RchiOBHm_Chr4g0415031

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000637
Physical Location & Seq
Forward (+)
39571633 .. 39574562
2930 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38536

Sequence Viewer

Length: 867 bp
ATGGAGTCGCTACTCTTGGATATTCCTTTTGTGTGCAAGTCATGGCACAAAGAAACACTAAATCCTTCTTGCTGGAAAAGTCTTATCTTTCCGGAATTTGAACCTGGATTTCCTTATGAATTTGATTATCCAATCCATGAAAGATTTGTTTCTGAATTTGGCCTTGATAGCAATCGTGTCTCCGAAACTGCCTTTATAAAGTTTGTTGTCAATCGTAGCCAAGGAAAGGCTGTTTTTCTCAAGCTACCTGGATTCTCTACCGTAGAAGCCTTTGAATATGTTGCAGATGCGTGCCCTAACCTTGTGATTTTGGGTTTACCAAGATATTTGTTGTGGAAAGAAGACATCGATCTCGAATCGATTGGCAAGTTCAAGTACTTGTATCTGTTGTCATTGGGCAGCTGCGATAAATTGGACAGAGTTCTTGCAGTAGTCAGCAAACGGTGCAAGTTGTTTTCTCATTTAACACTGTCTAATGCCCAAATTGGTAAAGAAGAGGTTATGGCAATTGTCAACTTAGTCCCTGATATTAAGCGCCTGAGCTTGAATGAGGCACAAATCGATCGGGATAATCTCATCATATTACTGAAGGGTTGCAAAAAACTTTCGTTCTTGGAGGCCAAGGATTGCATTGGTTTCAATGAGGGTGATGATGAAATAGCAGAGCTGGCTTCTCATATCAGTAAATTTCGCTGTGAGGGATCTAAAGAGCGCATTGAATTTCCATTTGATTTTTCTGAATTTATTCTTTCATCATTAACGGAAGATTCTGTCATAGAAATGGCTTCAATGCTTGCAGAGGTTGATGTAGAGCCAGAGGTTGATGGCGAGGGAGAGGGTGATATTGAAGAAAGTGTTGAACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

288

Amino Acids

32.62

Weight (kDa)

4.59

Isoelectric Point (pI)

45.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000637)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13771 FvH4_4g13861 FvH4_4g13862 FvH4_4g13890 FvH4_4g13890 FvH4_4g13890 FvH4_4g13901
malus_domestica MD04G1010000.v1.1
prunus_persica Prupe.1G009600_v2.0.a1 Prupe.1G010100_v2.0.a1 Prupe.1G012400_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G157400_v2.0.a1 Prupe.1G157500_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.2G138900_v2.0.a1 Prupe.6G053000_v2.0.a1
pyrus_communis pycom04g00810
rosa_chinensis RchiOBHm_Chr4g0414621 RchiOBHm_Chr4g0414631 RchiOBHm_Chr4g0414641 RchiOBHm_Chr4g0415011 RchiOBHm_Chr4g0415031
rosa_laevigata RLG00000008101 RLG00000008104 RLG00000008138 RLG00000008139 RLG00000008140 RLG00000008354
rosa_multiflora Rmu_co8247483.1_g000001 Rmu_sc0003611.1_g000009 Rmu_sc0003611.1_g000014 Rmu_sc0007034.1_g000033 Rmu_sc0007391.1_g000006 Rmu_sc0011778.1_g000017 Rmu_sc0016172.1_g000002
rosa_roxburghii Rroxscaffold_5G00358400 Rroxscaffold_5G00358430 Rroxscaffold_5G00358610 Rroxscaffold_5G00358740 Rroxscaffold_5G00358750 Rroxscaffold_5G00358770
rosa_rugosa Rorug04G0108700 Rorug04G0128400 Rorug04G0128500 Rorug04G0128900 Rorug04G0129000 Rorug04G0129100 Rorug04G0131400 Rorug04G0131500 Rorug04G0131600 Rorug04G0131800 Rorug04G0131900
rosa_samantha Rh4AG187100 Rh4AG187200 Rh4AG190700 Rh4AG191200 Rh4BG185800 Rh4BG186100 Rh4BG188700 Rh4BG188900 Rh4BG189300 Rh4CG199200 Rh4CG199700 Rh4CG201900 Rh4CG202100 Rh4DG185400 Rh4DG185700 Rh4DG189300 Rh4DG189700 Rh6CG237600
rosa_wichuraiana Rw4G015970 Rw4G016000 Rw4G016240 Rw4G016260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 197
AccIII TCCGGA 1 cut(s) 91
AclWI GGATC 1 cut(s) 709
AcsI RAATTY 6 cut(s) 95, 119, 155, 686, 719, 740
AcuI CTGAAG 1 cut(s) 608
AfaI GTAC 1 cut(s) 377
AfiI CCNNNNNNNGG 1 cut(s) 226
AgsI TTSAA 9 cut(s) 101, 275, 373, 547, 640, 719, 789, 848, 860
AjnI CCWGG 2 cut(s) 103, 247
AluBI AGCT 4 cut(s) 244, 402, 543, 667
AluI AGCT 4 cut(s) 244, 402, 543, 667
Alw26I GTCTC 1 cut(s) 184
AlwI GGATC 1 cut(s) 709
Aor13HI TCCGGA 1 cut(s) 91
AoxI GGCC 2 cut(s) 160, 618
ApeKI GCWGC 2 cut(s) 399, 402
ApoI RAATTY 6 cut(s) 95, 119, 155, 686, 719, 740
Asp700I GAANNNNTTC 1 cut(s) 744
AspLEI GCGC 2 cut(s) 537, 714
AsuHPI GGTGA 2 cut(s) 659, 851
BaeGI GKGCMC 1 cut(s) 296
BbsI GAAGAC 1 cut(s) 348
BbvI GCAGC 2 cut(s) 389, 411
BccI CCATC 1 cut(s) 818
BciT130I CCWGG 2 cut(s) 105, 249
BcoDI GTCTC 1 cut(s) 184
BfoI RGCGCY 1 cut(s) 538
BisI GCNGC 2 cut(s) 400, 403
BlsI GCNGC 2 cut(s) 401, 404
BmcAI AGTACT 1 cut(s) 377
Bme1390I CCNGG 2 cut(s) 105, 249
BmrFI CCNGG 2 cut(s) 105, 249
BmsI GCATC 1 cut(s) 277
BpiI GAAGAC 1 cut(s) 348
Bpu10I CCTNAGC 1 cut(s) 539
BpuEI CTTGAG 1 cut(s) 224
Bsa29I ATCGAT 3 cut(s) 348, 359, 561
BsaBI GATNNNNATC 1 cut(s) 171
BsaJI CCNNGG 2 cut(s) 220, 621
BsaWI WCCGGW 1 cut(s) 91
Bsc4I CCNNNNNNNGG 1 cut(s) 226
Bse8I GATNNNNATC 1 cut(s) 171
BseAI TCCGGA 1 cut(s) 91
BseBI CCWGG 2 cut(s) 105, 249
BseCI ATCGAT 3 cut(s) 348, 359, 561
BseDI CCNNGG 2 cut(s) 220, 621
BseJI GATNNNNATC 1 cut(s) 171
BseLI CCNNNNNNNGG 1 cut(s) 226
BseMII CTCAG 1 cut(s) 530
BseSI GKGCMC 1 cut(s) 296
BseXI GCAGC 2 cut(s) 389, 411
Bsh1285I CGRYCG 1 cut(s) 565
BshFI GGCC 2 cut(s) 162, 620
BshVI ATCGAT 3 cut(s) 348, 359, 561
BsiEI CGRYCG 1 cut(s) 565
BsiSI CCGG 1 cut(s) 92
BslFI GGGAC 1 cut(s) 506
BslI CCNNNNNNNGG 1 cut(s) 226
BsmAI GTCTC 1 cut(s) 184
BsmFI GGGAC 1 cut(s) 506
BsnI GGCC 2 cut(s) 162, 620
Bsp1286I GDGCHC 1 cut(s) 296
Bsp13I TCCGGA 1 cut(s) 91
Bsp143I GATC 3 cut(s) 349, 562, 701
BspANI GGCC 2 cut(s) 162, 620
BspCNI CTCAG 1 cut(s) 531
BspDI ATCGAT 3 cut(s) 348, 359, 561
BspEI TCCGGA 1 cut(s) 91
BspPI GGATC 1 cut(s) 709
BssECI CCNNGG 2 cut(s) 220, 621
BssMI GATC 3 cut(s) 349, 562, 701
BssT1I CCWWGG 2 cut(s) 220, 621
Bst2UI CCWGG 2 cut(s) 105, 249
Bst4CI ACNGT 3 cut(s) 262, 444, 471
Bst6I CTCTTC 1 cut(s) 489
BstAPI GCANNNNNTGC 1 cut(s) 444
BstC8I GCNNGC 3 cut(s) 292, 669, 795
BstDEI CTNAG 2 cut(s) 517, 539
BstH2I RGCGCY 1 cut(s) 538
BstHHI GCGC 2 cut(s) 537, 714
BstKTI GATC 3 cut(s) 352, 565, 704
BstMAI GTCTC 1 cut(s) 184
BstMBI GATC 3 cut(s) 349, 562, 701
BstMCI CGRYCG 1 cut(s) 565
BstMWI GCNNNNNNNGC 3 cut(s) 168, 444, 668
BstNI CCWGG 2 cut(s) 105, 249
BstSCI CCNGG 2 cut(s) 103, 247
BstSLI GKGCMC 1 cut(s) 296
BstV1I GCAGC 2 cut(s) 389, 411
BstV2I GAAGAC 1 cut(s) 348
BstX2I RGATCY 1 cut(s) 701
BstYI RGATCY 1 cut(s) 701
Bsu15I ATCGAT 3 cut(s) 348, 359, 561
BsuRI GGCC 2 cut(s) 162, 620
BsuTUI ATCGAT 3 cut(s) 348, 359, 561
BtsIMutI CAGTG 1 cut(s) 467
Cac8I GCNNGC 3 cut(s) 292, 669, 795
CfoI GCGC 2 cut(s) 537, 714
ClaI ATCGAT 3 cut(s) 348, 359, 561
Csp6I GTAC 1 cut(s) 376
CviAII CATG 2 cut(s) 42, 137
CviQI GTAC 1 cut(s) 376
DdeI CTNAG 2 cut(s) 517, 539
DpnI GATC 3 cut(s) 351, 564, 703
DpnII GATC 3 cut(s) 349, 562, 701
Eam1104I CTCTTC 1 cut(s) 489
EarI CTCTTC 1 cut(s) 489
Eco130I CCWWGG 2 cut(s) 220, 621
Eco57I CTGAAG 1 cut(s) 608
EcoRII CCWGG 2 cut(s) 103, 247
EcoT14I CCWWGG 2 cut(s) 220, 621
ErhI CCWWGG 2 cut(s) 220, 621
FaeI CATG 2 cut(s) 45, 140
FaiI YATR 9 cut(s) 43, 117, 138, 197, 279, 503, 581, 678, 776
FaqI GGGAC 1 cut(s) 506
FatI CATG 2 cut(s) 41, 136
Fnu4HI GCNGC 2 cut(s) 400, 403
Fsp4HI GCNGC 2 cut(s) 400, 403
GlaI GCGC 2 cut(s) 536, 713
GluI GCNGC 2 cut(s) 400, 403
HaeII RGCGCY 1 cut(s) 538
HaeIII GGCC 2 cut(s) 162, 620
HapII CCGG 1 cut(s) 92
HhaI GCGC 2 cut(s) 537, 714
Hin1II CATG 2 cut(s) 45, 140
Hin6I GCGC 2 cut(s) 535, 712
HinP1I GCGC 2 cut(s) 535, 712
HincII GTYRAC 1 cut(s) 514
HindII GTYRAC 1 cut(s) 514
HinfI GANTC 4 cut(s) 5, 252, 356, 767
HpaII CCGG 1 cut(s) 92
HphI GGTGA 2 cut(s) 659, 851
Hpy166II GTNNAC 2 cut(s) 317, 514
Hpy188I TCNGA 3 cut(s) 154, 184, 739
Hpy188III TCNNGA 3 cut(s) 92, 353, 566
Hpy8I GTNNAC 2 cut(s) 317, 514
HpyAV CCTTC 2 cut(s) 75, 583
HpyCH4III ACNGT 3 cut(s) 262, 444, 471
HpyCH4V TGCA 7 cut(s) 36, 284, 428, 447, 597, 630, 797
HpyF10VI GCNNNNNNNGC 3 cut(s) 168, 444, 668
HpyF3I CTNAG 2 cut(s) 517, 539
Hsp92II CATG 2 cut(s) 45, 140
HspAI GCGC 2 cut(s) 535, 712
Kpn2I TCCGGA 1 cut(s) 91
Kzo9I GATC 3 cut(s) 349, 562, 701
Lsp1109I GCAGC 2 cut(s) 389, 411
LweI GCATC 1 cut(s) 277
MalI GATC 3 cut(s) 351, 564, 703
MboI GATC 3 cut(s) 349, 562, 701
MboII GAAGA 4 cut(s) 353, 506, 776, 860
MfeI CAATTG 1 cut(s) 507
MflI RGATCY 1 cut(s) 701
MhlI GDGCHC 1 cut(s) 296
MluCI AATT 9 cut(s) 95, 119, 155, 410, 483, 507, 686, 719, 740
MlyI GAGTC 1 cut(s) 14
MnlI CCTC 9 cut(s) 490, 544, 610, 637, 691, 793, 811, 823, 829
MroI TCCGGA 1 cut(s) 91
MroXI GAANNNNTTC 1 cut(s) 744
MseI TTAA 3 cut(s) 464, 531, 758
MslI CAYNNNNRTG 1 cut(s) 779
MspA1I CMGCKG 1 cut(s) 402
MspI CCGG 1 cut(s) 92
MspR9I CCNGG 2 cut(s) 105, 249
MunI CAATTG 1 cut(s) 507
MvaI CCWGG 2 cut(s) 105, 249
MwoI GCNNNNNNNGC 3 cut(s) 168, 444, 668
NdeII GATC 3 cut(s) 349, 562, 701
NlaIII CATG 2 cut(s) 45, 140
PdmI GAANNNNTTC 1 cut(s) 744
PfeI GAWTC 3 cut(s) 252, 356, 767
PkrI GCNGC 2 cut(s) 401, 404
Ple19I CGATCG 1 cut(s) 565
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PsiI TTATAA 1 cut(s) 197
Psp6I CCWGG 2 cut(s) 103, 247
PspGI CCWGG 2 cut(s) 103, 247
PsuI RGATCY 1 cut(s) 701
PvuI CGATCG 1 cut(s) 565
PvuII CAGCTG 1 cut(s) 402
RsaI GTAC 1 cut(s) 377
RsaNI GTAC 1 cut(s) 376
RseI CAYNNNNRTG 1 cut(s) 779
SaqAI TTAA 3 cut(s) 464, 531, 758
SatI GCNGC 2 cut(s) 400, 403
Sau3AI GATC 3 cut(s) 349, 562, 701
ScaI AGTACT 1 cut(s) 377
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 2 cut(s) 105, 249
SduI GDGCHC 1 cut(s) 296
SfaNI GCATC 1 cut(s) 277
SmiMI CAYNNNNRTG 1 cut(s) 779
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
Sse9I AATT 9 cut(s) 95, 119, 155, 410, 483, 507, 686, 719, 740
StyD4I CCNGG 2 cut(s) 103, 247
StyI CCWWGG 2 cut(s) 220, 621
TaaI ACNGT 3 cut(s) 262, 444, 471
TaqI TCGA 4 cut(s) 348, 354, 359, 561
TasI AATT 9 cut(s) 95, 119, 155, 410, 483, 507, 686, 719, 740
TatI WGTACW 1 cut(s) 375
TfiI GAWTC 3 cut(s) 252, 356, 767
Tru1I TTAA 3 cut(s) 464, 531, 758
Tru9I TTAA 3 cut(s) 464, 531, 758
TscAI CASTG 1 cut(s) 474
TseI GCWGC 2 cut(s) 399, 402
TspDTI ATGAA 4 cut(s) 132, 153, 669, 741
TspGWI ACGGA 1 cut(s) 776
TspRI CASTG 1 cut(s) 474
XapI RAATTY 6 cut(s) 95, 119, 155, 686, 719, 740
XmnI GAANNNNTTC 1 cut(s) 744
ZrmI AGTACT 1 cut(s) 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.