Rorug04G0129100

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000637
Physical Location & Seq
Reverse (-)
20585182 .. 20585691
510 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0129100.1

Sequence Viewer

Length: 342 bp
ATGGCCGCCTGCCTTATGTCGACATCTATGGCCACACCAGGAATTGCTACTTTCTACACGAGCTATGTTCCATCAGCATGCTATGGTAGTACCCAACAAGGTGTGATGATTGCATCAGCAGGTGACGCCATATGGAACAATGGTGCAGCATGTGGGAAATTTGTCACCGTTAGATGCACAGGTCCTCGGAATCCGGTACCGCATCCTTGCACCGGTGAAAGCGTGAGAGTAAAAATTGTAGATCATTGTCCCGGATGCCAATCTACTCTCGACCTTTCTAAAGAGTCTTTCACCAAAATCGCTAACCCTGTTGCGGGAATAATTAATATTGATTATTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

113

Amino Acids

11.86

Weight (kDa)

7.55

Isoelectric Point (pI)

49.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DPBB_1 PF03330 41 - 112 1.2e-16 Lytic transglycolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000637)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13771 FvH4_4g13861 FvH4_4g13862 FvH4_4g13890 FvH4_4g13890 FvH4_4g13890 FvH4_4g13901
malus_domestica MD04G1010000.v1.1
prunus_persica Prupe.1G009600_v2.0.a1 Prupe.1G010100_v2.0.a1 Prupe.1G012400_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G157400_v2.0.a1 Prupe.1G157500_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.2G138900_v2.0.a1 Prupe.6G053000_v2.0.a1
pyrus_communis pycom04g00810
rosa_chinensis RchiOBHm_Chr4g0414621 RchiOBHm_Chr4g0414631 RchiOBHm_Chr4g0414641 RchiOBHm_Chr4g0415011 RchiOBHm_Chr4g0415031
rosa_laevigata RLG00000008101 RLG00000008104 RLG00000008138 RLG00000008139 RLG00000008140 RLG00000008354
rosa_multiflora Rmu_co8247483.1_g000001 Rmu_sc0003611.1_g000009 Rmu_sc0003611.1_g000014 Rmu_sc0007034.1_g000033 Rmu_sc0007391.1_g000006 Rmu_sc0011778.1_g000017 Rmu_sc0016172.1_g000002
rosa_roxburghii Rroxscaffold_5G00358400 Rroxscaffold_5G00358430 Rroxscaffold_5G00358610 Rroxscaffold_5G00358740 Rroxscaffold_5G00358750 Rroxscaffold_5G00358770
rosa_rugosa Rorug04G0108700 Rorug04G0128400 Rorug04G0128500 Rorug04G0128900 Rorug04G0129000 Rorug04G0129100 Rorug04G0131400 Rorug04G0131500 Rorug04G0131600 Rorug04G0131800 Rorug04G0131900
rosa_samantha Rh4AG187100 Rh4AG187200 Rh4AG190700 Rh4AG191200 Rh4BG185800 Rh4BG186100 Rh4BG188700 Rh4BG188900 Rh4BG189300 Rh4CG199200 Rh4CG199700 Rh4CG201900 Rh4CG202100 Rh4DG185400 Rh4DG185700 Rh4DG189300 Rh4DG189700 Rh6CG237600
rosa_wichuraiana Rw4G015970 Rw4G016000 Rw4G016240 Rw4G016260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 110
Acc36I ACCTGC 1 cut(s) 110
Acc65I GGTACC 1 cut(s) 196
AccB1I GGYRCC 1 cut(s) 196
AccI GTMKAC 1 cut(s) 20
AciI CCGC 3 cut(s) 6, 200, 314
AcoI YGGCCR 2 cut(s) 3, 30
AcsI RAATTY 1 cut(s) 158
AcyI GRCGYC 1 cut(s) 126
AfaI GTAC 2 cut(s) 91, 198
AfiI CCNNNNNNNGG 3 cut(s) 212, 313, 314
AgeI ACCGGT 1 cut(s) 212
AjnI CCWGG 1 cut(s) 37
AluBI AGCT 1 cut(s) 63
AluI AGCT 1 cut(s) 63
AoxI GGCC 2 cut(s) 3, 30
ApeKI GCWGC 1 cut(s) 146
ApoI RAATTY 1 cut(s) 158
AseI ATTAAT 1 cut(s) 324
AsiGI ACCGGT 1 cut(s) 212
Asp718I GGTACC 1 cut(s) 196
AspS9I GGNCC 1 cut(s) 182
AsuC2I CCSGG 1 cut(s) 252
AsuHPI GGTGA 4 cut(s) 134, 157, 227, 283
AvaII GGWCC 1 cut(s) 182
BalI TGGCCA 1 cut(s) 32
BanI GGYRCC 1 cut(s) 196
BauI CACGAG 1 cut(s) 58
BbvI GCAGC 1 cut(s) 158
BccI CCATC 1 cut(s) 79
BciT130I CCWGG 1 cut(s) 39
BcnI CCSGG 1 cut(s) 252
BfuAI ACCTGC 1 cut(s) 110
BisI GCNGC 2 cut(s) 6, 147
BlsI GCNGC 2 cut(s) 7, 148
Bme1390I CCNGG 2 cut(s) 39, 252
Bme18I GGWCC 1 cut(s) 182
BmgT120I GGNCC 1 cut(s) 182
BmiI GGNNCC 1 cut(s) 198
BmrFI CCNGG 2 cut(s) 39, 252
BmsI GCATC 4 cut(s) 122, 164, 211, 245
BpuMI CCSGG 1 cut(s) 252
BsaBI GATNNNNATC 1 cut(s) 259
BsaHI GRCGYC 1 cut(s) 126
BsaJI CCNNGG 1 cut(s) 185
BsaWI WCCGGW 2 cut(s) 193, 212
Bsc4I CCNNNNNNNGG 3 cut(s) 212, 313, 314
Bse118I RCCGGY 1 cut(s) 212
Bse8I GATNNNNATC 1 cut(s) 259
BseBI CCWGG 1 cut(s) 39
BseDI CCNNGG 1 cut(s) 185
BseGI GGATG 2 cut(s) 202, 260
BseJI GATNNNNATC 1 cut(s) 259
BseLI CCNNNNNNNGG 3 cut(s) 212, 313, 314
BseXI GCAGC 1 cut(s) 158
BsgI GTGCAG 1 cut(s) 165
BshFI GGCC 2 cut(s) 5, 32
BshNI GGYRCC 1 cut(s) 196
BshTI ACCGGT 1 cut(s) 212
BsiSI CCGG 3 cut(s) 194, 213, 252
BslFI GGGAC 1 cut(s) 234
BslI CCNNNNNNNGG 3 cut(s) 212, 313, 314
BsmFI GGGAC 1 cut(s) 234
BsnI GGCC 2 cut(s) 5, 32
Bsp143I GATC 1 cut(s) 241
BspACI CCGC 3 cut(s) 6, 200, 314
BspANI GGCC 2 cut(s) 5, 32
BspLI GGNNCC 1 cut(s) 198
BspMI ACCTGC 1 cut(s) 110
BspT107I GGYRCC 1 cut(s) 196
BsrFI RCCGGY 1 cut(s) 212
BssAI RCCGGY 1 cut(s) 212
BssECI CCNNGG 1 cut(s) 185
BssMI GATC 1 cut(s) 241
BssNI GRCGYC 1 cut(s) 126
BssSI CACGAG 1 cut(s) 58
Bst2BI CACGAG 1 cut(s) 58
Bst2UI CCWGG 1 cut(s) 39
Bst4CI ACNGT 1 cut(s) 169
BstACI GRCGYC 1 cut(s) 126
BstC8I GCNNGC 2 cut(s) 10, 79
BstF5I GGATG 2 cut(s) 202, 260
BstKTI GATC 1 cut(s) 244
BstMBI GATC 1 cut(s) 241
BstMWI GCNNNNNNNGC 1 cut(s) 125
BstNI CCWGG 1 cut(s) 39
BstNSI RCATGY 2 cut(s) 81, 153
BstSCI CCNGG 2 cut(s) 37, 250
BstV1I GCAGC 1 cut(s) 158
BsuRI GGCC 2 cut(s) 5, 32
BtsCI GGATG 2 cut(s) 202, 260
BveI ACCTGC 1 cut(s) 110
Cac8I GCNNGC 2 cut(s) 10, 79
Cfr10I RCCGGY 1 cut(s) 212
Cfr13I GGNCC 1 cut(s) 182
CseI GACGC 1 cut(s) 134
Csp6I GTAC 2 cut(s) 90, 197
CspAI ACCGGT 1 cut(s) 212
CviAII CATG 2 cut(s) 78, 150
CviJI RGCY 3 cut(s) 5, 32, 63
CviKI_1 RGCY 3 cut(s) 5, 32, 63
CviQI GTAC 2 cut(s) 90, 197
DpnI GATC 1 cut(s) 243
DpnII GATC 1 cut(s) 241
EaeI YGGCCR 2 cut(s) 3, 30
Eco47I GGWCC 1 cut(s) 182
EcoO109I RGGNCCY 1 cut(s) 182
EcoRII CCWGG 1 cut(s) 37
FaeI CATG 2 cut(s) 81, 153
FaiI YATR 8 cut(s) 17, 29, 66, 79, 84, 131, 133, 151
FaqI GGGAC 1 cut(s) 234
FatI CATG 2 cut(s) 77, 149
FauI CCCGC 1 cut(s) 307
FauNDI CATATG 1 cut(s) 131
FblI GTMKAC 1 cut(s) 20
Fnu4HI GCNGC 2 cut(s) 6, 147
FokI GGATG 2 cut(s) 189, 267
Fsp4HI GCNGC 2 cut(s) 6, 147
GluI GCNGC 2 cut(s) 6, 147
HaeIII GGCC 2 cut(s) 5, 32
HapII CCGG 3 cut(s) 194, 213, 252
HgaI GACGC 1 cut(s) 134
Hin1I GRCGYC 1 cut(s) 126
Hin1II CATG 2 cut(s) 81, 153
HincII GTYRAC 1 cut(s) 21
HindII GTYRAC 1 cut(s) 21
HinfI GANTC 2 cut(s) 190, 284
HpaII CCGG 3 cut(s) 194, 213, 252
HphI GGTGA 4 cut(s) 134, 157, 227, 283
Hpy166II GTNNAC 1 cut(s) 21
Hpy188I TCNGA 1 cut(s) 189
Hpy188III TCNNGA 1 cut(s) 269
Hpy8I GTNNAC 1 cut(s) 21
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4V TGCA 4 cut(s) 113, 146, 177, 210
HpyF10VI GCNNNNNNNGC 1 cut(s) 125
Hsp92I GRCGYC 1 cut(s) 126
Hsp92II CATG 2 cut(s) 81, 153
KpnI GGTACC 1 cut(s) 200
Kzo9I GATC 1 cut(s) 241
LpnPI CCDG 9 cut(s) 22, 24, 51, 105, 165, 207, 226, 265, 321
Lsp1109I GCAGC 1 cut(s) 158
LweI GCATC 4 cut(s) 122, 164, 211, 245
MaeIII GTNAC 2 cut(s) 122, 163
MalI GATC 1 cut(s) 243
MboI GATC 1 cut(s) 241
MlsI TGGCCA 1 cut(s) 32
MluCI AATT 4 cut(s) 42, 158, 234, 321
MluNI TGGCCA 1 cut(s) 32
MlyI GAGTC 1 cut(s) 293
MnlI CCTC 1 cut(s) 195
Mox20I TGGCCA 1 cut(s) 32
MscI TGGCCA 1 cut(s) 32
MseI TTAA 1 cut(s) 324
MslI CAYNNNNRTG 1 cut(s) 76
Msp20I TGGCCA 1 cut(s) 32
MspI CCGG 3 cut(s) 194, 213, 252
MspR9I CCNGG 2 cut(s) 39, 252
MvaI CCWGG 1 cut(s) 39
MwoI GCNNNNNNNGC 1 cut(s) 125
NciI CCSGG 1 cut(s) 252
NdeI CATATG 1 cut(s) 131
NdeII GATC 1 cut(s) 241
NlaIII CATG 2 cut(s) 81, 153
NlaIV GGNNCC 1 cut(s) 198
NmuCI GTSAC 2 cut(s) 122, 163
NspI RCATGY 2 cut(s) 81, 153
PaeI GCATGC 1 cut(s) 81
PaqCI CACCTGC 1 cut(s) 110
PfeI GAWTC 1 cut(s) 190
PfoI TCCNGGA 1 cut(s) 250
PinAI ACCGGT 1 cut(s) 212
PkrI GCNGC 2 cut(s) 7, 148
PleI GAGTC 1 cut(s) 292
PpsI GAGTC 1 cut(s) 292
PpuMI RGGWCCY 1 cut(s) 182
PshBI ATTAAT 1 cut(s) 324
Psp5II RGGWCCY 1 cut(s) 182
Psp6I CCWGG 1 cut(s) 37
PspGI CCWGG 1 cut(s) 37
PspN4I GGNNCC 1 cut(s) 198
PspPI GGNCC 1 cut(s) 182
PspPPI RGGWCCY 1 cut(s) 182
RsaI GTAC 2 cut(s) 91, 198
RsaNI GTAC 2 cut(s) 90, 197
RseI CAYNNNNRTG 1 cut(s) 76
SalI GTCGAC 1 cut(s) 19
SaqAI TTAA 1 cut(s) 324
SatI GCNGC 2 cut(s) 6, 147
Sau3AI GATC 1 cut(s) 241
Sau96I GGNCC 1 cut(s) 182
SchI GAGTC 1 cut(s) 293
ScrFI CCNGG 2 cut(s) 39, 252
SetI ASST 5 cut(s) 65, 103, 124, 184, 276
SfaNI GCATC 4 cut(s) 122, 164, 211, 245
SgrAI CRCCGGYG 1 cut(s) 212
SinI GGWCC 1 cut(s) 182
SmiMI CAYNNNNRTG 1 cut(s) 76
SphI GCATGC 1 cut(s) 81
Sse9I AATT 4 cut(s) 42, 158, 234, 321
SsiI CCGC 3 cut(s) 6, 200, 314
SspI AATATT 1 cut(s) 328
StyD4I CCNGG 2 cut(s) 37, 250
TaaI ACNGT 1 cut(s) 169
TaqI TCGA 2 cut(s) 20, 270
TasI AATT 4 cut(s) 42, 158, 234, 321
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 1 cut(s) 190
Tru1I TTAA 1 cut(s) 324
Tru9I TTAA 1 cut(s) 324
TseFI GTSAC 2 cut(s) 122, 163
TseI GCWGC 1 cut(s) 146
Tsp45I GTSAC 2 cut(s) 122, 163
VpaK11BI GGWCC 1 cut(s) 182
VspI ATTAAT 1 cut(s) 324
XapI RAATTY 1 cut(s) 158
XceI RCATGY 2 cut(s) 81, 153
XmiI GTMKAC 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.