCGACCTGGATCTCTTCGTCGGAAACCTTCCCTTCACTGTTGTGATTGAGTTTCTGGTATGCGTTCCTCTGCTTCAGCGCCTACCCAGCTCCTCGCTCAAGAAAATCGCCCAGCTCGTAATTCCAAAGCACTACGATGAAGGAGAGTATGTTGTTCGTGAAGGTGAGGATGGGATTGGGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

76

Amino Acids

8.5

Weight (kDa)

4.53

Isoelectric Point (pI)

39.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000637)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13771 FvH4_4g13861 FvH4_4g13862 FvH4_4g13890 FvH4_4g13890 FvH4_4g13890 FvH4_4g13901
malus_domestica MD04G1010000.v1.1
prunus_persica Prupe.1G009600_v2.0.a1 Prupe.1G010100_v2.0.a1 Prupe.1G012400_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G157400_v2.0.a1 Prupe.1G157500_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.2G138900_v2.0.a1 Prupe.6G053000_v2.0.a1
pyrus_communis pycom04g00810
rosa_chinensis RchiOBHm_Chr4g0414621 RchiOBHm_Chr4g0414631 RchiOBHm_Chr4g0414641 RchiOBHm_Chr4g0415011 RchiOBHm_Chr4g0415031
rosa_laevigata RLG00000008101 RLG00000008104 RLG00000008138 RLG00000008139 RLG00000008140 RLG00000008354
rosa_multiflora Rmu_co8247483.1_g000001 Rmu_sc0003611.1_g000009 Rmu_sc0003611.1_g000014 Rmu_sc0007034.1_g000033 Rmu_sc0007391.1_g000006 Rmu_sc0011778.1_g000017 Rmu_sc0016172.1_g000002
rosa_roxburghii Rroxscaffold_5G00358400 Rroxscaffold_5G00358430 Rroxscaffold_5G00358610 Rroxscaffold_5G00358740 Rroxscaffold_5G00358750 Rroxscaffold_5G00358770
rosa_rugosa Rorug04G0108700 Rorug04G0128400 Rorug04G0128500 Rorug04G0128900 Rorug04G0129000 Rorug04G0129100 Rorug04G0131400 Rorug04G0131500 Rorug04G0131600 Rorug04G0131800 Rorug04G0131900
rosa_samantha Rh4AG187100 Rh4AG187200 Rh4AG190700 Rh4AG191200 Rh4BG185800 Rh4BG186100 Rh4BG188700 Rh4BG188900 Rh4BG189300 Rh4CG199200 Rh4CG199700 Rh4CG201900 Rh4CG202100 Rh4DG185400 Rh4DG185700 Rh4DG189300 Rh4DG189700 Rh6CG237600
rosa_wichuraiana Rw4G015970 Rw4G016000 Rw4G016240 Rw4G016260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 21, 63
AcuI CTGAAG 1 cut(s) 104
AfaI GTAC 1 cut(s) 30
AjnI CCWGG 1 cut(s) 51
AleI CACNNNNGTG 1 cut(s) 86
AluBI AGCT 2 cut(s) 135, 160
AluI AGCT 2 cut(s) 135, 160
AlwI GGATC 2 cut(s) 21, 63
AspLEI GCGC 1 cut(s) 126
AsuHPI GGTGA 1 cut(s) 221
BccI CCATC 1 cut(s) 209
BciT130I CCWGG 1 cut(s) 53
BfoI RGCGCY 1 cut(s) 127
Bme1390I CCNGG 1 cut(s) 53
BmrFI CCNGG 1 cut(s) 53
BpuEI CTTGAG 1 cut(s) 128
BsaJI CCNNGG 1 cut(s) 24
BsaXI ACNNNNNCTCC 2 cut(s) 180, 210
BseBI CCWGG 1 cut(s) 53
BseDI CCNNGG 1 cut(s) 24
BseGI GGATG 1 cut(s) 220
BseRI GAGGAG 1 cut(s) 127
BseYI CCCAGC 2 cut(s) 131, 156
Bsp143I GATC 2 cut(s) 13, 55
BspPI GGATC 2 cut(s) 21, 63
BssECI CCNNGG 1 cut(s) 24
BssMI GATC 2 cut(s) 13, 55
Bst2UI CCWGG 1 cut(s) 53
Bst4CI ACNGT 1 cut(s) 85
Bst6I CTCTTC 2 cut(s) 23, 65
BstF5I GGATG 1 cut(s) 220
BstH2I RGCGCY 1 cut(s) 127
BstHHI GCGC 1 cut(s) 126
BstKTI GATC 2 cut(s) 16, 58
BstMBI GATC 2 cut(s) 13, 55
BstMWI GCNNNNNNNGC 1 cut(s) 132
BstNI CCWGG 1 cut(s) 53
BstSCI CCNGG 1 cut(s) 51
BstX2I RGATCY 2 cut(s) 13, 55
BstYI RGATCY 2 cut(s) 13, 55
BtsCI GGATG 1 cut(s) 220
BtsIMutI CAGTG 1 cut(s) 81
CfoI GCGC 1 cut(s) 126
Csp6I GTAC 1 cut(s) 29
CviJI RGCY 3 cut(s) 7, 135, 160
CviKI_1 RGCY 3 cut(s) 7, 135, 160
CviQI GTAC 1 cut(s) 29
DpnI GATC 2 cut(s) 15, 57
DpnII GATC 2 cut(s) 13, 55
Eam1104I CTCTTC 2 cut(s) 23, 65
EarI CTCTTC 2 cut(s) 23, 65
Eco57I CTGAAG 1 cut(s) 104
EcoRII CCWGG 1 cut(s) 51
FaiI YATR 2 cut(s) 106, 195
FokI GGATG 1 cut(s) 227
GlaI GCGC 1 cut(s) 125
GsaI CCCAGC 2 cut(s) 135, 160
HaeII RGCGCY 1 cut(s) 127
HhaI GCGC 1 cut(s) 126
Hin6I GCGC 1 cut(s) 124
HinP1I GCGC 1 cut(s) 124
HphI GGTGA 1 cut(s) 221
Hpy188I TCNGA 1 cut(s) 68
Hpy188III TCNNGA 2 cut(s) 145, 203
Hpy99I CGWCG 1 cut(s) 68
HpyAV CCTTC 4 cut(s) 83, 88, 179, 200
HpyCH4III ACNGT 1 cut(s) 85
HpyF10VI GCNNNNNNNGC 1 cut(s) 132
HspAI GCGC 1 cut(s) 124
Kzo9I GATC 2 cut(s) 13, 55
LmnI GCTCC 1 cut(s) 140
LpnPI CCDG 5 cut(s) 38, 65, 86, 145, 170
MalI GATC 2 cut(s) 15, 57
MboI GATC 2 cut(s) 13, 55
MboII GAAGA 2 cut(s) 10, 52
MflI RGATCY 2 cut(s) 13, 55
MluCI AATT 1 cut(s) 165
MmeI TCCRAC 1 cut(s) 46
MnlI CCTC 4 cut(s) 19, 123, 148, 205
MseI TTAA 1 cut(s) 44
MslI CAYNNNNRTG 2 cut(s) 86, 180
MspR9I CCNGG 1 cut(s) 53
MvaI CCWGG 1 cut(s) 53
MwoI GCNNNNNNNGC 1 cut(s) 132
NdeII GATC 2 cut(s) 13, 55
NmeAIII GCCGAG 1 cut(s) 49
OliI CACNNNNGTG 1 cut(s) 86
PcsI WCGNNNNNNNCGW 1 cut(s) 159
Psp6I CCWGG 1 cut(s) 51
PspFI CCCAGC 2 cut(s) 131, 156
PspGI CCWGG 1 cut(s) 51
PsuI RGATCY 2 cut(s) 13, 55
RsaI GTAC 1 cut(s) 30
RsaNI GTAC 1 cut(s) 29
RseI CAYNNNNRTG 2 cut(s) 86, 180
SaqAI TTAA 1 cut(s) 44
Sau3AI GATC 2 cut(s) 13, 55
ScrFI CCNGG 1 cut(s) 53
SetI ASST 6 cut(s) 30, 54, 75, 137, 162, 211
SmiMI CAYNNNNRTG 2 cut(s) 86, 180
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
Sse9I AATT 1 cut(s) 165
StyD4I CCNGG 1 cut(s) 51
TaaI ACNGT 1 cut(s) 85
TasI AATT 1 cut(s) 165
Tru1I TTAA 1 cut(s) 44
Tru9I TTAA 1 cut(s) 44
TscAI CASTG 1 cut(s) 88
TspDTI ATGAA 2 cut(s) 17, 198
TspRI CASTG 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.