Rorug04G0131500

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000637
Physical Location & Seq
Forward (+)
21069195 .. 21072395
3201 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0131500.1

Sequence Viewer

Length: 1020 bp
ATGAGGGCTTTGAGCTGGGGTCCGATTACGGCAGTCAGGGCTTTGAGCCCAGAAGGGTCGTTACGAGAGCTCGATTATTCACCGGTTTCAGTGGAGCTCGCGCCCTTCTGCAGCAAAGGCCAGTTTGATCGGCTCGTCGCTGAGGCTCAACAGCTCCAGCAGTTGTTCGTCATCATTTGGGCAAGCATTACTCCTAGAATTATCGTCATTATTTTGGCTGGAAGCTTCAAAAGCAATGAAATTATCCTTTTCAAGCACATAAATTGCAGTAAAGGAATAAGGACAATAAGGTGTGCACATTTTGCAATTCATGATGAGGATAGGAGGCAGCCAAGAAAGCCATTCTGCATGGTACAAATTTATTATGAAAATTTGCAACTTTGCAAGATATGTCTTTTCATTGTATACTGCATCCATTTTGGATTGCTTCTTAGTAGGTTTGATAAAATTCTAAATGAGATGTTAAGTCACTTGGAGCGCCAGCCTAGGAACAAGGAGCGCCGTGTTGCATGGCTTCGTTACGTAGAGCCGCTTTTTAATGGTGTTGGTCAGGTGTTACTAGCTCATTTCAGGCGCATTTTCCCTCTTTTCTTTAAGTGGATGCAAGCTGATGACGATGAGACTGTTTTACTAGTTCTCAAACAGATTGAAACAGTTATAAAGCTAACATGGATTAGGAATACACCATATGTGGAAAGGTTGGTGGATGAACTTGCTACTTTGCACAAAGAAGCAACATTGAGAAGATCTCGTGAAGAAATTCGAAATCTTGTTATTCATATACTAATCTTGCTCCATCAATGCAAGGGTCTGCAGTTCGAAGCAGCCTGGGGCAAGCACAGAGATGATCCAAACTTGGCAACAATTGCTCCCGCTCCCTCTTTGCTTCTTGGGGCTTCCTATTTGCTGATTACGGCAAAGACACCCGGATTAGATGAGCTAAGTTATGACTTTGTAACTTTCGGCGATGCTTATGATGCATATGGTGCACAAACCACAAATTGCAGAATGCCTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

339

Amino Acids

39.14

Weight (kDa)

8.81

Isoelectric Point (pI)

42.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000637)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13771 FvH4_4g13861 FvH4_4g13862 FvH4_4g13890 FvH4_4g13890 FvH4_4g13890 FvH4_4g13901
malus_domestica MD04G1010000.v1.1
prunus_persica Prupe.1G009600_v2.0.a1 Prupe.1G010100_v2.0.a1 Prupe.1G012400_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G157400_v2.0.a1 Prupe.1G157500_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.2G138900_v2.0.a1 Prupe.6G053000_v2.0.a1
pyrus_communis pycom04g00810
rosa_chinensis RchiOBHm_Chr4g0414621 RchiOBHm_Chr4g0414631 RchiOBHm_Chr4g0414641 RchiOBHm_Chr4g0415011 RchiOBHm_Chr4g0415031
rosa_laevigata RLG00000008101 RLG00000008104 RLG00000008138 RLG00000008139 RLG00000008140 RLG00000008354
rosa_multiflora Rmu_co8247483.1_g000001 Rmu_sc0003611.1_g000009 Rmu_sc0003611.1_g000014 Rmu_sc0007034.1_g000033 Rmu_sc0007391.1_g000006 Rmu_sc0011778.1_g000017 Rmu_sc0016172.1_g000002
rosa_roxburghii Rroxscaffold_5G00358400 Rroxscaffold_5G00358430 Rroxscaffold_5G00358610 Rroxscaffold_5G00358740 Rroxscaffold_5G00358750 Rroxscaffold_5G00358770
rosa_rugosa Rorug04G0108700 Rorug04G0128400 Rorug04G0128500 Rorug04G0128900 Rorug04G0129000 Rorug04G0129100 Rorug04G0131400 Rorug04G0131500 Rorug04G0131600 Rorug04G0131800 Rorug04G0131900
rosa_samantha Rh4AG187100 Rh4AG187200 Rh4AG190700 Rh4AG191200 Rh4BG185800 Rh4BG186100 Rh4BG188700 Rh4BG188900 Rh4BG189300 Rh4CG199200 Rh4CG199700 Rh4CG201900 Rh4CG202100 Rh4DG185400 Rh4DG185700 Rh4DG189300 Rh4DG189700 Rh6CG237600
rosa_wichuraiana Rw4G015970 Rw4G016000 Rw4G016240 Rw4G016260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 659
AccBSI CCGCTC 1 cut(s) 875
AccI GTMKAC 1 cut(s) 405
AccII CGCG 1 cut(s) 101
AciI CCGC 2 cut(s) 530, 873
AclWI GGATC 1 cut(s) 842
AcsI RAATTY 4 cut(s) 357, 370, 447, 759
AfaI GTAC 1 cut(s) 354
AgeI ACCGGT 1 cut(s) 82
AgsI TTSAA 3 cut(s) 229, 253, 650
AhlI ACTAGT 1 cut(s) 631
AjnI CCWGG 1 cut(s) 827
AluBI AGCT 9 cut(s) 15, 70, 97, 154, 225, 563, 608, 664, 940
AluI AGCT 9 cut(s) 15, 70, 97, 154, 225, 563, 608, 664, 940
Alw21I GWGCWC 4 cut(s) 72, 99, 298, 991
Alw26I GTCTC 1 cut(s) 614
Alw44I GTGCAC 2 cut(s) 294, 987
AlwI GGATC 1 cut(s) 842
AoxI GGCC 1 cut(s) 118
ApaLI GTGCAC 2 cut(s) 294, 987
ApeKI GCWGC 3 cut(s) 111, 328, 824
ApoI RAATTY 4 cut(s) 357, 370, 447, 759
AsiGI ACCGGT 1 cut(s) 82
Asp700I GAANNNNTTC 1 cut(s) 759
AspA2I CCTAGG 1 cut(s) 485
AspLEI GCGC 4 cut(s) 103, 480, 501, 576
AspS9I GGNCC 1 cut(s) 20
AsuC2I CCSGG 1 cut(s) 927
AsuHPI GGTGA 1 cut(s) 72
AsuII TTCGAA 2 cut(s) 763, 819
AvaII GGWCC 1 cut(s) 20
AvrII CCTAGG 1 cut(s) 485
BaeGI GKGCMC 2 cut(s) 298, 991
BanII GRGCYC 3 cut(s) 50, 72, 99
BarI GAAGNNNNNNTAC 2 cut(s) 45, 77
BauI CACGAG 1 cut(s) 750
Bbv12I GWGCWC 4 cut(s) 72, 99, 298, 991
BbvCI CCTCAGC 1 cut(s) 141
BbvI GCAGC 3 cut(s) 123, 340, 836
BccI CCATC 1 cut(s) 804
BceAI ACGGC 3 cut(s) 45, 486, 930
BciT130I CCWGG 1 cut(s) 829
BcnI CCSGG 1 cut(s) 927
BcoDI GTCTC 1 cut(s) 614
BcuI ACTAGT 1 cut(s) 631
BfaI CTAG 4 cut(s) 195, 486, 560, 632
BfmI CTRYAG 2 cut(s) 109, 812
BfoI RGCGCY 2 cut(s) 481, 502
BglII AGATCT 1 cut(s) 746
BisI GCNGC 4 cut(s) 112, 329, 530, 825
BlnI CCTAGG 1 cut(s) 485
BlsI GCNGC 4 cut(s) 113, 330, 531, 826
Bme1390I CCNGG 2 cut(s) 829, 927
Bme18I GGWCC 1 cut(s) 20
BmgT120I GGNCC 1 cut(s) 20
BmiI GGNNCC 1 cut(s) 21
BmrFI CCNGG 2 cut(s) 829, 927
BmsI GCATC 4 cut(s) 420, 591, 958, 967
BplI GAGNNNNNCTC 2 cut(s) 733, 765
BpmI CTGGAG 1 cut(s) 140
Bpu10I CCTNAGC 1 cut(s) 141
Bpu14I TTCGAA 2 cut(s) 763, 819
BpuMI CCSGG 1 cut(s) 927
BsaAI YACGTR 1 cut(s) 523
BsaJI CCNNGG 2 cut(s) 485, 828
BsaWI WCCGGW 1 cut(s) 82
BsaXI ACNNNNNCTCC 2 cut(s) 853, 883
Bse118I RCCGGY 1 cut(s) 82
Bse1I ACTGG 1 cut(s) 121
Bse3DI GCAATG 1 cut(s) 241
BseBI CCWGG 1 cut(s) 829
BseDI CCNNGG 2 cut(s) 485, 828
BseGI GGATG 3 cut(s) 411, 606, 712
BseMI GCAATG 1 cut(s) 241
BseMII CTCAG 1 cut(s) 132
BseNI ACTGG 1 cut(s) 121
BseSI GKGCMC 2 cut(s) 298, 991
BseXI GCAGC 3 cut(s) 123, 340, 836
BseYI CCCAGC 1 cut(s) 15
Bsh1236I CGCG 1 cut(s) 101
BshFI GGCC 1 cut(s) 120
BshTI ACCGGT 1 cut(s) 82
BsiHKAI GWGCWC 4 cut(s) 72, 99, 298, 991
BsiSI CCGG 2 cut(s) 83, 927
BsmAI GTCTC 1 cut(s) 614
BsmI GAATGC 1 cut(s) 1014
BsnI GGCC 1 cut(s) 120
Bsp119I TTCGAA 2 cut(s) 763, 819
Bsp1286I GDGCHC 5 cut(s) 50, 72, 99, 298, 991
Bsp143I GATC 3 cut(s) 127, 746, 847
BspACI CCGC 2 cut(s) 530, 873
BspANI GGCC 1 cut(s) 120
BspCNI CTCAG 1 cut(s) 133
BspFNI CGCG 1 cut(s) 101
BspHI TCATGA 1 cut(s) 310
BspLI GGNNCC 1 cut(s) 21
BspMAI CTGCAG 2 cut(s) 113, 816
BspPI GGATC 1 cut(s) 842
BspT104I TTCGAA 2 cut(s) 763, 819
BsrBI CCGCTC 1 cut(s) 875
BsrDI GCAATG 1 cut(s) 241
BsrFI RCCGGY 1 cut(s) 82
BsrI ACTGG 1 cut(s) 121
BssAI RCCGGY 1 cut(s) 82
BssECI CCNNGG 2 cut(s) 485, 828
BssMI GATC 3 cut(s) 127, 746, 847
BssNAI GTATAC 1 cut(s) 406
BssSI CACGAG 1 cut(s) 750
BssT1I CCWWGG 1 cut(s) 485
Bst1107I GTATAC 1 cut(s) 406
Bst2BI CACGAG 1 cut(s) 750
Bst2UI CCWGG 1 cut(s) 829
Bst4CI ACNGT 2 cut(s) 625, 655
BstAPI GCANNNNNTGC 3 cut(s) 302, 866, 986
BstBAI YACGTR 1 cut(s) 523
BstBI TTCGAA 2 cut(s) 763, 819
BstC8I GCNNGC 5 cut(s) 99, 184, 482, 606, 836
BstDEI CTNAG 3 cut(s) 141, 431, 941
BstF5I GGATG 3 cut(s) 411, 606, 712
BstFNI CGCG 1 cut(s) 101
BstH2I RGCGCY 2 cut(s) 481, 502
BstHHI GCGC 4 cut(s) 103, 480, 501, 576
BstKTI GATC 3 cut(s) 130, 749, 850
BstMAI GTCTC 1 cut(s) 614
BstMBI GATC 3 cut(s) 127, 746, 847
BstMWI GCNNNNNNNGC 8 cut(s) 38, 117, 231, 302, 337, 866, 977, 986
BstNI CCWGG 1 cut(s) 829
BstSCI CCNGG 2 cut(s) 827, 925
BstSFI CTRYAG 2 cut(s) 109, 812
BstSLI GKGCMC 2 cut(s) 298, 991
BstSNI TACGTA 1 cut(s) 523
BstUI CGCG 1 cut(s) 101
BstV1I GCAGC 3 cut(s) 123, 340, 836
BstX2I RGATCY 1 cut(s) 746
BstYI RGATCY 1 cut(s) 746
BstZ17I GTATAC 1 cut(s) 406
BsuRI GGCC 1 cut(s) 120
BtgZI GCGATG 1 cut(s) 981
BtsCI GGATG 3 cut(s) 411, 606, 712
BtsIMutI CAGTG 1 cut(s) 96
Cac8I GCNNGC 5 cut(s) 99, 184, 482, 606, 836
CciI TCATGA 1 cut(s) 310
CfoI GCGC 4 cut(s) 103, 480, 501, 576
Cfr10I RCCGGY 1 cut(s) 82
Cfr13I GGNCC 1 cut(s) 20
Csp6I GTAC 1 cut(s) 353
CspAI ACCGGT 1 cut(s) 82
CviAII CATG 4 cut(s) 311, 349, 510, 669
CviQI GTAC 1 cut(s) 353
DdeI CTNAG 3 cut(s) 141, 431, 941
DpnI GATC 3 cut(s) 129, 748, 849
DpnII GATC 3 cut(s) 127, 746, 847
Ecl136II GAGCTC 2 cut(s) 70, 97
Eco105I TACGTA 1 cut(s) 523
Eco130I CCWWGG 1 cut(s) 485
Eco24I GRGCYC 3 cut(s) 50, 72, 99
Eco47I GGWCC 1 cut(s) 20
Eco53kI GAGCTC 2 cut(s) 70, 97
EcoICRI GAGCTC 2 cut(s) 70, 97
EcoRII CCWGG 1 cut(s) 827
EcoT14I CCWWGG 1 cut(s) 485
EcoT22I ATGCAT 1 cut(s) 982
EcoT38I GRGCYC 3 cut(s) 50, 72, 99
ErhI CCWWGG 1 cut(s) 485
FaeI CATG 4 cut(s) 314, 352, 513, 672
FatI CATG 4 cut(s) 310, 348, 509, 668
FauI CCCGC 1 cut(s) 880
FauNDI CATATG 2 cut(s) 688, 982
FblI GTMKAC 1 cut(s) 405
Fnu4HI GCNGC 4 cut(s) 112, 329, 530, 825
FokI GGATG 3 cut(s) 398, 613, 719
FriOI GRGCYC 3 cut(s) 50, 72, 99
Fsp4HI GCNGC 4 cut(s) 112, 329, 530, 825
FspBI CTAG 4 cut(s) 195, 486, 560, 632
GlaI GCGC 4 cut(s) 102, 479, 500, 575
GluI GCNGC 4 cut(s) 112, 329, 530, 825
GsaI CCCAGC 1 cut(s) 19
GsuI CTGGAG 1 cut(s) 140
HaeII RGCGCY 2 cut(s) 481, 502
HaeIII GGCC 1 cut(s) 120
HapII CCGG 2 cut(s) 83, 927
HhaI GCGC 4 cut(s) 103, 480, 501, 576
Hin1II CATG 4 cut(s) 314, 352, 513, 672
Hin6I GCGC 4 cut(s) 101, 478, 499, 574
HinP1I GCGC 4 cut(s) 101, 478, 499, 574
HindIII AAGCTT 1 cut(s) 223
HpaII CCGG 2 cut(s) 83, 927
HphI GGTGA 1 cut(s) 72
Hpy166II GTNNAC 3 cut(s) 296, 406, 989
Hpy188I TCNGA 1 cut(s) 24
Hpy188III TCNNGA 2 cut(s) 311, 752
Hpy8I GTNNAC 3 cut(s) 296, 406, 989
Hpy99I CGWCG 1 cut(s) 140
HpyAV CCTTC 2 cut(s) 47, 115
HpyCH4III ACNGT 2 cut(s) 625, 655
HpyCH4IV ACGT 1 cut(s) 522
HpyF10VI GCNNNNNNNGC 8 cut(s) 38, 117, 231, 302, 337, 866, 977, 986
HpyF3I CTNAG 3 cut(s) 141, 431, 941
HpySE526I ACGT 1 cut(s) 522
Hsp92II CATG 4 cut(s) 314, 352, 513, 672
HspAI GCGC 4 cut(s) 101, 478, 499, 574
Kzo9I GATC 3 cut(s) 127, 746, 847
LmnI GCTCC 7 cut(s) 94, 159, 475, 496, 798, 874, 880
Lsp1109I GCAGC 3 cut(s) 123, 340, 836
LweI GCATC 4 cut(s) 420, 591, 958, 967
MaeI CTAG 4 cut(s) 195, 486, 560, 632
MaeII ACGT 1 cut(s) 522
MaeIII GTNAC 5 cut(s) 60, 467, 518, 555, 955
MalI GATC 3 cut(s) 129, 748, 849
MbiI CCGCTC 1 cut(s) 875
MboI GATC 3 cut(s) 127, 746, 847
MboII GAAGA 2 cut(s) 756, 767
MfeI CAATTG 1 cut(s) 864
MflI RGATCY 1 cut(s) 746
MhlI GDGCHC 5 cut(s) 50, 72, 99, 298, 991
MnlI CCTC 5 cut(s) 136, 310, 318, 594, 889
Mph1103I ATGCAT 1 cut(s) 982
MroXI GAANNNNTTC 1 cut(s) 759
MseI TTAA 3 cut(s) 464, 537, 594
MslI CAYNNNNRTG 1 cut(s) 843
MspI CCGG 2 cut(s) 83, 927
MspR9I CCNGG 2 cut(s) 829, 927
MunI CAATTG 1 cut(s) 864
Mva1269I GAATGC 1 cut(s) 1014
MvaI CCWGG 1 cut(s) 829
MvnI CGCG 1 cut(s) 101
MwoI GCNNNNNNNGC 8 cut(s) 38, 117, 231, 302, 337, 866, 977, 986
NciI CCSGG 1 cut(s) 927
NdeI CATATG 2 cut(s) 688, 982
NdeII GATC 3 cut(s) 127, 746, 847
NlaIII CATG 4 cut(s) 314, 352, 513, 672
NlaIV GGNNCC 1 cut(s) 21
NmuCI GTSAC 1 cut(s) 467
NsiI ATGCAT 1 cut(s) 982
NspV TTCGAA 2 cut(s) 763, 819
PagI TCATGA 1 cut(s) 310
PctI GAATGC 1 cut(s) 1014
PdmI GAANNNNTTC 1 cut(s) 759
PinAI ACCGGT 1 cut(s) 82
PkrI GCNGC 4 cut(s) 113, 330, 531, 826
Ppu21I YACGTR 1 cut(s) 523
PsiI TTATAA 1 cut(s) 659
Psp124BI GAGCTC 2 cut(s) 72, 99
Psp6I CCWGG 1 cut(s) 827
PspFI CCCAGC 1 cut(s) 15
PspGI CCWGG 1 cut(s) 827
PspN4I GGNNCC 1 cut(s) 21
PspPI GGNCC 1 cut(s) 20
PstI CTGCAG 2 cut(s) 113, 816
PsuI RGATCY 1 cut(s) 746
RsaI GTAC 1 cut(s) 354
RsaNI GTAC 1 cut(s) 353
RseI CAYNNNNRTG 1 cut(s) 843
SacI GAGCTC 2 cut(s) 72, 99
SaqAI TTAA 3 cut(s) 464, 537, 594
SatI GCNGC 4 cut(s) 112, 329, 530, 825
Sau3AI GATC 3 cut(s) 127, 746, 847
Sau96I GGNCC 1 cut(s) 20
ScrFI CCNGG 2 cut(s) 829, 927
SduI GDGCHC 5 cut(s) 50, 72, 99, 298, 991
SfaNI GCATC 4 cut(s) 420, 591, 958, 967
SfcI CTRYAG 2 cut(s) 109, 812
SfuI TTCGAA 2 cut(s) 763, 819
SinI GGWCC 1 cut(s) 20
SmiMI CAYNNNNRTG 1 cut(s) 843
SnaBI TACGTA 1 cut(s) 523
SpeI ACTAGT 1 cut(s) 631
SsiI CCGC 2 cut(s) 530, 873
SspMI CTAG 4 cut(s) 195, 486, 560, 632
SstI GAGCTC 2 cut(s) 72, 99
StyD4I CCNGG 2 cut(s) 827, 925
StyI CCWWGG 1 cut(s) 485
TaaI ACNGT 2 cut(s) 625, 655
TaiI ACGT 1 cut(s) 525
TaqI TCGA 3 cut(s) 72, 763, 819
TauI GCSGC 1 cut(s) 532
Tru1I TTAA 3 cut(s) 464, 537, 594
Tru9I TTAA 3 cut(s) 464, 537, 594
TscAI CASTG 1 cut(s) 96
TseFI GTSAC 1 cut(s) 467
TseI GCWGC 3 cut(s) 111, 328, 824
Tsp45I GTSAC 1 cut(s) 467
TspDTI ATGAA 6 cut(s) 252, 299, 381, 388, 723, 767
TspRI CASTG 1 cut(s) 96
VneI GTGCAC 2 cut(s) 294, 987
VpaK11BI GGWCC 1 cut(s) 20
XapI RAATTY 4 cut(s) 357, 370, 447, 759
XmaJI CCTAGG 1 cut(s) 485
XmiI GTMKAC 1 cut(s) 405
XmnI GAANNNNTTC 1 cut(s) 759
XspI CTAG 4 cut(s) 195, 486, 560, 632
Zsp2I ATGCAT 1 cut(s) 982
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.