Rorug04G0129000

F-box LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
20562256 .. 20562784
529 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0129000.1

Sequence Viewer

Length: 300 bp
ATGCTTGATGCAGCAAGTGGGGGAGCATTCATGGACAAGACGCAATCTACTACTAAAGCATTGTTAAAAAACATAGCTGGAAATACTCGGCAATTTGGAGGGAGAGATGAGCTATCACTTAAGAGCGTCAAAGAGGGTGACTTGATCATCCGAATTTTACGTGGAGCAATAATGACAATGTTTTGCAACCTCATGGAAGCAATTACAATCACCCATCTGGATTTTATCAAGCAAGATCGCAAGCATCTTATCAACCTCCTCCTCAACAACAAGCTCCAAGTAAGTCTCTTAAGGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

99

Amino Acids

11.06

Weight (kDa)

9.8

Isoelectric Point (pI)

26.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000637)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13771 FvH4_4g13861 FvH4_4g13862 FvH4_4g13890 FvH4_4g13890 FvH4_4g13890 FvH4_4g13901
malus_domestica MD04G1010000.v1.1
prunus_persica Prupe.1G009600_v2.0.a1 Prupe.1G010100_v2.0.a1 Prupe.1G012400_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G157400_v2.0.a1 Prupe.1G157500_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.2G138900_v2.0.a1 Prupe.6G053000_v2.0.a1
pyrus_communis pycom04g00810
rosa_chinensis RchiOBHm_Chr4g0414621 RchiOBHm_Chr4g0414631 RchiOBHm_Chr4g0414641 RchiOBHm_Chr4g0415011 RchiOBHm_Chr4g0415031
rosa_laevigata RLG00000008101 RLG00000008104 RLG00000008138 RLG00000008139 RLG00000008140 RLG00000008354
rosa_multiflora Rmu_co8247483.1_g000001 Rmu_sc0003611.1_g000009 Rmu_sc0003611.1_g000014 Rmu_sc0007034.1_g000033 Rmu_sc0007391.1_g000006 Rmu_sc0011778.1_g000017 Rmu_sc0016172.1_g000002
rosa_roxburghii Rroxscaffold_5G00358400 Rroxscaffold_5G00358430 Rroxscaffold_5G00358610 Rroxscaffold_5G00358740 Rroxscaffold_5G00358750 Rroxscaffold_5G00358770
rosa_rugosa Rorug04G0108700 Rorug04G0128400 Rorug04G0128500 Rorug04G0128900 Rorug04G0129000 Rorug04G0129100 Rorug04G0131400 Rorug04G0131500 Rorug04G0131600 Rorug04G0131800 Rorug04G0131900
rosa_samantha Rh4AG187100 Rh4AG187200 Rh4AG190700 Rh4AG191200 Rh4BG185800 Rh4BG186100 Rh4BG188700 Rh4BG188900 Rh4BG189300 Rh4CG199200 Rh4CG199700 Rh4CG201900 Rh4CG202100 Rh4DG185400 Rh4DG185700 Rh4DG189300 Rh4DG189700 Rh6CG237600
rosa_wichuraiana Rw4G015970 Rw4G016000 Rw4G016240 Rw4G016260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 153
AflII CTTAAG 2 cut(s) 119, 289
AluBI AGCT 3 cut(s) 77, 112, 274
AluI AGCT 3 cut(s) 77, 112, 274
Alw26I GTCTC 1 cut(s) 290
ApeKI GCWGC 1 cut(s) 11
ApoI RAATTY 1 cut(s) 153
AsuHPI GGTGA 2 cut(s) 149, 202
BbvI GCAGC 1 cut(s) 23
BccI CCATC 1 cut(s) 222
BclI TGATCA 1 cut(s) 144
BcoDI GTCTC 1 cut(s) 290
BfrI CTTAAG 2 cut(s) 119, 289
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
BmsI GCATC 1 cut(s) 253
BsaAI YACGTR 1 cut(s) 161
BseGI GGATG 1 cut(s) 147
BseRI GAGGAG 2 cut(s) 248, 251
BseXI GCAGC 1 cut(s) 23
BsmAI GTCTC 1 cut(s) 290
BsmI GAATGC 1 cut(s) 26
Bsp143I GATC 2 cut(s) 144, 235
BspTI CTTAAG 2 cut(s) 119, 289
BssMI GATC 2 cut(s) 144, 235
BstAFI CTTAAG 2 cut(s) 119, 289
BstBAI YACGTR 1 cut(s) 161
BstC8I GCNNGC 1 cut(s) 242
BstF5I GGATG 1 cut(s) 147
BstKTI GATC 2 cut(s) 147, 238
BstMAI GTCTC 1 cut(s) 290
BstMBI GATC 2 cut(s) 144, 235
BstV1I GCAGC 1 cut(s) 23
BtsCI GGATG 1 cut(s) 147
Cac8I GCNNGC 1 cut(s) 242
CseI GACGC 2 cut(s) 49, 115
CviAII CATG 2 cut(s) 31, 193
CviJI RGCY 3 cut(s) 77, 112, 274
CviKI_1 RGCY 3 cut(s) 77, 112, 274
DpnI GATC 2 cut(s) 146, 237
DpnII GATC 2 cut(s) 144, 235
FaeI CATG 2 cut(s) 34, 196
FaiI YATR 3 cut(s) 32, 74, 194
FatI CATG 2 cut(s) 30, 192
FbaI TGATCA 1 cut(s) 144
Fnu4HI GCNGC 1 cut(s) 12
FokI GGATG 1 cut(s) 134
Fsp4HI GCNGC 1 cut(s) 12
GluI GCNGC 1 cut(s) 12
HgaI GACGC 2 cut(s) 49, 115
Hin1II CATG 2 cut(s) 34, 196
HphI GGTGA 2 cut(s) 149, 202
Hpy188I TCNGA 1 cut(s) 152
Hpy188III TCNNGA 1 cut(s) 218
HpyCH4IV ACGT 1 cut(s) 160
HpyCH4V TGCA 2 cut(s) 11, 186
HpySE526I ACGT 1 cut(s) 160
Hsp92II CATG 2 cut(s) 34, 196
Ksp22I TGATCA 1 cut(s) 144
Kzo9I GATC 2 cut(s) 144, 235
LmnI GCTCC 3 cut(s) 23, 164, 279
LpnPI CCDG 2 cut(s) 63, 203
Lsp1109I GCAGC 1 cut(s) 23
LweI GCATC 1 cut(s) 253
MaeII ACGT 1 cut(s) 160
MaeIII GTNAC 1 cut(s) 137
MalI GATC 2 cut(s) 146, 237
MboI GATC 2 cut(s) 144, 235
MluCI AATT 3 cut(s) 92, 153, 201
MnlI CCTC 6 cut(s) 92, 127, 200, 266, 269, 272
MseI TTAA 3 cut(s) 65, 120, 290
MspCI CTTAAG 2 cut(s) 119, 289
Mva1269I GAATGC 1 cut(s) 26
NdeII GATC 2 cut(s) 144, 235
NlaIII CATG 2 cut(s) 34, 196
NmeAIII GCCGAG 1 cut(s) 67
NmuCI GTSAC 1 cut(s) 137
PctI GAATGC 1 cut(s) 26
PkrI GCNGC 1 cut(s) 13
Ppu21I YACGTR 1 cut(s) 161
SaqAI TTAA 3 cut(s) 65, 120, 290
SatI GCNGC 1 cut(s) 12
Sau3AI GATC 2 cut(s) 144, 235
SetI ASST 6 cut(s) 79, 114, 163, 192, 258, 276
SfaNI GCATC 1 cut(s) 253
SmlI CTYRAG 2 cut(s) 119, 289
SmoI CTYRAG 2 cut(s) 119, 289
Sse9I AATT 3 cut(s) 92, 153, 201
TaiI ACGT 1 cut(s) 163
TasI AATT 3 cut(s) 92, 153, 201
Tru1I TTAA 3 cut(s) 65, 120, 290
Tru9I TTAA 3 cut(s) 65, 120, 290
TseFI GTSAC 1 cut(s) 137
TseI GCWGC 1 cut(s) 11
Tsp45I GTSAC 1 cut(s) 137
TspDTI ATGAA 1 cut(s) 19
Vha464I CTTAAG 2 cut(s) 119, 289
XapI RAATTY 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.