RLG00000008101

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000637
Physical Location & Seq
Reverse (-)
25606407 .. 25609483
3077 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008101

Sequence Viewer

Length: 981 bp
ATGAAAGCCCGGAGCTCTTCCAACCGAACCAAGGGACGAAAGCAGCAGATGGATCAACGAAGATGGGAGGACTTAGATAAGGACTGTTTGGTGAAAGTGTTTGAGAAAGTTGATATGGAGTCGCGACTCTTGGATATTCCTTTTGTGTGCAAGTCATGGCACAAAGAAACACTAAATCCTTCTTGCTGGAAAAATCTTATCTTTCCGGAATTTGGACATGAATTTCCTTATGAATTTGATTATCCAATCCATGAAAGATTTGTTTCTGAATTTGGCCTTGATAGGAATCGTGTCTCCGAAACTGCCTTTATAAAGTTTGTTGTCAATCGTAGCCAAGGAAAGGCTGTTTTTCTCAAGCTACCTGGATTCTCTACCGTAGAAGCCTTTGAATATGTTGCAGATGCGTGCCCTAACCTTGTGATTTTGGATTTACCAAGATGTTTGTTGTGGAAAGAAGACATCGATCTCGAATCGATTGGCAAGTTCAAGTACTTGTATGTGTTGTCATTGGGCAGCTGCGATAAATTGGACAGAGTTCTTGCAGTAGTCAGCAAACAGTGCAAGTTGTTTTCTCATTTAACACTGTCTGATGCCCAAATTGGTAAAGAAGAGGTTATGGCAATTGTCAACTTAGTCCCTGATATTAAGCGCCTGAGCTTGAATGAGGCACAAATCGATCGGGATAATCTCATCATATTACTGAAGGGTTGCAAAAAACTTTCGTTCTTGGAGGCCAAGGATTGCATTGGTTTCAATGAGGGTGATGATGAAATAGCAGAGCTGGCTTCTCATATCAGTAAATTTCACTGTGAGGGATCTGTAGAGCGCATTGAATTTTCATTTGATTTTTCTGAACTTCTTTCTTCATTATTAACGGAAGATTCTGTCATAGAAATGGCTTCAATGCTTGCAGAGGTTGATGTAGAGGCAGAGGTTGATGGCGAGGGAGAGGGTGATATTGAAGAAAGTGTTGAACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

327

Amino Acids

37.23

Weight (kDa)

4.78

Isoelectric Point (pI)

44.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000637)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13771 FvH4_4g13861 FvH4_4g13862 FvH4_4g13890 FvH4_4g13890 FvH4_4g13890 FvH4_4g13901
malus_domestica MD04G1010000.v1.1
prunus_persica Prupe.1G009600_v2.0.a1 Prupe.1G010100_v2.0.a1 Prupe.1G012400_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G157400_v2.0.a1 Prupe.1G157500_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.2G138900_v2.0.a1 Prupe.6G053000_v2.0.a1
pyrus_communis pycom04g00810
rosa_chinensis RchiOBHm_Chr4g0414621 RchiOBHm_Chr4g0414631 RchiOBHm_Chr4g0414641 RchiOBHm_Chr4g0415011 RchiOBHm_Chr4g0415031
rosa_laevigata RLG00000008101 RLG00000008104 RLG00000008138 RLG00000008139 RLG00000008140 RLG00000008354
rosa_multiflora Rmu_co8247483.1_g000001 Rmu_sc0003611.1_g000009 Rmu_sc0003611.1_g000014 Rmu_sc0007034.1_g000033 Rmu_sc0007391.1_g000006 Rmu_sc0011778.1_g000017 Rmu_sc0016172.1_g000002
rosa_roxburghii Rroxscaffold_5G00358400 Rroxscaffold_5G00358430 Rroxscaffold_5G00358610 Rroxscaffold_5G00358740 Rroxscaffold_5G00358750 Rroxscaffold_5G00358770
rosa_rugosa Rorug04G0108700 Rorug04G0128400 Rorug04G0128500 Rorug04G0128900 Rorug04G0129000 Rorug04G0129100 Rorug04G0131400 Rorug04G0131500 Rorug04G0131600 Rorug04G0131800 Rorug04G0131900
rosa_samantha Rh4AG187100 Rh4AG187200 Rh4AG190700 Rh4AG191200 Rh4BG185800 Rh4BG186100 Rh4BG188700 Rh4BG188900 Rh4BG189300 Rh4CG199200 Rh4CG199700 Rh4CG201900 Rh4CG202100 Rh4DG185400 Rh4DG185700 Rh4DG189300 Rh4DG189700 Rh6CG237600
rosa_wichuraiana Rw4G015970 Rw4G016000 Rw4G016240 Rw4G016260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 311
AccII CGCG 1 cut(s) 124
AccIII TCCGGA 1 cut(s) 205
AclWI GGATC 2 cut(s) 60, 823
AcsI RAATTY 6 cut(s) 209, 221, 233, 269, 800, 833
AcuI CTGAAG 1 cut(s) 722
AfaI GTAC 1 cut(s) 491
AfiI CCNNNNNNNGG 3 cut(s) 31, 212, 340
AgsI TTSAA 8 cut(s) 389, 487, 661, 754, 833, 903, 962, 974
AjnI CCWGG 1 cut(s) 361
AluBI AGCT 5 cut(s) 15, 358, 516, 657, 781
AluI AGCT 5 cut(s) 15, 358, 516, 657, 781
Alw21I GWGCWC 1 cut(s) 17
Alw26I GTCTC 1 cut(s) 298
AlwI GGATC 2 cut(s) 60, 823
Aor13HI TCCGGA 1 cut(s) 205
AoxI GGCC 2 cut(s) 274, 732
ApeKI GCWGC 3 cut(s) 43, 513, 516
ApoI RAATTY 6 cut(s) 209, 221, 233, 269, 800, 833
AspLEI GCGC 2 cut(s) 651, 828
AsuC2I CCSGG 1 cut(s) 10
AsuHPI GGTGA 3 cut(s) 103, 773, 965
BaeGI GKGCMC 1 cut(s) 410
BanII GRGCYC 1 cut(s) 17
BbsI GAAGAC 1 cut(s) 462
Bbv12I GWGCWC 1 cut(s) 17
BbvI GCAGC 3 cut(s) 55, 503, 525
BccI CCATC 3 cut(s) 43, 57, 932
BciT130I CCWGG 1 cut(s) 363
BcnI CCSGG 1 cut(s) 10
BcoDI GTCTC 1 cut(s) 298
BfmI CTRYAG 1 cut(s) 819
BfoI RGCGCY 1 cut(s) 652
BisI GCNGC 3 cut(s) 44, 514, 517
BlsI GCNGC 3 cut(s) 45, 515, 518
BmcAI AGTACT 1 cut(s) 491
Bme1390I CCNGG 2 cut(s) 10, 363
BmrFI CCNGG 2 cut(s) 10, 363
BmsI GCATC 2 cut(s) 391, 580
BpiI GAAGAC 1 cut(s) 462
Bpu10I CCTNAGC 1 cut(s) 653
BpuEI CTTGAG 1 cut(s) 338
BpuMI CCSGG 1 cut(s) 10
Bsa29I ATCGAT 3 cut(s) 462, 473, 675
BsaBI GATNNNNATC 1 cut(s) 285
BsaJI CCNNGG 3 cut(s) 30, 334, 735
BsaWI WCCGGW 1 cut(s) 205
Bsc4I CCNNNNNNNGG 3 cut(s) 31, 212, 340
Bse8I GATNNNNATC 1 cut(s) 285
BseAI TCCGGA 1 cut(s) 205
BseBI CCWGG 1 cut(s) 363
BseCI ATCGAT 3 cut(s) 462, 473, 675
BseDI CCNNGG 3 cut(s) 30, 334, 735
BseJI GATNNNNATC 1 cut(s) 285
BseLI CCNNNNNNNGG 3 cut(s) 31, 212, 340
BseMII CTCAG 1 cut(s) 644
BseSI GKGCMC 1 cut(s) 410
BseXI GCAGC 3 cut(s) 55, 503, 525
Bsh1236I CGCG 1 cut(s) 124
Bsh1285I CGRYCG 1 cut(s) 679
BshFI GGCC 2 cut(s) 276, 734
BshVI ATCGAT 3 cut(s) 462, 473, 675
BsiEI CGRYCG 1 cut(s) 679
BsiHKAI GWGCWC 1 cut(s) 17
BsiSI CCGG 2 cut(s) 10, 206
BslFI GGGAC 2 cut(s) 48, 620
BslI CCNNNNNNNGG 3 cut(s) 31, 212, 340
BsmAI GTCTC 1 cut(s) 298
BsmFI GGGAC 2 cut(s) 48, 620
BsnI GGCC 2 cut(s) 276, 734
Bsp1286I GDGCHC 2 cut(s) 17, 410
Bsp13I TCCGGA 1 cut(s) 205
Bsp143I GATC 4 cut(s) 52, 463, 676, 815
Bsp68I TCGCGA 1 cut(s) 124
BspANI GGCC 2 cut(s) 276, 734
BspCNI CTCAG 1 cut(s) 645
BspDI ATCGAT 3 cut(s) 462, 473, 675
BspEI TCCGGA 1 cut(s) 205
BspFNI CGCG 1 cut(s) 124
BspPI GGATC 2 cut(s) 60, 823
BspQI GCTCTTC 1 cut(s) 22
BssECI CCNNGG 3 cut(s) 30, 334, 735
BssMI GATC 4 cut(s) 52, 463, 676, 815
BssT1I CCWWGG 3 cut(s) 30, 334, 735
Bst2UI CCWGG 1 cut(s) 363
Bst4CI ACNGT 5 cut(s) 86, 376, 558, 585, 809
Bst6I CTCTTC 2 cut(s) 22, 603
BstAPI GCANNNNNTGC 1 cut(s) 558
BstC8I GCNNGC 3 cut(s) 406, 783, 909
BstDEI CTNAG 3 cut(s) 73, 631, 653
BstFNI CGCG 1 cut(s) 124
BstH2I RGCGCY 1 cut(s) 652
BstHHI GCGC 2 cut(s) 651, 828
BstKTI GATC 4 cut(s) 55, 466, 679, 818
BstMAI GTCTC 1 cut(s) 298
BstMBI GATC 4 cut(s) 52, 463, 676, 815
BstMCI CGRYCG 1 cut(s) 679
BstMWI GCNNNNNNNGC 2 cut(s) 558, 782
BstNI CCWGG 1 cut(s) 363
BstSCI CCNGG 2 cut(s) 8, 361
BstSFI CTRYAG 1 cut(s) 819
BstSLI GKGCMC 1 cut(s) 410
BstUI CGCG 1 cut(s) 124
BstV1I GCAGC 3 cut(s) 55, 503, 525
BstV2I GAAGAC 1 cut(s) 462
BstX2I RGATCY 1 cut(s) 815
BstYI RGATCY 1 cut(s) 815
Bsu15I ATCGAT 3 cut(s) 462, 473, 675
BsuRI GGCC 2 cut(s) 276, 734
BsuTUI ATCGAT 3 cut(s) 462, 473, 675
BtsIMutI CAGTG 3 cut(s) 563, 581, 805
BtuMI TCGCGA 1 cut(s) 124
Cac8I GCNNGC 3 cut(s) 406, 783, 909
CfoI GCGC 2 cut(s) 651, 828
ClaI ATCGAT 3 cut(s) 462, 473, 675
Csp6I GTAC 1 cut(s) 490
CviAII CATG 3 cut(s) 156, 218, 251
CviQI GTAC 1 cut(s) 490
DdeI CTNAG 3 cut(s) 73, 631, 653
DpnI GATC 4 cut(s) 54, 465, 678, 817
DpnII GATC 4 cut(s) 52, 463, 676, 815
Eam1104I CTCTTC 2 cut(s) 22, 603
EarI CTCTTC 2 cut(s) 22, 603
Ecl136II GAGCTC 1 cut(s) 15
Eco130I CCWWGG 3 cut(s) 30, 334, 735
Eco24I GRGCYC 1 cut(s) 17
Eco53kI GAGCTC 1 cut(s) 15
Eco57I CTGAAG 1 cut(s) 722
EcoICRI GAGCTC 1 cut(s) 15
EcoRII CCWGG 1 cut(s) 361
EcoT14I CCWWGG 3 cut(s) 30, 334, 735
EcoT38I GRGCYC 1 cut(s) 17
ErhI CCWWGG 3 cut(s) 30, 334, 735
FaeI CATG 3 cut(s) 159, 221, 254
FaqI GGGAC 2 cut(s) 48, 620
FatI CATG 3 cut(s) 155, 217, 250
Fnu4HI GCNGC 3 cut(s) 44, 514, 517
FriOI GRGCYC 1 cut(s) 17
Fsp4HI GCNGC 3 cut(s) 44, 514, 517
GlaI GCGC 2 cut(s) 650, 827
GluI GCNGC 3 cut(s) 44, 514, 517
HaeII RGCGCY 1 cut(s) 652
HaeIII GGCC 2 cut(s) 276, 734
HapII CCGG 2 cut(s) 10, 206
HhaI GCGC 2 cut(s) 651, 828
Hin1II CATG 3 cut(s) 159, 221, 254
Hin6I GCGC 2 cut(s) 649, 826
HinP1I GCGC 2 cut(s) 649, 826
HincII GTYRAC 1 cut(s) 628
HindII GTYRAC 1 cut(s) 628
HinfI GANTC 6 cut(s) 119, 126, 286, 366, 470, 881
HpaII CCGG 2 cut(s) 10, 206
HphI GGTGA 3 cut(s) 103, 773, 965
Hpy166II GTNNAC 1 cut(s) 628
Hpy188I TCNGA 4 cut(s) 268, 298, 589, 853
Hpy188III TCNNGA 4 cut(s) 123, 206, 467, 680
Hpy8I GTNNAC 1 cut(s) 628
HpyAV CCTTC 2 cut(s) 189, 697
HpyCH4III ACNGT 5 cut(s) 86, 376, 558, 585, 809
HpyCH4V TGCA 7 cut(s) 150, 398, 542, 561, 711, 744, 911
HpyF10VI GCNNNNNNNGC 2 cut(s) 558, 782
HpyF3I CTNAG 3 cut(s) 73, 631, 653
Hsp92II CATG 3 cut(s) 159, 221, 254
HspAI GCGC 2 cut(s) 649, 826
Kpn2I TCCGGA 1 cut(s) 205
Kzo9I GATC 4 cut(s) 52, 463, 676, 815
LguI GCTCTTC 1 cut(s) 22
LmnI GCTCC 1 cut(s) 12
LpnPI CCDG 8 cut(s) 23, 172, 219, 348, 375, 651, 665, 767
Lsp1109I GCAGC 3 cut(s) 55, 503, 525
LweI GCATC 2 cut(s) 391, 580
MalI GATC 4 cut(s) 54, 465, 678, 817
MboI GATC 4 cut(s) 52, 463, 676, 815
MboII GAAGA 7 cut(s) 9, 72, 467, 620, 855, 890, 974
MfeI CAATTG 1 cut(s) 621
MflI RGATCY 1 cut(s) 815
MhlI GDGCHC 2 cut(s) 17, 410
MluCI AATT 9 cut(s) 209, 221, 233, 269, 524, 597, 621, 800, 833
MlyI GAGTC 2 cut(s) 120, 128
MmeI TCCRAC 1 cut(s) 45
MroI TCCGGA 1 cut(s) 205
MseI TTAA 3 cut(s) 578, 645, 872
MslI CAYNNNNRTG 1 cut(s) 893
MspA1I CMGCKG 1 cut(s) 516
MspI CCGG 2 cut(s) 10, 206
MspR9I CCNGG 2 cut(s) 10, 363
MunI CAATTG 1 cut(s) 621
MvaI CCWGG 1 cut(s) 363
MvnI CGCG 1 cut(s) 124
MwoI GCNNNNNNNGC 2 cut(s) 558, 782
NciI CCSGG 1 cut(s) 10
NdeII GATC 4 cut(s) 52, 463, 676, 815
NlaIII CATG 3 cut(s) 159, 221, 254
NruI TCGCGA 1 cut(s) 124
PciSI GCTCTTC 1 cut(s) 22
PfeI GAWTC 4 cut(s) 286, 366, 470, 881
PkrI GCNGC 3 cut(s) 45, 515, 518
Ple19I CGATCG 1 cut(s) 679
PleI GAGTC 2 cut(s) 120, 127
PpsI GAGTC 2 cut(s) 120, 127
PsiI TTATAA 1 cut(s) 311
Psp124BI GAGCTC 1 cut(s) 17
Psp6I CCWGG 1 cut(s) 361
PspGI CCWGG 1 cut(s) 361
PsuI RGATCY 1 cut(s) 815
PvuI CGATCG 1 cut(s) 679
PvuII CAGCTG 1 cut(s) 516
RruI TCGCGA 1 cut(s) 124
RsaI GTAC 1 cut(s) 491
RsaNI GTAC 1 cut(s) 490
RseI CAYNNNNRTG 1 cut(s) 893
SacI GAGCTC 1 cut(s) 17
SapI GCTCTTC 1 cut(s) 22
SaqAI TTAA 3 cut(s) 578, 645, 872
SatI GCNGC 3 cut(s) 44, 514, 517
Sau3AI GATC 4 cut(s) 52, 463, 676, 815
ScaI AGTACT 1 cut(s) 491
SchI GAGTC 2 cut(s) 120, 128
ScrFI CCNGG 2 cut(s) 10, 363
SduI GDGCHC 2 cut(s) 17, 410
SfaNI GCATC 2 cut(s) 391, 580
SfcI CTRYAG 1 cut(s) 819
SmiMI CAYNNNNRTG 1 cut(s) 893
SmlI CTYRAG 1 cut(s) 353
SmoI CTYRAG 1 cut(s) 353
Sse9I AATT 9 cut(s) 209, 221, 233, 269, 524, 597, 621, 800, 833
SstI GAGCTC 1 cut(s) 17
StyD4I CCNGG 2 cut(s) 8, 361
StyI CCWWGG 3 cut(s) 30, 334, 735
TaaI ACNGT 5 cut(s) 86, 376, 558, 585, 809
TaqI TCGA 4 cut(s) 462, 468, 473, 675
TasI AATT 9 cut(s) 209, 221, 233, 269, 524, 597, 621, 800, 833
TatI WGTACW 1 cut(s) 489
TfiI GAWTC 4 cut(s) 286, 366, 470, 881
Tru1I TTAA 3 cut(s) 578, 645, 872
Tru9I TTAA 3 cut(s) 578, 645, 872
TscAI CASTG 3 cut(s) 563, 588, 812
TseI GCWGC 3 cut(s) 43, 513, 516
TspDTI ATGAA 7 cut(s) 17, 234, 246, 267, 783, 828, 855
TspGWI ACGGA 1 cut(s) 890
TspRI CASTG 3 cut(s) 563, 588, 812
XapI RAATTY 6 cut(s) 209, 221, 233, 269, 800, 833
ZrmI AGTACT 1 cut(s) 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.