FvH4_4g13901

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000637
Physical Location & Seq
Forward (+)
17419106 .. 17420084
979 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g13901.t1

Sequence Viewer

Length: 900 bp
ATGGAGTCGCTACTCTTGGATATTCCTTTTGTTTGCAAGTCATGGCACAAAGAAACACTAAATCCTTCTTGCTGGAATAGTCTCATCTTTCCGGACTTTGAACCTGAATTTCCTTACAATGAACGTGATTATCCAATCTTTGACAGATTTGTTTCTGAATTTGGCCTTGATAGGGATCACTTCTCTGTAACTGCCTTTATAAAGTTTGTTGTCAATCGTAGCCAAGGAAATGCTGTTTCTCTCAAGCTACCTGGATGCTCGTCCCTAGAAGCCTTTGAATATGTTACAGATGAGTGCCCTAACATTATGTTTTTTGGTTTACCAAGATGTTTGTTGTGGAAAGACGACATCGATCTGGAATTGATGGGCAAGTTCAAGAACTTGTTCATGTTGGCCTTGGGCTGCAGCACTTATTTGGACAGAGTTCTTGCAGTAGTCAACAAACACTGCAAGCTTTTTTCTCATTTGATACTGTCTAATGCCCAAATTGGTAAGAAAGAGGCTACGGCAATTGTCAACTTAATCCCTGATATTAAGCTTTTGAGCCTGAATGATGCACAGATTGATCGGGATTATCTTATCATATTACTGAAGGGCTGCAAAGAACTTGTGATGTTGGAAGCCAAGGATTGTATTGGTTTCGATGAGGGTGATGATGAAATAGCAAAGATGGCTTCTCATGTCAAAAGCTTTCACTGTGAGGGATCTAAAGAGCGCTTTGAACATCCATTTAATATGTCTTCTTTTTATCAATTTTTTTCTTCATTGACGAAAGATCGAGTCAAAGAAATAGGTTCAATGTTTGCAGAGATTGATGCAGAGGCAGAGGTTGATGGAGAGGGTGAGGGTGAGGGTGAGGGAGAGGGAGAGGTTGATATTGAAGATAGGGTTGAACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

300

Amino Acids

34.01

Weight (kDa)

4.62

Isoelectric Point (pI)

31.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000637)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13771 FvH4_4g13861 FvH4_4g13862 FvH4_4g13890 FvH4_4g13890 FvH4_4g13890 FvH4_4g13901
malus_domestica MD04G1010000.v1.1
prunus_persica Prupe.1G009600_v2.0.a1 Prupe.1G010100_v2.0.a1 Prupe.1G012400_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G157400_v2.0.a1 Prupe.1G157500_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.2G138900_v2.0.a1 Prupe.6G053000_v2.0.a1
pyrus_communis pycom04g00810
rosa_chinensis RchiOBHm_Chr4g0414621 RchiOBHm_Chr4g0414631 RchiOBHm_Chr4g0414641 RchiOBHm_Chr4g0415011 RchiOBHm_Chr4g0415031
rosa_laevigata RLG00000008101 RLG00000008104 RLG00000008138 RLG00000008139 RLG00000008140 RLG00000008354
rosa_multiflora Rmu_co8247483.1_g000001 Rmu_sc0003611.1_g000009 Rmu_sc0003611.1_g000014 Rmu_sc0007034.1_g000033 Rmu_sc0007391.1_g000006 Rmu_sc0011778.1_g000017 Rmu_sc0016172.1_g000002
rosa_roxburghii Rroxscaffold_5G00358400 Rroxscaffold_5G00358430 Rroxscaffold_5G00358610 Rroxscaffold_5G00358740 Rroxscaffold_5G00358750 Rroxscaffold_5G00358770
rosa_rugosa Rorug04G0108700 Rorug04G0128400 Rorug04G0128500 Rorug04G0128900 Rorug04G0129000 Rorug04G0129100 Rorug04G0131400 Rorug04G0131500 Rorug04G0131600 Rorug04G0131800 Rorug04G0131900
rosa_samantha Rh4AG187100 Rh4AG187200 Rh4AG190700 Rh4AG191200 Rh4BG185800 Rh4BG186100 Rh4BG188700 Rh4BG188900 Rh4BG189300 Rh4CG199200 Rh4CG199700 Rh4CG201900 Rh4CG202100 Rh4DG185400 Rh4DG185700 Rh4DG189300 Rh4DG189700 Rh6CG237600
rosa_wichuraiana Rw4G015970 Rw4G016000 Rw4G016240 Rw4G016260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 200
AccIII TCCGGA 1 cut(s) 91
AclWI GGATC 2 cut(s) 183, 712
AcsI RAATTY 2 cut(s) 107, 158
AcuI CTGAAG 1 cut(s) 611
AfeI AGCGCT 1 cut(s) 716
AfiI CCNNNNNNNGG 1 cut(s) 172
AgsI TTSAA 7 cut(s) 101, 278, 376, 722, 798, 881, 893
AjnI CCWGG 1 cut(s) 250
AluBI AGCT 4 cut(s) 247, 454, 538, 690
AluI AGCT 4 cut(s) 247, 454, 538, 690
Alw26I GTCTC 1 cut(s) 86
AlwI GGATC 2 cut(s) 183, 712
Aor13HI TCCGGA 1 cut(s) 91
Aor51HI AGCGCT 1 cut(s) 716
AoxI GGCC 2 cut(s) 163, 393
ApeKI GCWGC 3 cut(s) 402, 405, 597
ApoI RAATTY 2 cut(s) 107, 158
Asp700I GAANNNNTTC 1 cut(s) 383
AspLEI GCGC 1 cut(s) 717
AsuHPI GGTGA 4 cut(s) 662, 854, 860, 866
BaeGI GKGCMC 1 cut(s) 299
BbsI GAAGAC 1 cut(s) 732
BbvI GCAGC 3 cut(s) 389, 417, 584
BccI CCATC 3 cut(s) 358, 664, 827
BceAI ACGGC 1 cut(s) 522
BciT130I CCWGG 1 cut(s) 252
BcoDI GTCTC 1 cut(s) 86
BfaI CTAG 1 cut(s) 266
BfmI CTRYAG 1 cut(s) 403
BfoI RGCGCY 1 cut(s) 718
BisI GCNGC 3 cut(s) 403, 406, 598
BlsI GCNGC 3 cut(s) 404, 407, 599
Bme1390I CCNGG 1 cut(s) 252
BmrFI CCNGG 1 cut(s) 252
BmsI GCATC 3 cut(s) 245, 544, 805
BpiI GAAGAC 1 cut(s) 732
BpuEI CTTGAG 1 cut(s) 227
Bsa29I ATCGAT 1 cut(s) 351
BsaBI GATNNNNATC 1 cut(s) 174
BsaJI CCNNGG 3 cut(s) 223, 396, 624
BsaWI WCCGGW 1 cut(s) 91
Bsc4I CCNNNNNNNGG 1 cut(s) 172
Bse8I GATNNNNATC 1 cut(s) 174
BseAI TCCGGA 1 cut(s) 91
BseBI CCWGG 1 cut(s) 252
BseCI ATCGAT 1 cut(s) 351
BseDI CCNNGG 3 cut(s) 223, 396, 624
BseGI GGATG 2 cut(s) 260, 724
BseJI GATNNNNATC 1 cut(s) 174
BseLI CCNNNNNNNGG 1 cut(s) 172
BseSI GKGCMC 1 cut(s) 299
BseXI GCAGC 3 cut(s) 389, 417, 584
BshFI GGCC 2 cut(s) 165, 395
BshVI ATCGAT 1 cut(s) 351
BsiSI CCGG 1 cut(s) 92
BslFI GGGAC 1 cut(s) 247
BslI CCNNNNNNNGG 1 cut(s) 172
BsmAI GTCTC 1 cut(s) 86
BsmFI GGGAC 1 cut(s) 247
BsnI GGCC 2 cut(s) 165, 395
Bsp1286I GDGCHC 1 cut(s) 299
Bsp13I TCCGGA 1 cut(s) 91
Bsp143I GATC 5 cut(s) 175, 352, 565, 704, 775
BspANI GGCC 2 cut(s) 165, 395
BspDI ATCGAT 1 cut(s) 351
BspEI TCCGGA 1 cut(s) 91
BspMAI CTGCAG 1 cut(s) 407
BspPI GGATC 2 cut(s) 183, 712
BssECI CCNNGG 3 cut(s) 223, 396, 624
BssMI GATC 5 cut(s) 175, 352, 565, 704, 775
BssT1I CCWWGG 3 cut(s) 223, 396, 624
Bst2UI CCWGG 1 cut(s) 252
Bst4CI ACNGT 2 cut(s) 474, 698
BstC8I GCNNGC 1 cut(s) 452
BstF5I GGATG 2 cut(s) 260, 724
BstH2I RGCGCY 1 cut(s) 718
BstHHI GCGC 1 cut(s) 717
BstKTI GATC 5 cut(s) 178, 355, 568, 707, 778
BstMAI GTCTC 1 cut(s) 86
BstMBI GATC 5 cut(s) 175, 352, 565, 704, 775
BstMWI GCNNNNNNNGC 1 cut(s) 671
BstNI CCWGG 1 cut(s) 252
BstSCI CCNGG 1 cut(s) 250
BstSFI CTRYAG 1 cut(s) 403
BstSLI GKGCMC 1 cut(s) 299
BstV1I GCAGC 3 cut(s) 389, 417, 584
BstV2I GAAGAC 1 cut(s) 732
BstX2I RGATCY 1 cut(s) 704
BstYI RGATCY 1 cut(s) 704
Bsu15I ATCGAT 1 cut(s) 351
BsuRI GGCC 2 cut(s) 165, 395
BsuTUI ATCGAT 1 cut(s) 351
BtsCI GGATG 2 cut(s) 260, 724
BtsI GCAGTG 1 cut(s) 445
BtsIMutI CAGTG 2 cut(s) 445, 694
Cac8I GCNNGC 1 cut(s) 452
CfoI GCGC 1 cut(s) 717
ClaI ATCGAT 1 cut(s) 351
CviAII CATG 3 cut(s) 42, 388, 680
DpnI GATC 5 cut(s) 177, 354, 567, 706, 777
DpnII GATC 5 cut(s) 175, 352, 565, 704, 775
Eco130I CCWWGG 3 cut(s) 223, 396, 624
Eco47III AGCGCT 1 cut(s) 716
Eco57I CTGAAG 1 cut(s) 611
EcoRII CCWGG 1 cut(s) 250
EcoT14I CCWWGG 3 cut(s) 223, 396, 624
ErhI CCWWGG 3 cut(s) 223, 396, 624
FaeI CATG 3 cut(s) 45, 391, 683
FaiI YATR 8 cut(s) 43, 200, 282, 308, 389, 584, 681, 737
FaqI GGGAC 1 cut(s) 247
FatI CATG 3 cut(s) 41, 387, 679
Fnu4HI GCNGC 3 cut(s) 403, 406, 598
FokI GGATG 2 cut(s) 267, 711
Fsp4HI GCNGC 3 cut(s) 403, 406, 598
FspBI CTAG 1 cut(s) 266
GlaI GCGC 1 cut(s) 716
GluI GCNGC 3 cut(s) 403, 406, 598
HaeII RGCGCY 1 cut(s) 718
HaeIII GGCC 2 cut(s) 165, 395
HapII CCGG 1 cut(s) 92
HhaI GCGC 1 cut(s) 717
Hin1II CATG 3 cut(s) 45, 391, 683
Hin6I GCGC 1 cut(s) 715
HinP1I GCGC 1 cut(s) 715
HincII GTYRAC 2 cut(s) 439, 517
HindII GTYRAC 2 cut(s) 439, 517
HindIII AAGCTT 3 cut(s) 452, 536, 688
HinfI GANTC 2 cut(s) 5, 780
HpaII CCGG 1 cut(s) 92
HphI GGTGA 4 cut(s) 662, 854, 860, 866
Hpy166II GTNNAC 3 cut(s) 320, 439, 517
Hpy188I TCNGA 1 cut(s) 157
Hpy188III TCNNGA 4 cut(s) 92, 356, 376, 569
Hpy8I GTNNAC 3 cut(s) 320, 439, 517
HpyAV CCTTC 2 cut(s) 75, 586
HpyCH4III ACNGT 2 cut(s) 474, 698
HpyCH4IV ACGT 1 cut(s) 124
HpyCH4V TGCA 8 cut(s) 36, 405, 431, 450, 557, 600, 806, 818
HpyF10VI GCNNNNNNNGC 1 cut(s) 671
HpySE526I ACGT 1 cut(s) 124
Hsp92II CATG 3 cut(s) 45, 391, 683
HspAI GCGC 1 cut(s) 715
Kpn2I TCCGGA 1 cut(s) 91
Kzo9I GATC 5 cut(s) 175, 352, 565, 704, 775
LpnPI CCDG 8 cut(s) 58, 105, 117, 237, 264, 341, 540, 560
Lsp1109I GCAGC 3 cut(s) 389, 417, 584
LweI GCATC 3 cut(s) 245, 544, 805
MaeI CTAG 1 cut(s) 266
MaeII ACGT 1 cut(s) 124
MaeIII GTNAC 2 cut(s) 187, 283
MalI GATC 5 cut(s) 177, 354, 567, 706, 777
MboI GATC 5 cut(s) 175, 352, 565, 704, 775
MboII GAAGA 3 cut(s) 732, 753, 893
MfeI CAATTG 1 cut(s) 510
MflI RGATCY 1 cut(s) 704
MhlI GDGCHC 1 cut(s) 299
MluCI AATT 6 cut(s) 107, 158, 359, 486, 510, 752
MlyI GAGTC 2 cut(s) 14, 789
MmeI TCCRAC 1 cut(s) 597
MroI TCCGGA 1 cut(s) 91
MroXI GAANNNNTTC 1 cut(s) 383
MseI TTAA 3 cut(s) 521, 534, 732
MspI CCGG 1 cut(s) 92
MspR9I CCNGG 1 cut(s) 252
MunI CAATTG 1 cut(s) 510
MvaI CCWGG 1 cut(s) 252
MwoI GCNNNNNNNGC 1 cut(s) 671
NdeII GATC 5 cut(s) 175, 352, 565, 704, 775
NlaIII CATG 3 cut(s) 45, 391, 683
PdmI GAANNNNTTC 1 cut(s) 383
PkrI GCNGC 3 cut(s) 404, 407, 599
PleI GAGTC 2 cut(s) 13, 788
PpsI GAGTC 2 cut(s) 13, 788
PsiI TTATAA 1 cut(s) 200
Psp6I CCWGG 1 cut(s) 250
PspGI CCWGG 1 cut(s) 250
PstI CTGCAG 1 cut(s) 407
PsuI RGATCY 1 cut(s) 704
SaqAI TTAA 3 cut(s) 521, 534, 732
SatI GCNGC 3 cut(s) 403, 406, 598
Sau3AI GATC 5 cut(s) 175, 352, 565, 704, 775
SchI GAGTC 2 cut(s) 14, 789
ScrFI CCNGG 1 cut(s) 252
SduI GDGCHC 1 cut(s) 299
SfaNI GCATC 3 cut(s) 245, 544, 805
SfcI CTRYAG 1 cut(s) 403
SmlI CTYRAG 1 cut(s) 242
SmoI CTYRAG 1 cut(s) 242
Sse9I AATT 6 cut(s) 107, 158, 359, 486, 510, 752
SspMI CTAG 1 cut(s) 266
StyD4I CCNGG 1 cut(s) 250
StyI CCWWGG 3 cut(s) 223, 396, 624
TaaI ACNGT 2 cut(s) 474, 698
TaiI ACGT 1 cut(s) 127
TaqI TCGA 3 cut(s) 351, 642, 778
TasI AATT 6 cut(s) 107, 158, 359, 486, 510, 752
Tru1I TTAA 3 cut(s) 521, 534, 732
Tru9I TTAA 3 cut(s) 521, 534, 732
TscAI CASTG 2 cut(s) 452, 701
TseI GCWGC 3 cut(s) 402, 405, 597
TspDTI ATGAA 4 cut(s) 135, 376, 672, 753
TspRI CASTG 2 cut(s) 452, 701
XapI RAATTY 2 cut(s) 107, 158
XmnI GAANNNNTTC 1 cut(s) 383
XspI CTAG 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.