Prupe.1G012400_v2.0.a1

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000637
Physical Location & Seq
Forward (+)
948387 .. 949533
1147 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G012400.1

Sequence Viewer

Length: 876 bp
ATGGACTGCTTGGTGAAAATGTTGGAGAAAGTTGGAATGGAGTCAGTGCTTTTGGATGTCCCTTTTGTGTGCAAGTCATGGTACAAAGTGACCCTCAATCCTTCATGCTGGCAATCTCTCATTTTCCCGGACAATGAATGTATTGAAGTCTGGCCTTGGGTTGTGTCTGAGTGTCCAAATTTTCAAAATCTTATGGACAGATTTGTGAGTGAGTTTCAAATTGATGGGGATCGTTTCTCTGTCACCACTTTTTTAAAGTTTGTGATCAATCGGAGCAGCAGAACTGCTGTTCTGCTTAAGCTTCCCAAATGCTGCACAGTAGAGACCTTTGTATTTGTTGCAAATGTGTGTCCTGGCCTTGTGACTTTGGGTTTACCCCTAAGATTATTGGAGAGTGAACACACGAACCCAGATCTGATTAGCAAGTGGAAAAATTTGGAGGTGGTGTCATTGGGTTCAAGCTTAAATTTGGTGATAATACTTGCCCTTATAAAAACACACTGCAAGAATATTTACGGTTTAGATTTGGCCATGACCTTAATTCGTGAACGTGAGGCATTGGCAATTGTCAAGTTGGTGCCTAATATCAAGTACCTAAACTTGAAAGGTACAATCGTTAGTCGGGATAGCCTTGTCACATTGCTGCGCGGCTGCAAAGATCTTGTGGTGTTGGACGTCAGGGATTGTATTGGTGTTGATGAGAATCATGATGAAATATTAAAGTTTGCGTCTCATTTTAGTAAATTTATGTGTGGGGGTTCTGTTTTTCCGGAATTTCTTCGTAGGTGGTTTTCTACGGATGATTTGGTTTGTAAAATAGGTTCAATCCCCTTCGATGTGGGCATGTTCAGTAAATTTGAAGATGATGAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

292

Amino Acids

33.06

Weight (kDa)

5.39

Isoelectric Point (pI)

40.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000637)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13771 FvH4_4g13861 FvH4_4g13862 FvH4_4g13890 FvH4_4g13890 FvH4_4g13890 FvH4_4g13901
malus_domestica MD04G1010000.v1.1
prunus_persica Prupe.1G009600_v2.0.a1 Prupe.1G010100_v2.0.a1 Prupe.1G012400_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G157400_v2.0.a1 Prupe.1G157500_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.2G138900_v2.0.a1 Prupe.6G053000_v2.0.a1
pyrus_communis pycom04g00810
rosa_chinensis RchiOBHm_Chr4g0414621 RchiOBHm_Chr4g0414631 RchiOBHm_Chr4g0414641 RchiOBHm_Chr4g0415011 RchiOBHm_Chr4g0415031
rosa_laevigata RLG00000008101 RLG00000008104 RLG00000008138 RLG00000008139 RLG00000008140 RLG00000008354
rosa_multiflora Rmu_co8247483.1_g000001 Rmu_sc0003611.1_g000009 Rmu_sc0003611.1_g000014 Rmu_sc0007034.1_g000033 Rmu_sc0007391.1_g000006 Rmu_sc0011778.1_g000017 Rmu_sc0016172.1_g000002
rosa_roxburghii Rroxscaffold_5G00358400 Rroxscaffold_5G00358430 Rroxscaffold_5G00358610 Rroxscaffold_5G00358740 Rroxscaffold_5G00358750 Rroxscaffold_5G00358770
rosa_rugosa Rorug04G0108700 Rorug04G0128400 Rorug04G0128500 Rorug04G0128900 Rorug04G0129000 Rorug04G0129100 Rorug04G0131400 Rorug04G0131500 Rorug04G0131600 Rorug04G0131800 Rorug04G0131900
rosa_samantha Rh4AG187100 Rh4AG187200 Rh4AG190700 Rh4AG191200 Rh4BG185800 Rh4BG186100 Rh4BG188700 Rh4BG188900 Rh4BG189300 Rh4CG199200 Rh4CG199700 Rh4CG201900 Rh4CG202100 Rh4DG185400 Rh4DG185700 Rh4DG189300 Rh4DG189700 Rh6CG237600
rosa_wichuraiana Rw4G015970 Rw4G016000 Rw4G016240 Rw4G016260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 491
AatII GACGTC 1 cut(s) 678
AccB1I GGYRCC 1 cut(s) 577
AccII CGCG 1 cut(s) 648
AccIII TCCGGA 1 cut(s) 769
AciI CCGC 1 cut(s) 648
AclWI GGATC 1 cut(s) 237
AcoI YGGCCR 1 cut(s) 528
AcsI RAATTY 6 cut(s) 178, 433, 466, 743, 773, 854
AcyI GRCGYC 1 cut(s) 675
AfaI GTAC 3 cut(s) 83, 593, 610
AflII CTTAAG 1 cut(s) 296
AgsI TTSAA 7 cut(s) 146, 185, 218, 459, 604, 825, 860
AjnI CCWGG 1 cut(s) 352
AluBI AGCT 2 cut(s) 301, 462
AluI AGCT 2 cut(s) 301, 462
Alw26I GTCTC 2 cut(s) 317, 735
AlwI GGATC 1 cut(s) 237
Aor13HI TCCGGA 1 cut(s) 769
AoxI GGCC 3 cut(s) 152, 355, 528
ApeKI GCWGC 4 cut(s) 276, 312, 643, 651
ApoI RAATTY 6 cut(s) 178, 433, 466, 743, 773, 854
Asp700I GAANNNNTTC 1 cut(s) 777
AspLEI GCGC 1 cut(s) 648
AsuC2I CCSGG 1 cut(s) 128
AsuHPI GGTGA 3 cut(s) 25, 235, 484
BaeI ACNNNNGTAYC 2 cut(s) 600, 633
BalI TGGCCA 1 cut(s) 530
BanI GGYRCC 1 cut(s) 577
BbvI GCAGC 4 cut(s) 288, 299, 630, 638
BccI CCATC 1 cut(s) 218
BciT130I CCWGG 1 cut(s) 354
BclI TGATCA 1 cut(s) 264
BcnI CCSGG 1 cut(s) 128
BcoDI GTCTC 2 cut(s) 317, 735
BfrI CTTAAG 1 cut(s) 296
BglII AGATCT 2 cut(s) 412, 658
BisI GCNGC 5 cut(s) 277, 313, 644, 649, 652
BlsI GCNGC 5 cut(s) 278, 314, 645, 650, 653
Bme1390I CCNGG 2 cut(s) 128, 354
BmiI GGNNCC 1 cut(s) 579
BmrFI CCNGG 2 cut(s) 128, 354
BpuMI CCSGG 1 cut(s) 128
BsaBI GATNNNNATC 2 cut(s) 228, 702
BsaHI GRCGYC 1 cut(s) 675
BsaI GGTCTC 1 cut(s) 317
BsaJI CCNNGG 1 cut(s) 155
BsaWI WCCGGW 1 cut(s) 769
BsaXI ACNNNNNCTCC 2 cut(s) 431, 461
Bse3DI GCAATG 1 cut(s) 638
Bse8I GATNNNNATC 2 cut(s) 228, 702
BseAI TCCGGA 1 cut(s) 769
BseBI CCWGG 1 cut(s) 354
BseDI CCNNGG 1 cut(s) 155
BseGI GGATG 2 cut(s) 61, 805
BseJI GATNNNNATC 2 cut(s) 228, 702
BseMI GCAATG 1 cut(s) 638
BseMII CTCAG 1 cut(s) 159
BseXI GCAGC 4 cut(s) 288, 299, 630, 638
BsgI GTGCAG 1 cut(s) 298
Bsh1236I CGCG 1 cut(s) 648
BshFI GGCC 3 cut(s) 154, 357, 530
BshNI GGYRCC 1 cut(s) 577
BsiSI CCGG 2 cut(s) 128, 770
BslFI GGGAC 1 cut(s) 44
BsmAI GTCTC 2 cut(s) 317, 735
BsmBI CGTCTC 1 cut(s) 735
BsmFI GGGAC 1 cut(s) 44
BsnI GGCC 3 cut(s) 154, 357, 530
Bso31I GGTCTC 1 cut(s) 317
Bsp13I TCCGGA 1 cut(s) 769
Bsp143I GATC 4 cut(s) 229, 264, 412, 658
BspACI CCGC 1 cut(s) 648
BspANI GGCC 3 cut(s) 154, 357, 530
BspCNI CTCAG 1 cut(s) 160
BspEI TCCGGA 1 cut(s) 769
BspFNI CGCG 1 cut(s) 648
BspHI TCATGA 1 cut(s) 706
BspLI GGNNCC 1 cut(s) 579
BspPI GGATC 1 cut(s) 237
BspT107I GGYRCC 1 cut(s) 577
BspTI CTTAAG 1 cut(s) 296
BspTNI GGTCTC 1 cut(s) 317
BsrDI GCAATG 1 cut(s) 638
BssECI CCNNGG 1 cut(s) 155
BssMI GATC 4 cut(s) 229, 264, 412, 658
BssNI GRCGYC 1 cut(s) 675
BssT1I CCWWGG 1 cut(s) 155
Bst2UI CCWGG 1 cut(s) 354
Bst4CI ACNGT 2 cut(s) 319, 518
BstACI GRCGYC 1 cut(s) 675
BstAFI CTTAAG 1 cut(s) 296
BstC8I GCNNGC 1 cut(s) 110
BstDEI CTNAG 2 cut(s) 168, 380
BstF5I GGATG 2 cut(s) 61, 805
BstFNI CGCG 1 cut(s) 648
BstHHI GCGC 1 cut(s) 648
BstKTI GATC 4 cut(s) 232, 267, 415, 661
BstMAI GTCTC 2 cut(s) 317, 735
BstMBI GATC 4 cut(s) 229, 264, 412, 658
BstNI CCWGG 1 cut(s) 354
BstNSI RCATGY 1 cut(s) 847
BstSCI CCNGG 2 cut(s) 126, 352
BstUI CGCG 1 cut(s) 648
BstV1I GCAGC 4 cut(s) 288, 299, 630, 638
BstX2I RGATCY 2 cut(s) 412, 658
BstYI RGATCY 2 cut(s) 412, 658
BsuRI GGCC 3 cut(s) 154, 357, 530
BtsCI GGATG 2 cut(s) 61, 805
BtsI GCAGTG 1 cut(s) 499
BtsIMutI CAGTG 2 cut(s) 51, 499
Cac8I GCNNGC 1 cut(s) 110
CciI TCATGA 1 cut(s) 706
CfoI GCGC 1 cut(s) 648
CseI GACGC 1 cut(s) 717
Csp6I GTAC 3 cut(s) 82, 592, 609
CviAII CATG 5 cut(s) 78, 105, 532, 707, 844
CviJI RGCY 7 cut(s) 154, 301, 357, 462, 530, 630, 651
CviKI_1 RGCY 7 cut(s) 154, 301, 357, 462, 530, 630, 651
CviQI GTAC 3 cut(s) 82, 592, 609
DdeI CTNAG 2 cut(s) 168, 380
DpnI GATC 4 cut(s) 231, 266, 414, 660
DpnII GATC 4 cut(s) 229, 264, 412, 658
DraI TTTAAA 1 cut(s) 255
EaeI YGGCCR 1 cut(s) 528
Eco130I CCWWGG 1 cut(s) 155
Eco31I GGTCTC 1 cut(s) 317
EcoRII CCWGG 1 cut(s) 352
EcoT14I CCWWGG 1 cut(s) 155
ErhI CCWWGG 1 cut(s) 155
Esp3I CGTCTC 1 cut(s) 735
FaeI CATG 5 cut(s) 81, 108, 535, 710, 847
FaiI YATR 8 cut(s) 79, 106, 194, 491, 533, 708, 749, 845
FaqI GGGAC 1 cut(s) 44
FatI CATG 5 cut(s) 77, 104, 531, 706, 843
FbaI TGATCA 1 cut(s) 264
Fnu4HI GCNGC 5 cut(s) 277, 313, 644, 649, 652
FokI GGATG 2 cut(s) 68, 812
Fsp4HI GCNGC 5 cut(s) 277, 313, 644, 649, 652
GlaI GCGC 1 cut(s) 647
GluI GCNGC 5 cut(s) 277, 313, 644, 649, 652
HaeIII GGCC 3 cut(s) 154, 357, 530
HapII CCGG 2 cut(s) 128, 770
HgaI GACGC 1 cut(s) 717
HhaI GCGC 1 cut(s) 648
Hin1I GRCGYC 1 cut(s) 675
Hin1II CATG 5 cut(s) 81, 108, 535, 710, 847
Hin6I GCGC 1 cut(s) 646
HinP1I GCGC 1 cut(s) 646
HindIII AAGCTT 2 cut(s) 299, 460
HinfI GANTC 2 cut(s) 41, 703
HpaII CCGG 2 cut(s) 128, 770
HphI GGTGA 3 cut(s) 25, 235, 484
Hpy166II GTNNAC 3 cut(s) 374, 398, 548
Hpy188I TCNGA 3 cut(s) 169, 273, 417
Hpy188III TCNNGA 4 cut(s) 545, 623, 707, 770
Hpy8I GTNNAC 3 cut(s) 374, 398, 548
HpyAV CCTTC 2 cut(s) 111, 841
HpyCH4III ACNGT 2 cut(s) 319, 518
HpyCH4IV ACGT 2 cut(s) 550, 675
HpyCH4V TGCA 5 cut(s) 72, 315, 341, 504, 654
HpyF3I CTNAG 2 cut(s) 168, 380
HpySE526I ACGT 2 cut(s) 550, 675
Hsp92I GRCGYC 1 cut(s) 675
Hsp92II CATG 5 cut(s) 81, 108, 535, 710, 847
HspAI GCGC 1 cut(s) 646
Kpn2I TCCGGA 1 cut(s) 769
Ksp22I TGATCA 1 cut(s) 264
Kzo9I GATC 4 cut(s) 229, 264, 412, 658
LmnI GCTCC 1 cut(s) 273
LpnPI CCDG 8 cut(s) 94, 136, 141, 339, 366, 423, 664, 783
Lsp1109I GCAGC 4 cut(s) 288, 299, 630, 638
MaeII ACGT 2 cut(s) 550, 675
MaeIII GTNAC 4 cut(s) 88, 241, 361, 634
MalI GATC 4 cut(s) 231, 266, 414, 660
MboI GATC 4 cut(s) 229, 264, 412, 658
MboII GAAGA 2 cut(s) 770, 872
MfeI CAATTG 1 cut(s) 564
MflI RGATCY 2 cut(s) 412, 658
MlsI TGGCCA 1 cut(s) 530
MluCI AATT 9 cut(s) 178, 219, 433, 466, 540, 564, 743, 773, 854
MluNI TGGCCA 1 cut(s) 530
MlyI GAGTC 1 cut(s) 50
MmeI TCCRAC 2 cut(s) 13, 651
MnlI CCTC 4 cut(s) 104, 433, 547, 862
Mox20I TGGCCA 1 cut(s) 530
MroI TCCGGA 1 cut(s) 769
MroXI GAANNNNTTC 1 cut(s) 777
MscI TGGCCA 1 cut(s) 530
MseI TTAA 5 cut(s) 254, 297, 464, 539, 719
Msp20I TGGCCA 1 cut(s) 530
MspCI CTTAAG 1 cut(s) 296
MspI CCGG 2 cut(s) 128, 770
MspR9I CCNGG 2 cut(s) 128, 354
MunI CAATTG 1 cut(s) 564
MvaI CCWGG 1 cut(s) 354
MvnI CGCG 1 cut(s) 648
NciI CCSGG 1 cut(s) 128
NdeII GATC 4 cut(s) 229, 264, 412, 658
NlaIII CATG 5 cut(s) 81, 108, 535, 710, 847
NlaIV GGNNCC 1 cut(s) 579
NmuCI GTSAC 4 cut(s) 88, 241, 361, 634
NspI RCATGY 1 cut(s) 847
PagI TCATGA 1 cut(s) 706
PdmI GAANNNNTTC 1 cut(s) 777
PfeI GAWTC 1 cut(s) 703
PfoI TCCNGGA 1 cut(s) 126
PkrI GCNGC 5 cut(s) 278, 314, 645, 650, 653
PleI GAGTC 1 cut(s) 49
PpsI GAGTC 1 cut(s) 49
PsiI TTATAA 1 cut(s) 491
Psp6I CCWGG 1 cut(s) 352
PspGI CCWGG 1 cut(s) 352
PspN4I GGNNCC 1 cut(s) 579
PsrI GAACNNNNNNTAC 2 cut(s) 805, 837
PsuI RGATCY 2 cut(s) 412, 658
RsaI GTAC 3 cut(s) 83, 593, 610
RsaNI GTAC 3 cut(s) 82, 592, 609
SaqAI TTAA 5 cut(s) 254, 297, 464, 539, 719
SatI GCNGC 5 cut(s) 277, 313, 644, 649, 652
Sau3AI GATC 4 cut(s) 229, 264, 412, 658
SchI GAGTC 1 cut(s) 50
ScrFI CCNGG 2 cut(s) 128, 354
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
Sse9I AATT 9 cut(s) 178, 219, 433, 466, 540, 564, 743, 773, 854
SsiI CCGC 1 cut(s) 648
SspI AATATT 2 cut(s) 511, 717
StyD4I CCNGG 2 cut(s) 126, 352
StyI CCWWGG 1 cut(s) 155
TaaI ACNGT 2 cut(s) 319, 518
TaiI ACGT 2 cut(s) 553, 678
TaqI TCGA 1 cut(s) 834
TasI AATT 9 cut(s) 178, 219, 433, 466, 540, 564, 743, 773, 854
TauI GCSGC 1 cut(s) 651
TfiI GAWTC 1 cut(s) 703
Tru1I TTAA 5 cut(s) 254, 297, 464, 539, 719
Tru9I TTAA 5 cut(s) 254, 297, 464, 539, 719
TscAI CASTG 2 cut(s) 51, 506
TseFI GTSAC 4 cut(s) 88, 241, 361, 634
TseI GCWGC 4 cut(s) 276, 312, 643, 651
Tsp45I GTSAC 4 cut(s) 88, 241, 361, 634
TspDTI ATGAA 3 cut(s) 93, 150, 726
TspGWI ACGGA 1 cut(s) 812
TspRI CASTG 2 cut(s) 51, 506
Vha464I CTTAAG 1 cut(s) 296
XapI RAATTY 6 cut(s) 178, 433, 466, 743, 773, 854
XceI RCATGY 1 cut(s) 847
XmnI GAANNNNTTC 1 cut(s) 777
ZraI GACGTC 1 cut(s) 676
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.