Prupe.6G053000_v2.0.a1

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000637
Physical Location & Seq
Reverse (-)
3726122 .. 3727145
1024 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G053000.1

Sequence Viewer

Length: 678 bp
ATGGACTGCTTGGACAAAGTGTTGGAGAAAGTTGGAATGGAATCTGCTTTTGGATGTTCCTTTTGTGTGCAACTTCCCAAATGCTGCACAGTAGAAGCCTTTGAATTTGCTGCAAATGTGTGTCCTGGCCTTGTGACTTTGAGTTTACCAGGAGATTTATTGGATAGCAAACACGCGAACCTAGAGCTGATTGGCAAGTGGAAAACTTTGGAGGTGTTATCATTGGGTTCATGCTTAAATTTGGCGAAAATACTTGCAATTATACAAACACATTGCAAGAATTTTTATGGTTTAGATTTGTCCAGAGGCTCTGTTCATGGACGTGAGGCATTGTCAATAATGAAGTTCGTGCCTAATATCAAGTACTTCAATTTGAAGGGTGCAAAAGTTAATCCGGATGGTCTTGTCACGTTGCTGTGCGGATGCAAAGATCTGGTGATGTTGGATGCTAGAGATTGTTTTGGTTTCAATGAGAACGATGATGAAATATCAAAGCTTGCGTCTCATATTAGTAAATTTATGTGCAAGGGTTTTGAATTTCCTGAATTTCTTTGTGGTATGGACAATTTTGTTCTTCCTGTTGATGGATACTCATTTCATCTGCATGTGGAGGAGACGTGGGATGAAATGCTCAATGATTTGCGCGATGCTTTCAATGATTTGAGTGACGAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

226

Amino Acids

25.04

Weight (kDa)

4.78

Isoelectric Point (pI)

24.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000637)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13771 FvH4_4g13861 FvH4_4g13862 FvH4_4g13890 FvH4_4g13890 FvH4_4g13890 FvH4_4g13901
malus_domestica MD04G1010000.v1.1
prunus_persica Prupe.1G009600_v2.0.a1 Prupe.1G010100_v2.0.a1 Prupe.1G012400_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G157400_v2.0.a1 Prupe.1G157500_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.2G138900_v2.0.a1 Prupe.6G053000_v2.0.a1
pyrus_communis pycom04g00810
rosa_chinensis RchiOBHm_Chr4g0414621 RchiOBHm_Chr4g0414631 RchiOBHm_Chr4g0414641 RchiOBHm_Chr4g0415011 RchiOBHm_Chr4g0415031
rosa_laevigata RLG00000008101 RLG00000008104 RLG00000008138 RLG00000008139 RLG00000008140 RLG00000008354
rosa_multiflora Rmu_co8247483.1_g000001 Rmu_sc0003611.1_g000009 Rmu_sc0003611.1_g000014 Rmu_sc0007034.1_g000033 Rmu_sc0007391.1_g000006 Rmu_sc0011778.1_g000017 Rmu_sc0016172.1_g000002
rosa_roxburghii Rroxscaffold_5G00358400 Rroxscaffold_5G00358430 Rroxscaffold_5G00358610 Rroxscaffold_5G00358740 Rroxscaffold_5G00358750 Rroxscaffold_5G00358770
rosa_rugosa Rorug04G0108700 Rorug04G0128400 Rorug04G0128500 Rorug04G0128900 Rorug04G0129000 Rorug04G0129100 Rorug04G0131400 Rorug04G0131500 Rorug04G0131600 Rorug04G0131800 Rorug04G0131900
rosa_samantha Rh4AG187100 Rh4AG187200 Rh4AG190700 Rh4AG191200 Rh4BG185800 Rh4BG186100 Rh4BG188700 Rh4BG188900 Rh4BG189300 Rh4CG199200 Rh4CG199700 Rh4CG201900 Rh4CG202100 Rh4DG185400 Rh4DG185700 Rh4DG189300 Rh4DG189700 Rh6CG237600
rosa_wichuraiana Rw4G015970 Rw4G016000 Rw4G016240 Rw4G016260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 176, 645
AccIII TCCGGA 1 cut(s) 394
AciI CCGC 1 cut(s) 420
AcsI RAATTY 6 cut(s) 104, 238, 280, 515, 536, 545
AfaI GTAC 1 cut(s) 365
AfiI CCNNNNNNNGG 1 cut(s) 584
AgsI TTSAA 6 cut(s) 104, 370, 376, 469, 536, 655
AjiI CACGTC 2 cut(s) 323, 618
AjnI CCWGG 2 cut(s) 124, 148
AjuI GAANNNNNNNTTGG 2 cut(s) 33, 65
AluBI AGCT 2 cut(s) 187, 496
AluI AGCT 2 cut(s) 187, 496
Alw26I GTCTC 2 cut(s) 507, 608
Aor13HI TCCGGA 1 cut(s) 394
AoxI GGCC 1 cut(s) 127
ApeKI GCWGC 2 cut(s) 84, 110
ApoI RAATTY 6 cut(s) 104, 238, 280, 515, 536, 545
ArsI GACNNNNNNTTYG 2 cut(s) 485, 517
AspLEI GCGC 1 cut(s) 645
AsuHPI GGTGA 1 cut(s) 448
BbvI GCAGC 2 cut(s) 71, 97
BccI CCATC 2 cut(s) 392, 578
BciT130I CCWGG 2 cut(s) 126, 150
BciVI GTATCC 1 cut(s) 581
BcoDI GTCTC 2 cut(s) 507, 608
BfaI CTAG 2 cut(s) 182, 450
BfuI GTATCC 1 cut(s) 581
BglII AGATCT 1 cut(s) 430
BisI GCNGC 2 cut(s) 85, 111
BlsI GCNGC 2 cut(s) 86, 112
BmcAI AGTACT 1 cut(s) 365
Bme1390I CCNGG 2 cut(s) 126, 150
BmgBI CACGTC 2 cut(s) 323, 618
BmrFI CCNGG 2 cut(s) 126, 150
BmsI GCATC 3 cut(s) 413, 436, 637
BsaWI WCCGGW 1 cut(s) 394
BsaXI ACNNNNNCTCC 2 cut(s) 602, 632
Bsc4I CCNNNNNNNGG 1 cut(s) 584
Bse3DI GCAATG 1 cut(s) 271
BseAI TCCGGA 1 cut(s) 394
BseBI CCWGG 2 cut(s) 126, 150
BseGI GGATG 5 cut(s) 59, 403, 428, 451, 628
BseLI CCNNNNNNNGG 1 cut(s) 584
BseMI GCAATG 1 cut(s) 271
BseRI GAGGAG 1 cut(s) 626
BseXI GCAGC 2 cut(s) 71, 97
BsgI GTGCAG 1 cut(s) 70
Bsh1236I CGCG 2 cut(s) 176, 645
BshFI GGCC 1 cut(s) 129
BsiSI CCGG 1 cut(s) 395
BslI CCNNNNNNNGG 1 cut(s) 584
BsmAI GTCTC 2 cut(s) 507, 608
BsmBI CGTCTC 2 cut(s) 507, 608
BsnI GGCC 1 cut(s) 129
Bsp13I TCCGGA 1 cut(s) 394
Bsp143I GATC 1 cut(s) 430
BspACI CCGC 1 cut(s) 420
BspANI GGCC 1 cut(s) 129
BspEI TCCGGA 1 cut(s) 394
BspFNI CGCG 2 cut(s) 176, 645
BsrDI GCAATG 1 cut(s) 271
BssMI GATC 1 cut(s) 430
Bst2UI CCWGG 2 cut(s) 126, 150
Bst4CI ACNGT 1 cut(s) 91
BstC8I GCNNGC 1 cut(s) 498
BstF5I GGATG 5 cut(s) 59, 403, 428, 451, 628
BstFNI CGCG 2 cut(s) 176, 645
BstHHI GCGC 1 cut(s) 645
BstKTI GATC 1 cut(s) 433
BstMAI GTCTC 2 cut(s) 507, 608
BstMBI GATC 1 cut(s) 430
BstNI CCWGG 2 cut(s) 126, 150
BstNSI RCATGY 1 cut(s) 608
BstSCI CCNGG 2 cut(s) 124, 148
BstUI CGCG 2 cut(s) 176, 645
BstV1I GCAGC 2 cut(s) 71, 97
BstX2I RGATCY 1 cut(s) 430
BstYI RGATCY 1 cut(s) 430
BsuI GTATCC 1 cut(s) 581
BsuRI GGCC 1 cut(s) 129
BtgZI GCGATG 1 cut(s) 660
BtrI CACGTC 2 cut(s) 323, 618
BtsCI GGATG 5 cut(s) 59, 403, 428, 451, 628
Cac8I GCNNGC 1 cut(s) 498
CfoI GCGC 1 cut(s) 645
CseI GACGC 1 cut(s) 489
Csp6I GTAC 1 cut(s) 364
CviAII CATG 3 cut(s) 231, 317, 605
CviJI RGCY 5 cut(s) 98, 129, 187, 309, 496
CviKI_1 RGCY 5 cut(s) 98, 129, 187, 309, 496
CviQI GTAC 1 cut(s) 364
DpnI GATC 1 cut(s) 432
DpnII GATC 1 cut(s) 430
EcoRII CCWGG 2 cut(s) 124, 148
Esp3I CGTCTC 2 cut(s) 507, 608
FaeI CATG 3 cut(s) 234, 320, 608
FaiI YATR 8 cut(s) 232, 263, 288, 318, 507, 521, 560, 606
FatI CATG 3 cut(s) 230, 316, 604
Fnu4HI GCNGC 2 cut(s) 85, 111
FokI GGATG 5 cut(s) 66, 410, 435, 458, 635
Fsp4HI GCNGC 2 cut(s) 85, 111
FspBI CTAG 2 cut(s) 182, 450
GlaI GCGC 1 cut(s) 644
GluI GCNGC 2 cut(s) 85, 111
HaeIII GGCC 1 cut(s) 129
HapII CCGG 1 cut(s) 395
HgaI GACGC 1 cut(s) 489
HhaI GCGC 1 cut(s) 645
Hin1II CATG 3 cut(s) 234, 320, 608
Hin6I GCGC 1 cut(s) 643
HinP1I GCGC 1 cut(s) 643
HindIII AAGCTT 1 cut(s) 494
HinfI GANTC 1 cut(s) 41
HpaII CCGG 1 cut(s) 395
HphI GGTGA 1 cut(s) 448
Hpy166II GTNNAC 1 cut(s) 146
Hpy188III TCNNGA 3 cut(s) 303, 395, 542
Hpy8I GTNNAC 1 cut(s) 146
HpyAV CCTTC 1 cut(s) 370
HpyCH4III ACNGT 1 cut(s) 91
HpyCH4IV ACGT 3 cut(s) 322, 410, 617
HpyCH4V TGCA 9 cut(s) 70, 87, 113, 257, 276, 383, 426, 525, 604
HpySE526I ACGT 3 cut(s) 322, 410, 617
Hsp92II CATG 3 cut(s) 234, 320, 608
HspAI GCGC 1 cut(s) 643
Kpn2I TCCGGA 1 cut(s) 394
Kzo9I GATC 1 cut(s) 430
LpnPI CCDG 9 cut(s) 111, 135, 138, 162, 316, 408, 419, 555, 591
Lsp1109I GCAGC 2 cut(s) 71, 97
LweI GCATC 3 cut(s) 413, 436, 637
MaeI CTAG 2 cut(s) 182, 450
MaeII ACGT 3 cut(s) 322, 410, 617
MaeIII GTNAC 3 cut(s) 133, 406, 665
MalI GATC 1 cut(s) 432
MboI GATC 1 cut(s) 430
MboII GAAGA 1 cut(s) 566
MflI RGATCY 1 cut(s) 430
MluCI AATT 9 cut(s) 104, 238, 258, 280, 370, 515, 536, 545, 565
MmeI TCCRAC 2 cut(s) 13, 423
MnlI CCTC 5 cut(s) 205, 299, 319, 604, 664
MroI TCCGGA 1 cut(s) 394
MseI TTAA 2 cut(s) 236, 390
MslI CAYNNNNRTG 2 cut(s) 321, 603
MspI CCGG 1 cut(s) 395
MspR9I CCNGG 2 cut(s) 126, 150
MvaI CCWGG 2 cut(s) 126, 150
MvnI CGCG 2 cut(s) 176, 645
NdeII GATC 1 cut(s) 430
NlaIII CATG 3 cut(s) 234, 320, 608
NmuCI GTSAC 3 cut(s) 133, 406, 665
NspI RCATGY 1 cut(s) 608
PfeI GAWTC 1 cut(s) 41
PkrI GCNGC 2 cut(s) 86, 112
Psp6I CCWGG 2 cut(s) 124, 148
PspGI CCWGG 2 cut(s) 124, 148
PsuI RGATCY 1 cut(s) 430
RsaI GTAC 1 cut(s) 365
RsaNI GTAC 1 cut(s) 364
RseI CAYNNNNRTG 2 cut(s) 321, 603
SaqAI TTAA 2 cut(s) 236, 390
SatI GCNGC 2 cut(s) 85, 111
Sau3AI GATC 1 cut(s) 430
ScaI AGTACT 1 cut(s) 365
ScrFI CCNGG 2 cut(s) 126, 150
SetI ASST 7 cut(s) 183, 189, 216, 325, 413, 498, 620
SfaNI GCATC 3 cut(s) 413, 436, 637
SmiMI CAYNNNNRTG 2 cut(s) 321, 603
Sse9I AATT 9 cut(s) 104, 238, 258, 280, 370, 515, 536, 545, 565
SsiI CCGC 1 cut(s) 420
SspMI CTAG 2 cut(s) 182, 450
StyD4I CCNGG 2 cut(s) 124, 148
TaaI ACNGT 1 cut(s) 91
TaiI ACGT 3 cut(s) 325, 413, 620
TasI AATT 9 cut(s) 104, 238, 258, 280, 370, 515, 536, 545, 565
TatI WGTACW 1 cut(s) 363
TfiI GAWTC 1 cut(s) 41
Tru1I TTAA 2 cut(s) 236, 390
Tru9I TTAA 2 cut(s) 236, 390
TseFI GTSAC 3 cut(s) 133, 406, 665
TseI GCWGC 2 cut(s) 84, 110
Tsp45I GTSAC 3 cut(s) 133, 406, 665
TspDTI ATGAA 6 cut(s) 219, 305, 356, 498, 587, 639
XapI RAATTY 6 cut(s) 104, 238, 280, 515, 536, 545
XceI RCATGY 1 cut(s) 608
XspI CTAG 2 cut(s) 182, 450
ZrmI AGTACT 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.