Rh4CG199200

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000637
Physical Location & Seq
Reverse (-)
42388280 .. 42390020
1741 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG199200.1

Sequence Viewer

Length: 975 bp
ATGAATATGCTGGTAAAACTTTGTATATATATGATGATTTTCCAAGCACTGAAGCACAAAAACGGTTCCGGGGAAGATCACCAAGCACAAAATACTTGTTACGAGATGGAAGATGAACGAAGATGGGAGGAATTAGAGGTTGACTGTTTGATAAATGTATTTGGAAGAGTGGGAATGGAGTCATTGCTTTTGGATGTCCCTTTCGTATGCAAGTCATGGTACAGAGCAACCCTCAACCCTTCATGCTGGCAATATCTCAAATTTCCTGATCTTACTATTGATCTTGATTTTGACTTTGAAGACGGATATTGGTGTACCCTTATTCAAAGATTTGTAGATGAGTATCGACTTGATGAGAGCCGTTTCTCGGTGACTGCATTTGTTAAGTTCATAATCAGTCGTAGCAAAGGAAAGGCTCTTCATCTCACGCTATCCCCATGTGCTTCAGAAGATGTCTTGAAATATGCTGCAGATGAGTGTCCTGCCTTAAAGCTTCTTGAATTGCCCAGCGGTTTAGTGAATTCTGAGTCGAGCATTATTCAAGAAATAATTGGAAAGTGGACAAATTTGGAGTACTTGGTATTGGGAAGCAGCGATAATTTGGAAAACTTCCTTGGACAGATCTCCATTCATTGCAAGAACTTGTGTCTTTTGCGTGTGGCTGATGCAGACATTGGTAAAGATGAAGCAATGGCAATTGTTAGCTTGCTGCCTAAGCTTAAGCAATTAATCTTGAAGAATGCAAATATTGATCGGGACGATCTTGTGACGCTACTGCGGGGCTGCAACGAGCTTGTGCGTTTGGATGTCAGCAATTGTATAGGTTTTGATGAGGAAGATGAAGAAATAGCAAAGCTTGCTTCTCATATTGCTGATTTCAGCTCTCAGGGTTCCACACTAGATGATTATGATGATTACGATGGATATGAATTGAATTCCCATGATGCAATTTTTTATGGATACGGTTCCGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

324

Amino Acids

36.88

Weight (kDa)

4.47

Isoelectric Point (pI)

38.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000637)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13771 FvH4_4g13861 FvH4_4g13862 FvH4_4g13890 FvH4_4g13890 FvH4_4g13890 FvH4_4g13901
malus_domestica MD04G1010000.v1.1
prunus_persica Prupe.1G009600_v2.0.a1 Prupe.1G010100_v2.0.a1 Prupe.1G012400_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G157400_v2.0.a1 Prupe.1G157500_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.2G138900_v2.0.a1 Prupe.6G053000_v2.0.a1
pyrus_communis pycom04g00810
rosa_chinensis RchiOBHm_Chr4g0414621 RchiOBHm_Chr4g0414631 RchiOBHm_Chr4g0414641 RchiOBHm_Chr4g0415011 RchiOBHm_Chr4g0415031
rosa_laevigata RLG00000008101 RLG00000008104 RLG00000008138 RLG00000008139 RLG00000008140 RLG00000008354
rosa_multiflora Rmu_co8247483.1_g000001 Rmu_sc0003611.1_g000009 Rmu_sc0003611.1_g000014 Rmu_sc0007034.1_g000033 Rmu_sc0007391.1_g000006 Rmu_sc0011778.1_g000017 Rmu_sc0016172.1_g000002
rosa_roxburghii Rroxscaffold_5G00358400 Rroxscaffold_5G00358430 Rroxscaffold_5G00358610 Rroxscaffold_5G00358740 Rroxscaffold_5G00358750 Rroxscaffold_5G00358770
rosa_rugosa Rorug04G0108700 Rorug04G0128400 Rorug04G0128500 Rorug04G0128900 Rorug04G0129000 Rorug04G0129100 Rorug04G0131400 Rorug04G0131500 Rorug04G0131600 Rorug04G0131800 Rorug04G0131900
rosa_samantha Rh4AG187100 Rh4AG187200 Rh4AG190700 Rh4AG191200 Rh4BG185800 Rh4BG186100 Rh4BG188700 Rh4BG188900 Rh4BG189300 Rh4CG199200 Rh4CG199700 Rh4CG201900 Rh4CG202100 Rh4DG185400 Rh4DG185700 Rh4DG189300 Rh4DG189700 Rh6CG237600
rosa_wichuraiana Rw4G015970 Rw4G016000 Rw4G016240 Rw4G016260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 510, 778
AcsI RAATTY 4 cut(s) 260, 520, 565, 934
AcuI CTGAAG 2 cut(s) 71, 429
AfaI GTAC 3 cut(s) 221, 316, 575
AfiI CCNNNNNNNGG 1 cut(s) 367
AflII CTTAAG 1 cut(s) 719
AgsI TTSAA 7 cut(s) 299, 326, 460, 500, 542, 736, 934
AjuI GAANNNNNNNTTGG 2 cut(s) 597, 629
AluBI AGCT 6 cut(s) 493, 705, 718, 793, 856, 882
AluI AGCT 6 cut(s) 493, 705, 718, 793, 856, 882
ApeKI GCWGC 4 cut(s) 467, 591, 709, 783
ApoI RAATTY 4 cut(s) 260, 520, 565, 934
AseI ATTAAT 1 cut(s) 728
AsuC2I CCSGG 1 cut(s) 70
AsuHPI GGTGA 2 cut(s) 71, 382
BbsI GAAGAC 1 cut(s) 306
BbvI GCAGC 4 cut(s) 454, 603, 696, 770
BccI CCATC 3 cut(s) 100, 117, 914
BceAI ACGGC 1 cut(s) 345
BciVI GTATCC 1 cut(s) 953
BcnI CCSGG 1 cut(s) 70
BfaI CTAG 1 cut(s) 899
BfmI CTRYAG 1 cut(s) 468
BfrI CTTAAG 1 cut(s) 719
BfuI GTATCC 1 cut(s) 953
BglII AGATCT 1 cut(s) 621
BisI GCNGC 4 cut(s) 468, 592, 710, 784
BlsI GCNGC 4 cut(s) 469, 593, 711, 785
BmcAI AGTACT 1 cut(s) 575
Bme1390I CCNGG 1 cut(s) 70
BmiI GGNNCC 3 cut(s) 67, 892, 967
BmrFI CCNGG 1 cut(s) 70
BmsI GCATC 2 cut(s) 655, 934
BpiI GAAGAC 1 cut(s) 306
BplI GAGNNNNNCTC 2 cut(s) 216, 248
Bpu10I CCTNAGC 1 cut(s) 714
BpuMI CCSGG 1 cut(s) 70
BsaBI GATNNNNATC 1 cut(s) 342
BsaJI CCNNGG 2 cut(s) 69, 613
Bsc4I CCNNNNNNNGG 1 cut(s) 367
Bse3DI GCAATG 3 cut(s) 182, 631, 696
Bse8I GATNNNNATC 1 cut(s) 342
BseDI CCNNGG 2 cut(s) 69, 613
BseGI GGATG 2 cut(s) 199, 811
BseJI GATNNNNATC 1 cut(s) 342
BseLI CCNNNNNNNGG 1 cut(s) 367
BseMI GCAATG 3 cut(s) 182, 631, 696
BseMII CTCAG 2 cut(s) 516, 899
BseXI GCAGC 4 cut(s) 454, 603, 696, 770
BseYI CCCAGC 1 cut(s) 506
BsiSI CCGG 1 cut(s) 69
BslFI GGGAC 2 cut(s) 182, 770
BslI CCNNNNNNNGG 1 cut(s) 367
BsmFI GGGAC 2 cut(s) 182, 770
BsmI GAATGC 1 cut(s) 745
Bsp143I GATC 6 cut(s) 76, 268, 280, 621, 751, 760
BspACI CCGC 2 cut(s) 510, 778
BspCNI CTCAG 2 cut(s) 517, 898
BspLI GGNNCC 3 cut(s) 67, 892, 967
BspMAI CTGCAG 1 cut(s) 472
BspQI GCTCTTC 1 cut(s) 423
BspTI CTTAAG 1 cut(s) 719
BsrDI GCAATG 3 cut(s) 182, 631, 696
BssECI CCNNGG 2 cut(s) 69, 613
BssMI GATC 6 cut(s) 76, 268, 280, 621, 751, 760
BssT1I CCWWGG 1 cut(s) 613
Bst4CI ACNGT 3 cut(s) 65, 146, 965
Bst6I CTCTTC 2 cut(s) 160, 423
BstAFI CTTAAG 1 cut(s) 719
BstAPI GCANNNNNTGC 1 cut(s) 857
BstC8I GCNNGC 3 cut(s) 248, 707, 858
BstDEI CTNAG 3 cut(s) 525, 714, 885
BstF5I GGATG 2 cut(s) 199, 811
BstKTI GATC 6 cut(s) 79, 271, 283, 624, 754, 763
BstMBI GATC 6 cut(s) 76, 268, 280, 621, 751, 760
BstMWI GCNNNNNNNGC 2 cut(s) 715, 857
BstSCI CCNGG 1 cut(s) 68
BstSFI CTRYAG 1 cut(s) 468
BstV1I GCAGC 4 cut(s) 454, 603, 696, 770
BstV2I GAAGAC 1 cut(s) 306
BstX2I RGATCY 1 cut(s) 621
BstYI RGATCY 1 cut(s) 621
BsuI GTATCC 1 cut(s) 953
BtsCI GGATG 2 cut(s) 199, 811
BtsIMutI CAGTG 1 cut(s) 47
Cac8I GCNNGC 3 cut(s) 248, 707, 858
CseI GACGC 1 cut(s) 778
Csp6I GTAC 3 cut(s) 220, 315, 574
CviAII CATG 4 cut(s) 216, 243, 438, 941
CviQI GTAC 3 cut(s) 220, 315, 574
DdeI CTNAG 3 cut(s) 525, 714, 885
DpnI GATC 6 cut(s) 78, 270, 282, 623, 753, 762
DpnII GATC 6 cut(s) 76, 268, 280, 621, 751, 760
Eam1104I CTCTTC 2 cut(s) 160, 423
EarI CTCTTC 2 cut(s) 160, 423
Eco130I CCWWGG 1 cut(s) 613
Eco57I CTGAAG 2 cut(s) 71, 429
EcoRI GAATTC 2 cut(s) 520, 934
EcoT14I CCWWGG 1 cut(s) 613
ErhI CCWWGG 1 cut(s) 613
FaeI CATG 4 cut(s) 219, 246, 441, 944
FaqI GGGAC 2 cut(s) 182, 770
FatI CATG 4 cut(s) 215, 242, 437, 940
FauI CCCGC 1 cut(s) 771
Fnu4HI GCNGC 4 cut(s) 468, 592, 710, 784
FokI GGATG 2 cut(s) 206, 818
Fsp4HI GCNGC 4 cut(s) 468, 592, 710, 784
FspBI CTAG 1 cut(s) 899
GluI GCNGC 4 cut(s) 468, 592, 710, 784
GsaI CCCAGC 1 cut(s) 510
HapII CCGG 1 cut(s) 69
HgaI GACGC 1 cut(s) 778
Hin1II CATG 4 cut(s) 219, 246, 441, 944
HincII GTYRAC 1 cut(s) 142
HindII GTYRAC 1 cut(s) 142
HindIII AAGCTT 3 cut(s) 491, 716, 854
HinfI GANTC 2 cut(s) 179, 527
HpaII CCGG 1 cut(s) 69
HphI GGTGA 2 cut(s) 71, 382
Hpy166II GTNNAC 3 cut(s) 142, 315, 561
Hpy188I TCNGA 3 cut(s) 448, 526, 970
Hpy188III TCNNGA 7 cut(s) 266, 284, 457, 497, 542, 733, 755
Hpy8I GTNNAC 3 cut(s) 142, 315, 561
HpyAV CCTTC 1 cut(s) 249
HpyCH4III ACNGT 3 cut(s) 65, 146, 965
HpyCH4V TGCA 8 cut(s) 210, 377, 470, 636, 668, 743, 786, 947
HpyF10VI GCNNNNNNNGC 2 cut(s) 715, 857
HpyF3I CTNAG 3 cut(s) 525, 714, 885
Hsp92II CATG 4 cut(s) 219, 246, 441, 944
Kzo9I GATC 6 cut(s) 76, 268, 280, 621, 751, 760
LguI GCTCTTC 1 cut(s) 423
LpnPI CCDG 6 cut(s) 82, 232, 279, 495, 520, 872
Lsp1109I GCAGC 4 cut(s) 454, 603, 696, 770
LweI GCATC 2 cut(s) 655, 934
MaeI CTAG 1 cut(s) 899
MaeIII GTNAC 3 cut(s) 98, 370, 766
MalI GATC 6 cut(s) 78, 270, 282, 623, 753, 762
MboI GATC 6 cut(s) 76, 268, 280, 621, 751, 760
MfeI CAATTG 2 cut(s) 696, 814
MflI RGATCY 1 cut(s) 621
MlyI GAGTC 2 cut(s) 188, 536
MnlI CCTC 4 cut(s) 121, 130, 242, 826
MseI TTAA 4 cut(s) 384, 488, 720, 728
MspA1I CMGCKG 1 cut(s) 510
MspCI CTTAAG 1 cut(s) 719
MspI CCGG 1 cut(s) 69
MspR9I CCNGG 1 cut(s) 70
MunI CAATTG 2 cut(s) 696, 814
Mva1269I GAATGC 1 cut(s) 745
MwoI GCNNNNNNNGC 2 cut(s) 715, 857
NciI CCSGG 1 cut(s) 70
NdeII GATC 6 cut(s) 76, 268, 280, 621, 751, 760
NlaIII CATG 4 cut(s) 219, 246, 441, 944
NlaIV GGNNCC 3 cut(s) 67, 892, 967
NmuCI GTSAC 2 cut(s) 370, 766
PciSI GCTCTTC 1 cut(s) 423
PctI GAATGC 1 cut(s) 745
PkrI GCNGC 4 cut(s) 469, 593, 711, 785
PleI GAGTC 2 cut(s) 187, 535
PpsI GAGTC 2 cut(s) 187, 535
PshBI ATTAAT 1 cut(s) 728
PspFI CCCAGC 1 cut(s) 506
PspN4I GGNNCC 3 cut(s) 67, 892, 967
PstI CTGCAG 1 cut(s) 472
PsuI RGATCY 1 cut(s) 621
RsaI GTAC 3 cut(s) 221, 316, 575
RsaNI GTAC 3 cut(s) 220, 315, 574
SapI GCTCTTC 1 cut(s) 423
SaqAI TTAA 4 cut(s) 384, 488, 720, 728
SatI GCNGC 4 cut(s) 468, 592, 710, 784
Sau3AI GATC 6 cut(s) 76, 268, 280, 621, 751, 760
ScaI AGTACT 1 cut(s) 575
SchI GAGTC 2 cut(s) 188, 536
ScrFI CCNGG 1 cut(s) 70
SetI ASST 8 cut(s) 141, 495, 707, 720, 795, 826, 858, 884
SfaNI GCATC 2 cut(s) 655, 934
SfcI CTRYAG 1 cut(s) 468
SmlI CTYRAG 1 cut(s) 719
SmoI CTYRAG 1 cut(s) 719
SsiI CCGC 2 cut(s) 510, 778
SspI AATATT 1 cut(s) 748
SspMI CTAG 1 cut(s) 899
StyD4I CCNGG 1 cut(s) 68
StyI CCWWGG 1 cut(s) 613
TaaI ACNGT 3 cut(s) 65, 146, 965
TaqI TCGA 2 cut(s) 346, 530
TatI WGTACW 1 cut(s) 573
Tru1I TTAA 4 cut(s) 384, 488, 720, 728
Tru9I TTAA 4 cut(s) 384, 488, 720, 728
TscAI CASTG 1 cut(s) 54
TseFI GTSAC 2 cut(s) 370, 766
TseI GCWGC 4 cut(s) 467, 591, 709, 783
Tsp45I GTSAC 2 cut(s) 370, 766
TspDTI ATGAA 9 cut(s) 17, 129, 231, 379, 410, 620, 699, 855, 942
TspGWI ACGGA 1 cut(s) 318
TspRI CASTG 1 cut(s) 54
Vha464I CTTAAG 1 cut(s) 719
VspI ATTAAT 1 cut(s) 728
XapI RAATTY 4 cut(s) 260, 520, 565, 934
XspI CTAG 1 cut(s) 899
ZrmI AGTACT 1 cut(s) 575
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.